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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010104 ID=TCONS_00010104|Name=TCONS_00010104|organism=Clytia hemisphaerica|type=transcript|length=1922bp tTNATTCCCTCACCACCCTGATCAAGAGGAACGAGAGGAGATGATTAAGG CCTTACCGAAACATTTGAGAGACATTATGCAATCTtttgaagagaaaaag aaacaacaaaatcatgaaaacaaagaagacCGTCAgaatgaaaatcatga aaaactgaaaaataagagAGCTAAAAAGTCCATTTCTATGGAAGATATAC TTTCTGGAAATGAAGAAGAGGAAAAGGAGGAAGGAGTTGAAGCaatgaag aaactaaaaaacGTTGCTGAAGACTTGGATGAAGAGAAtagtgattttac cgatttttATGAAAGGATCACACATAAAGAAGATGTTTTTAATAGGAATA AAAGGGAATCAAGTGAACAAGACATCGAAAAAGAAATAGCAGAACAAAGG AAGAAAGATTTAAAGGTTCGTGTTCGAACGATCAACAAACAAGAAGCTGA CAAATTAGAAACCAATCATGATATGGATGAAAAAACAGAAATGAGAGCAC GAGAGTtggaagaaaaagtcaaaaagcaaTTGGAATCACTCGGTTTAGAC GTCAAGAATAAGATCAAAATCAAAGTGATCACGTCAAAGGATGAATACAA TAAGATGTCCAAAGGTGAAGAATTGATGAGCACCGATCAATTAAATGATG TGAAAGACATGTTCTATGATATTTTGGGTGGAAGTcaggaaaagaagaag gaagAACAGCGTCAACAATCACTAGAAGAAAGTTACATGAAGAAAtggaa tgaaaatgaaaatgacgaCGAATGAATTGTTTTCTCTAAAAACCCAATTA CACACAAAAATGAAAGCTCGTGTCGCTAATTTGTGTCTTTATAGTATGAT ATGTCTTTATAACATCGTTGCTATAGTTTTTTATCTTTCACTTTCACACC CTAGGCTAAAGTTTCAGACTGAAATTTTCGAAATCAGACTAGCCAATTTA TTCGAATATGTTAAGACTAAACACGtgtatataaaaatatattttacgaA AATAATATTGTCTTTTACCAGgattttttgtagatttttactTGGCTTTA TAAGCTATTCAAAATGATCATGAACTATTATGTTAGTTGGTATGTGAACC CTAACTATTTTACCTAGAAAGCTTGAAAACTTTTAGTTTATTTATTAACC TAAATTGGGTACCAAATCCATTCGCTTTAAAGGAACATTAAAGTACtaac gaaatttgtaaacaaaccttatgcagcgggatacaaaatcaaaacaaatg tcacatgtcaaaataaaaaataaaaacaaacatggctgattttgattgtt tcaattgttttgcaattttaattattttctttaatgacacgtgattcacg caatgtttatattttttactacttttatgtcccttttaAGTGTGCACTAT TTCTTTACCATATCAGTGTAATTAGACTGATAACCTTGAGAGTGGTCACA AAAAATAATGCGCACTTGAAGTGAATTGACTTTTGAAAAGTACTTTTTAC ACCTCAAAATTCAGCACTTTTCTCCATCACATTGGTGGCTAACGCCAATG TATTCAAACATTCTGGGAAAACTGGCCGATGATTTTTGCAAGGGAATTCA TTTTCATCAAGACTTTTTATTATATTACAGATACACCTCgagatttcttt ttaatttggaaaattttgatgctttttaGTTATTTATTATTAAcgtttta