TCONS_00010112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010112
Unique NameTCONS_00010112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010112 ID=TCONS_00010112|Name=TCONS_00010112|organism=Clytia hemisphaerica|type=transcript|length=1391bp
CgtattttcattcatttctaaacaaGAGAAGACTCCTGTCTAGGCATTca
agctttaaactcaatggtttacACTCTTCTTAAAAGgattaaaaacaaaa
tggctgctaCGAATGATGATACAAGAGAAAATCAAAGACCAGAGATTTAC
AATGAACTTATAACGGATGAAGAAGTCATGAAGTTTCGCCGACAGATTGA
TGACATCGAATTCAAAGGATTATCTTTCGTGCAGCCTTACGGATACATTT
TCAGTGAACGATATATCAAGTATCATAatcaattccaaaattttcaaatg
ttcgAAGATGATGTTTTTATAGCGACTTATCCAAGATGTGGAACCCGTTG
GATGCAAGAGCTTGTATGGCGCGTACGAAATGATCAGGAAGCCCTATCAA
CAGAATATTTGAATGTCAGGGTACCTATGCTAGATTTTTGCATTAACTTT
GAAGAAGATGCACACAATTTTAGTCCGATCAGTAACTGCGACAATTTGCC
ACGACCAAGAGCCTTCAAAACACATCTTGCATACGATCTCTTACCAAAGC
AATTCCACCAACAGAAGAAAGGAAAGGCAATCTTCGTAATACGGAACCCA
CGTGACATATGCCAATCATTACTCAATTATTTccaaaacatagaaaatta
CACAGGAGATATTCAAACAATTGCCAACATTATGACCAAAGATGGAATAG
GACTTTTCTATGGTCCATTCTTCAAAGTTGTATTAAGTTATTGGAATAAA
AGACACGATGATAACATCCTTATCGTATTTTATGAAGAAATGCAAAAAGA
TTTGGGCTCGGTTATCCAAAAAGTGGCAGATTTTTTGAACGTCTCGATTA
CTACAGATCGAGTTGAGCATTTAGTGGACTTCTTATCGTTCAATAGTATG
AAAGACAACAAATCTTCCTTATTTAGCAGTGAATTTATGAGCAAATCAGC
AGCCAGGATGTATCACAAAGGTCGAGTGGGCAGTTGGAAAGATGTCTTCA
CGCCTGAAATGATCCAACAATTTGAAGAATGGGAAAATAAACATCTAAAA
AATACAGACTTGAAATTCATCTATGAATAATATTGATGCTTAGCTATGTA
ATACCATGTTTAATGCGACATCCTGATCCTGACTCTCAAAAAATCATGTT
TGCGGTAGTTGCTTTACATTTTCAAATACTTGATGTTCGTGTTCACTCAA
AACTCTAACTCTAACAAAACTCATTAACTTTACGTGGTGATTATTTTACA
TTTTGTAACAAATAATTTTGCACTACGATGTAATTGTATGAGGTAGCTGC
TTTATTTTCACTGCTAAATTTTAATGTAATGTTTGTGGTAACAATGACTT
TACATTTTTAACTCCAAATTATTGTTTCGCGGTAACTGTTT
Run BLAST on NCBI

protein sequence of TCONS_00010112-protein

>TCONS_00010112-protein ID=TCONS_00010112-protein|Name=TCONS_00010112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MVYTLLKRIKNKMAATNDDTRENQRPEIYNELITDEEVMKFRRQIDDIEF
KGLSFVQPYGYIFSERYIKYHNQFQNFQMFEDDVFIATYPRCGTRWMQEL
VWRVRNDQEALSTEYLNVRVPMLDFCINFEEDAHNFSPISNCDNLPRPRA
FKTHLAYDLLPKQFHQQKKGKAIFVIRNPRDICQSLLNYFQNIENYTGDI
QTIANIMTKDGIGLFYGPFFKVVLSYWNKRHDDNILIVFYEEMQKDLGSV
IQKVADFLNVSITTDRVEHLVDFLSFNSMKDNKSSLFSSEFMSKSAARMY
HKGRVGSWKDVFTPEMIQQFEEWENKHLKNTDLKFIYE
Run BLAST on NCBI

