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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010109 ID=TCONS_00010109|Name=TCONS_00010109|organism=Clytia hemisphaerica|type=transcript|length=7904bpRun BLAST on NCBI protein sequence of TCONS_00010109-protein >TCONS_00010109-protein ID=TCONS_00010109-protein|Name=TCONS_00010109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=904bp MKAFLLVVTFAVFLAHAQADDDPCQNNWGAWSTCSGCDKYRKRKCLLDETRun BLAST on NCBI transcript from alignment at sc0000102:253248..279437- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010109 ID=TCONS_00010109|Name=TCONS_00010109|organism=Clytia hemisphaerica|type=transcript|length=26190bp|location=Sequence derived from alignment at sc0000102:253248..279437- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000102:253248..279437- >TCONS_00010109 ID=TCONS_00010109|Name=TCONS_00010109|organism=Clytia hemisphaerica|type=CDS|length=43440bp|location=Sequence derived from alignment at sc0000102:253248..279437- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010109 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 166.007 bits (419), Expect = 1.326e-40 Identity = 143/511 (27.98%), Postives = 225/511 (44.03%), Query Frame = 2
Query: 2171 NNQKRKRRSN----PNILIVPS---DDEEPYTYKPPQ-----VNITSDPKFPTKSGTTEQVAYNECNIAITQSTFGKACLRMYPDMDFTTLVDECVLDIKITDDI---KASTSSAQNSFTALCKFVVIEEFTKNSTSTPQNNNGTKANSTTDKDETGPPVFIPPPILVENLCPNDCSGQGACVNSTCICNANFTSTDCSMEKGLPPTVRGISNGGLCDIRKRDCLRARII*FNFLDTDNLKSRSTKIDLTDTGYIKTNDIDYHDAYLLSISELVVEIPENDLKISGDIDGSPGKPMGGFSIAMSNDGVKYSTNESIFIVYDSKCLQCNANNIPICVRKNDSCNINGYCFNAGQDYPNNWCKMCDPSTNSFVNKTLKENSPPTFKNKTNHIAITNQVN-HYVILAEDPERKNQITYSTVGESNGFAISSTSGLLSYKPTKIGETRVTIRATDICGAFTDKEFTFEALKCPCEGLNGGSC----RFNETDRMQLECVCPQGCTGEKCDQPLPG 3643
N Q R +R N P + PS D E TY P+ V P +PT SG TE C + S+ G+ CL + ++++ CV D+ + DD+ +A + +N C+ ++EE N T+ T+ +D IL CPN CSG G C+ C C+ +F+S DCS P + + N G CD++K +C+ R+ F + ++K TK+ + ++ I Y + + ++P D++ +D GKP G + + +SNDG K+S N I ++YD C C C K + C I+G C+ G P + C +C P + F L+ N PP + + + N Y +A DPE + I ++ G ++SS +GL +K + ++T+R D C A T T E C+ LNGGSC F+ + L CVC G G C+ + G
Sbjct: 745 NRQNRWKRQNFHEFPPLFAFPSLSQTDLEELTYFFPEDHAEDVQQEFFPSWPTPSGLTEYSTLTLCQETLANSSIGRLCL-AFLGKRLDSVIEMCVKDVLLKDDLSWAEAGVALLENE----CEKRIVEEGKYN----------TEEYGTSIED-----------ILSVLKCPNLCSGNGQCMEWGCACSPSFSSYDCSDSYDKAPEITELGNAGFCDVQKYNCMMVRVFGKGFKELPSIKCEVTKLQYNSSEWMPGEPI-YTQTVFHNSRAVDCQLP-TDVQQFDTMDLVGGKPTGKWQLKVSNDGYKFS-NPKITVIYDGACQVCGLYKNDSCTIKENVCIIDGLCYVEGDKNPTSPCLICRPKISRFTWSFLENNQPPVIQALQDKLQTFYGENFEYQFVAFDPEGSD-IHFTLDSGPEGASVSS-AGLFMWKTDLLTTQQITVRLNDDCDAET--RVTIEVTVKSCDCLNGGSCVSDRNFSPGSGVYL-CVCLPGFHGSLCEVDISG 1221 HSP 2 Score: 90.1225 bits (222), Expect = 1.618e-17 Identity = 99/417 (23.74%), Postives = 171/417 (41.01%), Query Frame = 2
Query: 797 CKVDSTDTSASVRHQVEFYQGNELVEGLYGKLVATKILAGTENEAFAENSQTNPLFSLSNEFYCQVSSYYDNLLNITGKSNPQRTAFKFAGIKVEPASLTFKKMDEVHSIRIYSTIDI--GYIEDWPQGCPITVLF--------YESNDVAIPTDCQKCFNRTGEYVGK--ENAWELKVRRTDF--NNGKKETMFIRIDVSPDLMDWERSQHEVAIHIEKAPAKKCSATGDPHITTFDGLYYHVYHAGDYAMMGTEYGRVEVHMRTFQCGT---SVTCICGIAIRYGDDVIILDTCRGGLTPKFPSK--KKLNPAMKIIQLKGYNGLYYDIVTPDGVTIEFRGHLSGGWNPSYCNVYIKTPS-DYQNRTFGLCGNTNGKKDDELMSKDEETVFKSYENVIASLEYTNEWKLGPGDSL 1987
C D T SV + + + L + V ++ T +AF+ L + +C S ++ L N +S + FAG K++P T + + + +RI ST+ I + Q C I++ + ++A+ + C +T + + TDF + + + ++ V+ D + + I ++ P C DPHI TFDG Y + G + + + EVH+R + C + V+C CG + G D++ D C G L P K + I + Y G I G I R L G W S + I+ PS DY+N T GLCG + +++ K+ + +++ N +A + NEW++ PG S+
Sbjct: 210 CSFDVPATKNSVGFHIAWSR-------LSSQEVKEELTQETTVQAFSLLELDGINLRLGDRIFCSASVFF--LENPHVQSVAIESQEFFAGFKLQPELSTISEDGKEYYLRIESTVPIICSEFSELDQECKISLKLKTIGQGREHLGLNLAL-SSCHVDLLQTSSCANGTCSHTFVYYTAVTDFSRDGDRVSNIVVQPIVNEDFLWNNYIPDSIQIKVKDVPTAYCYTFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYLGRKVTIWFSSGAFI--RADL-GEWGMS---LTIRAPSVDYRN-TLGLCGTFDENPENDFHDKNGMQIDQNFNNYVA---FINEWRILPGKSM 606 The following BLAST results are available for this feature:
BLAST of TCONS_00010109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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