ttataattttttacaTCTTTTCAATCATAGTTGAAATCGTGGAAGAAAAT TTATTGTTAACATAAGTGTTAAATTATGGGTTAATGTTTTTACCCAAAAT GCTTCTAACTTCctctacactcttttttataaggaccagtaaatttttgt taatGCTTGACTGCTCttattttttggcctatttagGCTCAAATTATTCT tctgttttcatttttaatcgGA Run BLAST on NCBI protein sequence of TCONS_00010104-protein >TCONS_00010104-protein ID=TCONS_00010104-protein|Name=TCONS_00010104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
XFPHHPDQEEREEMIKALPKHLRDIMQSFEEKKKQQNHENKEDRQNENHE KLKNKRAKKSISMEDILSGNEEEEKEEGVEAMKKLKNVAEDLDEENSDFT DFYERITHKEDVFNRNKRESSEQDIEKEIAEQRKKDLKVRVRTINKQEAD KLETNHDMDEKTEMRARELEEKVKKQLESLGLDVKNKIKIKVITSKDEYN KMSKGEELMSTDQLNDVKDMFYDILGGSQEKKKEEQRQQSLEESYMKKWN ENENDDE Run BLAST on NCBI transcript from alignment at sc0000102:225160..229390- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010104 ID=TCONS_00010104|Name=TCONS_00010104|organism=Clytia hemisphaerica|type=transcript|length=4231bp|location=Sequence derived from alignment at sc0000102:225160..229390- (Clytia hemisphaerica) TTNATTCCCTCACCACCCTGATCAAGAGGAACGAGAGGAGATGATTAAGG
CCTTACCGAAACATTTGAGAGACATTATGCAATCTTTTGAAGAGAAAAAG
AAACAACAAAATCATGAAAACAAAGAAGACCGTCAGAATGAAAATCATGA
AAAACTGAAAAATAAGAGAGCTAAAAAGTCCATTTCTATGGAAGATATAC
TTTCTGGAAATGAAGAAGAGGAAAAGGAGGAAGGAGTTGAAGCAATGAAG
AAACTAAAAAACGTTGCTGAAGACTTGGATGAAGAGAATAGTGATTTTAC
CGATTTTTATGAAAGGATCACACATAAAGAAGATGTTTTTAATAGGAATA
AAAGGGAATCAAGTGAACAAGACATCGAAAAAGAAATAGCAGAACAAAGG
AAGAAAGATTTAAAGGTAATTGATGTGAAAAATGGATTTTTTAGGTTCTT
TAAAGCATCACATGCATTTCTAATTCGTTTTGAATTGTCAACCTGTCTAA
CGTTCACTATTAAAATCTGTCTATTATTCCTCTCAGACTCGAGATGATGA
ATTCTTCAGCCAAAGCAAAATAGCTCAAACTGAATGACTTTTTGGGTGTC
CTTTCTAAAATTTAAACTATATTTTTATTTGGATTTATCTACCTTTTATA
AGGGGATTAATTTTCGCGGTAACTTATTTTCGCGAAATAATTTAATTTTT
GCGGGACTTATTTTCGCGAAGACGGGAATTCTAAATTTTCGCGAGGATGA
AATTTCGCGAGTTTCGCGAGAAGTGGGCTTTTTCGAAAATTCAAAACTAA
AAAATCGAACAGTAGACCAATAAAAAACTTGCTTTTGTCTAAAGATATAA
CAAGCATTGTTGATGAAAACTCTGTCGTACCGATTGATATGTCTTTAATA
GGTATAATTTTTCTGAAAACAAAGGAAATTATGTCTAAAAAAATTAATTT