transcript from alignment at sc0000102:299529..303105-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010112 ID=TCONS_00010112|Name=TCONS_00010112|organism=Clytia hemisphaerica|type=transcript|length=3577bp|location=Sequence derived from alignment at sc0000102:299529..303105- (Clytia hemisphaerica)
CGTATTTTCATTCATTTCTAAACAAGAGAAGACTCCTGTCTAGGCATTCA
AGCTTTAAACTCAATGGTTTACACTCTTCTTAAAAGGATTAAAAACAAAA
TGGCTGCTACGAATGATGATACAAGAGAAAATCAAAGACCAGAGATTTAC
AATGAACTTATAACGGATGAAGAAGTCATGAAGTTTCGCCGACAGATTGA
TGACATCGAATTCAAAGGATTATCTTTCGTGCAGCCTTACGGATACATTT
TCAGTGAACGATATATCAAGTATCATAATCAATTCCAAAATTTTCAAATG
TTCGAAGATGATGTTTTTATAGCGACTTATCCAAGATGTGGTAAGTTTCT
CGTTTTGAAGAATCCTGTTAGCACCAGAATTAGCTCCAGAAACACCCATT
TCTCGTGCATAAATCACAGATAGATATCGTGTCACGATTCTGGTAGGACC
CCCGCCTCACCAGAAAATTTTAAACAAAATTTCGTCACTGGTGGGAAAAA
TACTCTAGGATTTCAGCCTAATTGGGAAATTGACTTTGATTTCAGCACCG
TTTTTAGAATTTAATGAAAAAAAATTGCACTCGAAATCCAGCCCCATTGG
ATGAGCCGGGAATAGTTAAACTTTCATCCCCCAAAGGGATTTCCTTCGAA
ATTTGCATCCACCGACTGTGGGAAGAGTTTCACCGGGGCTGTGAAAAAGC
GTGACAAAATAACTAAGCTGAATTAAGCCTCCTTCCAACGAACCAAACAT
GATCTATTTTGCCTTAGCCAAAGCTAAGAAAGTCGGAGCAATACGATTTT
CTTAGACAGTAATGAAGTCGCCCCTACGGAATTTTTTTCCGGACTAAGTT
TTCTGTCTCTTAAATTATTTCTGAATTCGGTCTTGATCTTTTTTAAGGAA
CCCGTTGGATGCAAGAGCTTGTATGGCGCGTACGAAATGATCAGGAAGCC
CTATCAACAGAATATTTGAATGTCAGGGTACCTATGCTAGAGTAAGACCT
TTCAACCTTTAATTAAATCTAAACTATACCCCTGTGTCACAGGCCAACCC
AATGGAGCTTCAATTGAATTTCGACCCCAGTGGGAGCCCTACCGGAAACT
TTGATTTTATCAATATTCGAGATTCAATATAAATAATTGCACTCCAAAAT
CCCGATTCGTGGAATTTCGATAGAAATTTTTATCCACGTTAGGAGAAAGA
ATTCTACCTGGGCTGTGAGACTTAAAATGGTATATCGTAACCGTCATTAT
AACTACAGTCTATAACAAACAAATCTGCGCCAAGAGTTCAACAAGGAAAA
TTTGCTCAAATTTGTATTCTATCAAAAGTCAAAACCTCTTTTGTCGTCTC
TACAGATTATCTTTTAGGATATTTTTTAAGCTATTAATGAAATAATCGTC
AGCCGTGCAAAATTACTCGAATCTGATTGGTTTAGAGGAGTGCAATTAAT
CGTTAATTGCACTATTACCACTTTTTGCACTCTTCGGCGGGGGGACACTT
TTGTCCCCTCATTCTTTTCTCTCCAGAGACTTTTTTTTACTATATAATAA
AAACAAAGACATTTTTTTTCTTCAATATAAAAAAGAACAAAGAAGTTTTA
CGTTACAATAGCTTCTTTTAATTGAAAAGAAAGAAAAATTACACTGCAAT
GTTTTCTTTTTAAACAAAAGAAAAAAAGGAGGTTTTCGAATGTTTACAAA
AAAAATGTTTACTCGTAACAAAGGAGAAAATACCGTAATTTGCACTCGTC
CTTCGGACTCGTGCAAATTACTATTTTCTTCTTTGTTACTCGTGATTAAT
CGTTAATTGCACTCCAAACCATACGATTACTAGTACTAATAGATCTCATC
GACCCTCACAAACAACTTTGCATTTTATTTTCTACACTTTTCAGTTTTTG
CATTAACTTTGAAGAAGATGCACACAATTTTAGTCCGATCAGTAACTGCG
ACAATTTGCCACGACCAAGAGCCTTCAAAACACATCTTGCATACGATCTC
TTACCAAAGCAATTCCACCAACAGAAGAAAGGAAAGGTACACTTTGATCT
ATTTGGCACCTTTCAGATTTCGGCGCTCCTTTCGACATGTCTTTCTATCC
CGCAAAAGAAGCGACAATTCTTTTTAGGACATGCACACAAAATAATAAAT
ATCTACTACTAAAGTCATTACGACATGACAGAGCATGCATGTAACGCTAA
GTTAATTTCCCGGCCATTGACATCTAGAAATACCCAGATACGACCAACAA
AATGATGACTCGTCTTCCTTATTCAAAACGAACGTCATAAAAAATGAAAA
TCGAATCTTCTTTTTATAACTTCAGGCAATCTTCGTAATACGGAACCCAC
GTGACATATGCCAATCATTACTCAATTATTTCCAAAACATAGAAAATTAC
ACAGGAGATATTCAAACAATTGCCAACATTATGACCAAAGATGGAATAGG
ACTTTTCTATGGTCCATTCTTCAAAGTTGTATTAAGTTATTGGAATAAAA
GACACGATGATAACATCCTTATCGTATTTTATGAAGAAATGCAAAAAGAT
TTGGGCTCGGTTATCCAAAAAGTGGCAGATTTTTTGAACGTCTCGATTAC
TACAGATCGAGTTGAGCATTTAGTGGACTTCTTATCGTTCAATAGTATGA
AAGACAACAAATCTTCCTTATTTAGCAGTGAATTTATGGTAAATATTCTT
ATACCTGACATTTATACAGTTGGACTCCAAAACCCTTCATAAATCGAACA
AATTTTCTTAGTTCCCTCATATTTGTTCGAGTTATGGAGACTCAACTTAA
CTCAATTTTGATTTTCTCCCTCTTATTTTGAAAACAAAACAGATGTGAAT
AAACTTTTTAGTTGCCTCAAAATGCCAATCTCTCTTTCAAAACTCCATAA
AAATTTTTAAGGCGCCTAGTAGTAGAGAATTTATTATCTGAACGATTACC
GAATCCCCTTTGCGTTCGAGTAACTAAGATTTAGAAACTTAAACTAAGTA
ATGGTATACCTATTTTTCAGTAGAGCCTATAAACAATAACGAAATAAAAA
AAATACGCACATAAATGTGTCTTAAAGACGCCAGTGGGCTATAAAATTTG
AAATCGTCTTTCCATCATTTTCTAGAGCAAATCAGCAGCCAGGATGTATC
ACAAAGGTCGAGTGGGCAGTTGGAAAGATGTCTTCACGCCTGAAATGATC
CAACAATTTGAAGAATGGGAAAATAAACATCTAAAAAATACAGACTTGAA
ATTCATCTATGAATAATATTGATGCTTAGCTATGTAATACCATGTTTAAT
GCGACATCCTGATCCTGACTCTCAAAAAATCATGTTTGCGGTAGTTGCTT
TACATTTTCAAATACTTGATGTTCGTGTTCACTCAAAACTCTAACTCTAA
CAAAACTCATTAACTTTACGTGGTGATTATTTTACATTTTGTAACAAATA
ATTTTGCACTACGATGTAATTGTATGAGGTAGCTGCTTTATTTTCACTGC
TAAATTTTAATGTAATGTTTGTGGTAACAATGACTTTACATTTTTAACTC
CAAATTATTGTTTCGCGGTAACTGTTT

Coding sequence (CDS) from alignment at sc0000102:299529..303105-

>TCONS_00010112 ID=TCONS_00010112|Name=TCONS_00010112|organism=Clytia hemisphaerica|type=CDS|length=5085bp|location=Sequence derived from alignment at sc0000102:299529..303105- (Clytia hemisphaerica)
AGCAAATCAGCAGCCAGGATGTATCACAAAGGTCGAGTGGGCAGTTGGAA
AGATGTCTTCACGCCTGAAATGATCCAACAATTTGAAGAATGGGAAAATA
AACATCTAAAAAATACAGACTTGAAATTCATCTATGAATAAGCAATCTTC
GTAATACGGAACCCACGTGACATATGCCAATCATTACTCAATTATTTCCA
AAACATAGAAAATTACACAGGAGATATTCAAACAATTGCCAACATTATGA
CCAAAGATGGAATAGGACTTTTCTATGGTCCATTCTTCAAAGTTGTATTA
AGTTATTGGAATAAAAGACACGATGATAACATCCTTATCGTATTTTATGA