TCGCGAGGATTATATTTTGCGAATTTCGCGAATCCAAAGGTTTTTAAAAT
TTTCGTGGGGATTATATTTCGCGAATTTCGGAAAAACTCGTGAAATTTGC
GAAATATAATTCCCGCGAAAATTAATCCCCTTAAGGTACACAAAATTTAG
TTTAAAATCTATCTTGAAAGTATGTGGACACCTTTTTAACAATCTCTGAG
CATGTATTGAATGCTATATTAAAAGGCTATACACCATTGGAAAGACATTC
ATGACAAATAATAAAAAAGGTGTCCACATATTTTTGAGACAGACATTAAC
TTTATCTGATGGTAAAGGATTGTATTTGACAGGTTCGTGTTCGAACGATC
AACAAACAAGAAGCTGACAAATTAGAAACCAATCATGATATGGATGAAAA
AACAGAAATGAGAGCACGAGAGTTGGAAGAAAAAGTCAAAAAGCAATTGG
AATCACTCGGTTTAGACGTCAAGAGTTAGTTTTCTTTTGTTGATTTGTTT
TACAATTTTTCTCTCATTCTCTAATTATGCACGTTTTTTATAAGAAGAAT
ACACTTTTTTGATTTTTTACACTAAAAATGTTCTTACAGTGTTCTCGTTT
GAATCAACAATTCTTTTCAAAATGGTCGTAAATATTGTTCTTATAAAGAT
GTGTAGTTTGAAATTTAAAAAGAAGTCTGGGCATTTCTACGATTAGAATT
TATACAAGATGCGTCTAGAAAATCTTTAAGATACAAGCACTTTATGTTTC
AAAAGTCTTCAAAGTTGTGTGGTATCATGTCTAGGAAATCCCAAATGCAA
TTACGATACAACAGTCCCCCAATTTACATCCGAGACACTTCACATGGCCC
CCCTTTCCCCCACTGTCAGCATTGAGCTCTTGGCTATTTCCCCGGACCCC
ACTGATAGTGGGGTCGGGGGGACGGATTTTGATCTCGCAAAAATGTTTTG
AATTCTTCTGTCTCAAGATATTTGTTGGGGGATCGTCGGTGCCGTGGTCA
TCTTGCAAGATGTCCACTTTAAAATACATTCATTTTACTCTTCTTTATTC
TCAAATACAGATAAGATCAAAATCAAAGTGATCACGTCAAAGGATGAATA
CAATAAGATGTCCAAAGGTGAAGAATTGATGAGCACCGATCAATTAAATG
ATGTGAAAGACATGTTCTATGATATTTTGGTAAGTCTCAGGACAAAATGA
TGATCCTTTTTTTCAGTTTAACTGAAGTCTGTATTGAATCATTACAAAGT
AGACAGAAGTAGAAATATAATTGATGGGCTCGATTTATTTAATCTTGATT
AAAATTTCACTTTACTGTAAGCACTTTTAATAAATATTCCATCAAGTAAT
TTTATTTTAAAATCACCAAACAGGACGGTTTAAACAACCTACGGTAACAA
TCGTTAATGTATAAGGCTACTAATATTAGAAGTGCTATAAAAACTTGGTC
TTTTCTCCGATGCGGTGGTAAAAGTTCCCTCTCAGACAGCCGTCTCTAGA
GGATTTTCCGTCTCCATATTCTGTATAAGACATCCAAATTTCGATAATAG
ACCTTATCGGGGTTTTTTATTTTTCTAAAACAGTGATGCATTGTGGGATT
GTTTCGGGGGTATTACCATTGAGTTTCAAGCCCGAAGGGCTAGAGGTCAA
TCTCTAACCTTTCTCAGGCAAGAAAAATTGAAGCCTTAAAATATGGGCCG
TATTTTTGATGACGGATTGAATCTAGCAATTCCTTTGTTTTCGAGTGATA
TATTTTTCGAAATTAAGCGGTAAATTTTAGTTTCAATCTGTCATTTGTGT
AAAAACCAGGCGGGTCGCTCAAGGCCGCGCAACTAAGGAATTCCTAAGAG
ATTTCTATTGTTATACCCCCGAAATAATCCCACAATGCATCGCTATTATG
GAAAAATCAAAAACCCCGATAAGATCTTTTATGTGCTAATTTGTTGAGTA