AGAAATGCAAAAAGATTTGGGCTCGGTTATCCAAAAAGTGGCAGATTTTT
TGAACGTCTCGATTACTACAGATCGAGTTGAGCATTTAGTGGACTTCTTA
TCGTTCAATAGTATGAAAGACAACAAATCTTCCTTATTTAGCAGTGAATT
TATGTTTTTGCATTAACTTTGAAGAAGATGCACACAATTTTAGTCCGATC
AGTAACTGCGACAATTTGCCACGACCAAGAGCCTTCAAAACACATCTTGC
ATACGATCTCTTACCAAAGCAATTCCACCAACAGAAGAAAGGAAAGGAAC
CCGTTGGATGCAAGAGCTTGTATGGCGCGTACGAAATGATCAGGAAGCCC
TATCAACAGAATATTTGAATGTCAGGGTACCTATGCTAGAATGGTTTACA
CTCTTCTTAAAAGGATTAAAAACAAAATGGCTGCTACGAATGATGATACA
AGAGAAAATCAAAGACCAGAGATTTACAATGAACTTATAACGGATGAAGA
AGTCATGAAGTTTCGCCGACAGATTGATGACATCGAATTCAAAGGATTAT
CTTTCGTGCAGCCTTACGGATACATTTTCAGTGAACGATATATCAAGTAT
CATAATCAATTCCAAAATTTTCAAATGTTCGAAGATGATGTTTTTATAGC
GACTTATCCAAGATGTGAGCAAATCAGCAGCCAGGATGTATCACAAAGGT
CGAGTGGGCAGTTGGAAAGATGTCTTCACGCCTGAAATGATCCAACAATT
TGAAGAATGGGAAAATAAACATCTAAAAAATACAGACTTGAAATTCATCT
ATGAATAAGCAATCTTCGTAATACGGAACCCACGTGACATATGCCAATCA
TTACTCAATTATTTCCAAAACATAGAAAATTACACAGGAGATATTCAAAC
AATTGCCAACATTATGACCAAAGATGGAATAGGACTTTTCTATGGTCCAT
TCTTCAAAGTTGTATTAAGTTATTGGAATAAAAGACACGATGATAACATC
CTTATCGTATTTTATGAAGAAATGCAAAAAGATTTGGGCTCGGTTATCCA
AAAAGTGGCAGATTTTTTGAACGTCTCGATTACTACAGATCGAGTTGAGC
ATTTAGTGGACTTCTTATCGTTCAATAGTATGAAAGACAACAAATCTTCC
TTATTTAGCAGTGAATTTATGTTTTTGCATTAACTTTGAAGAAGATGCAC
ACAATTTTAGTCCGATCAGTAACTGCGACAATTTGCCACGACCAAGAGCC
TTCAAAACACATCTTGCATACGATCTCTTACCAAAGCAATTCCACCAACA
GAAGAAAGGAAAGGAACCCGTTGGATGCAAGAGCTTGTATGGCGCGTACG
AAATGATCAGGAAGCCCTATCAACAGAATATTTGAATGTCAGGGTACCTA
TGCTAGAATGGTTTACACTCTTCTTAAAAGGATTAAAAACAAAATGGCTG
CTACGAATGATGATACAAGAGAAAATCAAAGACCAGAGATTTACAATGAA
CTTATAACGGATGAAGAAGTCATGAAGTTTCGCCGACAGATTGATGACAT
CGAATTCAAAGGATTATCTTTCGTGCAGCCTTACGGATACATTTTCAGTG
AACGATATATCAAGTATCATAATCAATTCCAAAATTTTCAAATGTTCGAA
GATGATGTTTTTATAGCGACTTATCCAAGATGTGAGCAAATCAGCAGCCA
GGATGTATCACAAAGGTCGAGTGGGCAGTTGGAAAGATGTCTTCACGCCT
GAAATGATCCAACAATTTGAAGAATGGGAAAATAAACATCTAAAAAATAC
AGACTTGAAATTCATCTATGAATAAGCAATCTTCGTAATACGGAACCCAC
GTGACATATGCCAATCATTACTCAATTATTTCCAAAACATAGAAAATTAC
ACAGGAGATATTCAAACAATTGCCAACATTATGACCAAAGATGGAATAGG
ACTTTTCTATGGTCCATTCTTCAAAGTTGTATTAAGTTATTGGAATAAAA
GACACGATGATAACATCCTTATCGTATTTTATGAAGAAATGCAAAAAGAT
TTGGGCTCGGTTATCCAAAAAGTGGCAGATTTTTTGAACGTCTCGATTAC
TACAGATCGAGTTGAGCATTTAGTGGACTTCTTATCGTTCAATAGTATGA
AAGACAACAAATCTTCCTTATTTAGCAGTGAATTTATGTTTTTGCATTAA
CTTTGAAGAAGATGCACACAATTTTAGTCCGATCAGTAACTGCGACAATT
TGCCACGACCAAGAGCCTTCAAAACACATCTTGCATACGATCTCTTACCA
AAGCAATTCCACCAACAGAAGAAAGGAAAGGAACCCGTTGGATGCAAGAG
CTTGTATGGCGCGTACGAAATGATCAGGAAGCCCTATCAACAGAATATTT
GAATGTCAGGGTACCTATGCTAGAATGGTTTACACTCTTCTTAAAAGGAT
TAAAAACAAAATGGCTGCTACGAATGATGATACAAGAGAAAATCAAAGAC
CAGAGATTTACAATGAACTTATAACGGATGAAGAAGTCATGAAGTTTCGC
CGACAGATTGATGACATCGAATTCAAAGGATTATCTTTCGTGCAGCCTTA
CGGATACATTTTCAGTGAACGATATATCAAGTATCATAATCAATTCCAAA
ATTTTCAAATGTTCGAAGATGATGTTTTTATAGCGACTTATCCAAGATGT
GAGCAAATCAGCAGCCAGGATGTATCACAAAGGTCGAGTGGGCAGTTGGA
AAGATGTCTTCACGCCTGAAATGATCCAACAATTTGAAGAATGGGAAAAT
AAACATCTAAAAAATACAGACTTGAAATTCATCTATGAATAAGCAATCTT
CGTAATACGGAACCCACGTGACATATGCCAATCATTACTCAATTATTTCC
AAAACATAGAAAATTACACAGGAGATATTCAAACAATTGCCAACATTATG
ACCAAAGATGGAATAGGACTTTTCTATGGTCCATTCTTCAAAGTTGTATT
AAGTTATTGGAATAAAAGACACGATGATAACATCCTTATCGTATTTTATG
AAGAAATGCAAAAAGATTTGGGCTCGGTTATCCAAAAAGTGGCAGATTTT
TTGAACGTCTCGATTACTACAGATCGAGTTGAGCATTTAGTGGACTTCTT
ATCGTTCAATAGTATGAAAGACAACAAATCTTCCTTATTTAGCAGTGAAT
TTATGTTTTTGCATTAACTTTGAAGAAGATGCACACAATTTTAGTCCGAT
CAGTAACTGCGACAATTTGCCACGACCAAGAGCCTTCAAAACACATCTTG
CATACGATCTCTTACCAAAGCAATTCCACCAACAGAAGAAAGGAAAGGAA
CCCGTTGGATGCAAGAGCTTGTATGGCGCGTACGAAATGATCAGGAAGCC
CTATCAACAGAATATTTGAATGTCAGGGTACCTATGCTAGAATGGTTTAC
ACTCTTCTTAAAAGGATTAAAAACAAAATGGCTGCTACGAATGATGATAC
AAGAGAAAATCAAAGACCAGAGATTTACAATGAACTTATAACGGATGAAG
AAGTCATGAAGTTTCGCCGACAGATTGATGACATCGAATTCAAAGGATTA
TCTTTCGTGCAGCCTTACGGATACATTTTCAGTGAACGATATATCAAGTA
TCATAATCAATTCCAAAATTTTCAAATGTTCGAAGATGATGTTTTTATAG
CGACTTATCCAAGATGTGAGCAAATCAGCAGCCAGGATGTATCACAAAGG
TCGAGTGGGCAGTTGGAAAGATGTCTTCACGCCTGAAATGATCCAACAAT
TTGAAGAATGGGAAAATAAACATCTAAAAAATACAGACTTGAAATTCATC
TATGAATAAGCAATCTTCGTAATACGGAACCCACGTGACATATGCCAATC
ATTACTCAATTATTTCCAAAACATAGAAAATTACACAGGAGATATTCAAA
CAATTGCCAACATTATGACCAAAGATGGAATAGGACTTTTCTATGGTCCA
TTCTTCAAAGTTGTATTAAGTTATTGGAATAAAAGACACGATGATAACAT
CCTTATCGTATTTTATGAAGAAATGCAAAAAGATTTGGGCTCGGTTATCC
AAAAAGTGGCAGATTTTTTGAACGTCTCGATTACTACAGATCGAGTTGAG
CATTTAGTGGACTTCTTATCGTTCAATAGTATGAAAGACAACAAATCTTC
CTTATTTAGCAGTGAATTTATGTTTTTGCATTAACTTTGAAGAAGATGCA
CACAATTTTAGTCCGATCAGTAACTGCGACAATTTGCCACGACCAAGAGC
CTTCAAAACACATCTTGCATACGATCTCTTACCAAAGCAATTCCACCAAC
AGAAGAAAGGAAAGGAACCCGTTGGATGCAAGAGCTTGTATGGCGCGTAC
GAAATGATCAGGAAGCCCTATCAACAGAATATTTGAATGTCAGGGTACCT
ATGCTAGAATGGTTTACACTCTTCTTAAAAGGATTAAAAACAAAATGGCT