ATCTCCATTTTCCGTCTCAAGTGTAAAACCTTGCTTTGACTACTACCAAT
AATTTTGTTTTCATCATTACTTTATATCACTTCAGGGTGGAAGTCAGGAA
AAGAAGAAGGAAGAACAGCGTCAACAATCACTAGAAGAAAGTTACATGAA
GAAATGGAATGAAAATGAAAATGACGACGAATGAATTGTTTTCTCTAAAA
ACCCAATTACACACAAAAATGAAAGCTCGTGTCGCTAATTTGTGTCTTTA
TAGTATGATATGTCTTTATAACATCGTTGCTATAGTTTTTTATCTTTCAC
TTTCACACCCTAGGCTAAAGTTTCAGACTGAAATTTTCGAAATCAGACTA
GCCAATTTATTCGAATATGTTAAGACTAAACACGTGTATATAAAAATATA
TTTTACGAAAATAATATTGTCTTTTACCAGGATTTTTTGTAGATTTTTAC
TTGGCTTTATAAGCTATTCAAAATGATCATGAACTATTATGTTAGTTGGT
ATGTGAACCCTAACTATTTTACCTAGAAAGCTTGAAAACTTTTAGTTTAT
TTATTAACCTAAATTGGGTACCAAATCCATTCGCTTTAAAGGAACATTAA
AGTACTAACGAAATTTGTAAACAAACCTTATGCAGCGGGATACAAAATCA
AAACAAATGTCACATGTCAAAATAAAAAATAAAAACAAACATGGCTGATT
TTGATTGTTTCAATTGTTTTGCAATTTTAATTATTTTCTTTAATGACACG
TGATTCACGCAATGTTTATATTTTTTACTACTTTTATGTCCCTTTTAAGT
GTGCACTATTTCTTTACCATATCAGTGTAATTAGACTGATAACCTTGAGA
GTGGTCACAAAAAATAATGCGCACTTGAAGTGAATTGACTTTTGAAAAGT
ACTTTTTACACCTCAAAATTCAGCACTTTTCTCCATCACATTGGTGGCTA
ACGCCAATGTATTCAAACATTCTGGGAAAACTGGCCGATGATTTTTGCAA
GGGAATTCATTTTCATCAAGACTTTTTATTATATTACAGATACACCTCGA
GATTTCTTTTTAATTTGGAAAATTTTGATGCTTTTTAGTTATTTATTATT
AACGTTTTATTATAATTTTTTACATCTTTTCAATCATAGTTGAAATCGTG
GAAGAAAATTTATTGTTAACATAAGTGTTAAATTATGGGTTAATGTTTTT
ACCCAAAATGCTTCTAACTTCCTCTACACTCTTTTTTATAAGGACCAGTA
AATTTTTGTTAATGCTTGACTGCTCTTATTTTTTGGCCTATTTAGGCTCA
AATTATTCTTCTGTTTTCATTTTTAATCGGA Coding sequence (CDS) from alignment at sc0000102:225160..229390- >TCONS_00010104 ID=TCONS_00010104|Name=TCONS_00010104|organism=Clytia hemisphaerica|type=CDS|length=3096bp|location=Sequence derived from alignment at sc0000102:225160..229390- (Clytia hemisphaerica) GGTGGAAGTCAGGAAAAGAAGAAGGAAGAACAGCGTCAACAATCACTAGA AGAAAGTTACATGAAGAAATGGAATGAAAATGAAAATGACGACGAATGAA TAAGATCAAAATCAAAGTGATCACGTCAAAGGATGAATACAATAAGATGT CCAAAGGTGAAGAATTGATGAGCACCGATCAATTAAATGATGTGAAAGAC ATGTTCTATGATATTTTGGTTCGTGTTCGAACGATCAACAAACAAGAAGC TGACAAATTAGAAACCAATCATGATATGGATGAAAAAACAGAAATGAGAG