GCTACGAATGATGATACAAGAGAAAATCAAAGACCAGAGATTTACAATGA
ACTTATAACGGATGAAGAAGTCATGAAGTTTCGCCGACAGATTGATGACA
TCGAATTCAAAGGATTATCTTTCGTGCAGCCTTACGGATACATTTTCAGT
GAACGATATATCAAGTATCATAATCAATTCCAAAATTTTCAAATGTTCGA
AGATGATGTTTTTATAGCGACTTATCCAAGATGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005667XLOC_005667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010112-exon-sc0000102-1575043694:302766..303105TCONS_00010112-exon-sc0000102-1575043694:302766..303105Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1575043694:302115..302208TCONS_00010112-exon-sc0000102-1575043694:302115..302208Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1575043694:301070..301211TCONS_00010112-exon-sc0000102-1575043694:301070..301211Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1575043694:300418..300780TCONS_00010112-exon-sc0000102-1575043694:300418..300780Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1575043694:299529..299980TCONS_00010112-exon-sc0000102-1575043694:299529..299980Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1510915933:302766..303105TCONS_00010112-exon-sc0000102-1510915933:302766..303105Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1510915933:302115..302208TCONS_00010112-exon-sc0000102-1510915933:302115..302208Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1510915933:301070..301211TCONS_00010112-exon-sc0000102-1510915933:301070..301211Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1510915933:300418..300780TCONS_00010112-exon-sc0000102-1510915933:300418..300780Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1510915933:299529..299980TCONS_00010112-exon-sc0000102-1510915933:299529..299980Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1491911889:302766..303105TCONS_00010112-exon-sc0000102-1491911889:302766..303105Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1491911889:302115..302208TCONS_00010112-exon-sc0000102-1491911889:302115..302208Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1491911889:301070..301211TCONS_00010112-exon-sc0000102-1491911889:301070..301211Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1491911889:300418..300780TCONS_00010112-exon-sc0000102-1491911889:300418..300780Clytia hemisphaericaexon
TCONS_00010112-exon-sc0000102-1491911889:299529..299980TCONS_00010112-exon-sc0000102-1491911889:299529..299980Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010112-proteinTCONS_00010112-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:299529..303105 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.8985	15.425	19.881	18.5194	3.80483	2.39891	4.47633	3.79329	5.51389	6.0466	1.24678	5.63713	18.7843	23.716	13.1065	11.5778	2.74892	4.75751	1.88249	0.767924	2.81496	1.9534	24.7097	26.9076	8.92654	8.48442	298.303	415.823	22.9203	16.971
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000863Sulfotransferase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008146sulfotransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008146 sulfotransferase activity
Blast
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BLAST of TCONS_00010112 vs. Swiss-Prot (Human)
Match: ST1B1 (Sulfotransferase family cytosolic 1B member 1 OS=Homo sapiens GN=SULT1B1 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.507e-29
Identity = 83/296 (28.04%), Postives = 141/296 (47.64%), Query Frame = 1 
Query:  202 DIEFKGLSFVQPYGYIFSERYIKYHNQFQNFQMFEDDVFIATYPRCGTRWMQELVWRVRNDQ--EALSTEYLNVRVPMLDFCINFEEDAHNFSPISNCDNLPRPRAFKTHLAYDLLPKQFHQQKKGKAIFVIRNPRDICQSLLNY--FQNIENYTGDIQTIANIMTKDGIGLFYGPFFKVVLSYWNKRHDDNILIVFYEEMQKDLGSVIQKVADFLNVSITTDRVEHLVDFLSFNSMKDNXX---XXXXXXXXXXXAARMYHKGRVGSWKDVFTPEMIQQFEEWENKHLKNTDLKF 1068
            DI  K L  V  +GY  +  +     + + F    DD+ IATYP+ GT W+ E++  + ND   E     ++  +VPML+  +         S I   +  P PR  KTHL  DLLPK F  +   K I++ RN +D+  S  ++    N++ + G  +          +   YG +F  V ++W K+ +  IL ++YE+M+++    I+K+  FL  ++  + ++ ++   SF  MKDN     +   +  M  S +    KG  G WK+ FT    ++F+      +  T L+F
Sbjct:    6 DILRKDLKLV--HGYPMTCAFASNWEKIEQFHSRPDDIVIATYPKSGTTWVSEIIDMILNDGDIEKCKRGFITEKVPMLEMTL----PGLRTSGIEQLEKNPSPRIVKTHLPTDLLPKSF-WENNCKMIYLARNAKDVSVSYYHFDLMNNLQPFPGTWEEYLEKFLTGKVA--YGSWFTHVKNWWKKKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNPLVNYTHLPTTVMDHSKSPFMRKGTAGDWKNYFTVAQNEKFDAIYETEMSKTALQF 292
The following BLAST results are available for this feature:
BLAST of TCONS_00010112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST1B11.507e-2928.04Sulfotransferase family cytosolic 1B member 1 OS=H... [more]
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