CACGAGAGTTGGAAGAAAAAGTCAAAAAGCAATTGGAATCACTCGGTTTA GACGTCAAGATNATTCCCTCACCACCCTGATCAAGAGGAACGAGAGGAGA TGATTAAGGCCTTACCGAAACATTTGAGAGACATTATGCAATCTTTTGAA GAGAAAAAGAAACAACAAAATCATGAAAACAAAGAAGACCGTCAGAATGA AAATCATGAAAAACTGAAAAATAAGAGAGCTAAAAAGTCCATTTCTATGG AAGATATACTTTCTGGAAATGAAGAAGAGGAAAAGGAGGAAGGAGTTGAA GCAATGAAGAAACTAAAAAACGTTGCTGAAGACTTGGATGAAGAGAATAG TGATTTTACCGATTTTTATGAAAGGATCACACATAAAGAAGATGTTTTTA ATAGGAATAAAAGGGAATCAAGTGAACAAGACATCGAAAAAGAAATAGCA GAACAAAGGAAGAAAGATTTAAAGGGTGGAAGTCAGGAAAAGAAGAAGGA AGAACAGCGTCAACAATCACTAGAAGAAAGTTACATGAAGAAATGGAATG AAAATGAAAATGACGACGAATGAATAAGATCAAAATCAAAGTGATCACGT CAAAGGATGAATACAATAAGATGTCCAAAGGTGAAGAATTGATGAGCACC GATCAATTAAATGATGTGAAAGACATGTTCTATGATATTTTGGTTCGTGT TCGAACGATCAACAAACAAGAAGCTGACAAATTAGAAACCAATCATGATA TGGATGAAAAAACAGAAATGAGAGCACGAGAGTTGGAAGAAAAAGTCAAA AAGCAATTGGAATCACTCGGTTTAGACGTCAAGATNATTCCCTCACCACC CTGATCAAGAGGAACGAGAGGAGATGATTAAGGCCTTACCGAAACATTTG AGAGACATTATGCAATCTTTTGAAGAGAAAAAGAAACAACAAAATCATGA AAACAAAGAAGACCGTCAGAATGAAAATCATGAAAAACTGAAAAATAAGA GAGCTAAAAAGTCCATTTCTATGGAAGATATACTTTCTGGAAATGAAGAA GAGGAAAAGGAGGAAGGAGTTGAAGCAATGAAGAAACTAAAAAACGTTGC TGAAGACTTGGATGAAGAGAATAGTGATTTTACCGATTTTTATGAAAGGA TCACACATAAAGAAGATGTTTTTAATAGGAATAAAAGGGAATCAAGTGAA CAAGACATCGAAAAAGAAATAGCAGAACAAAGGAAGAAAGATTTAAAGGG TGGAAGTCAGGAAAAGAAGAAGGAAGAACAGCGTCAACAATCACTAGAAG AAAGTTACATGAAGAAATGGAATGAAAATGAAAATGACGACGAATGAATA AGATCAAAATCAAAGTGATCACGTCAAAGGATGAATACAATAAGATGTCC AAAGGTGAAGAATTGATGAGCACCGATCAATTAAATGATGTGAAAGACAT GTTCTATGATATTTTGGTTCGTGTTCGAACGATCAACAAACAAGAAGCTG ACAAATTAGAAACCAATCATGATATGGATGAAAAAACAGAAATGAGAGCA CGAGAGTTGGAAGAAAAAGTCAAAAAGCAATTGGAATCACTCGGTTTAGA CGTCAAGATNATTCCCTCACCACCCTGATCAAGAGGAACGAGAGGAGATG ATTAAGGCCTTACCGAAACATTTGAGAGACATTATGCAATCTTTTGAAGA GAAAAAGAAACAACAAAATCATGAAAACAAAGAAGACCGTCAGAATGAAA ATCATGAAAAACTGAAAAATAAGAGAGCTAAAAAGTCCATTTCTATGGAA GATATACTTTCTGGAAATGAAGAAGAGGAAAAGGAGGAAGGAGTTGAAGC AATGAAGAAACTAAAAAACGTTGCTGAAGACTTGGATGAAGAGAATAGTG ATTTTACCGATTTTTATGAAAGGATCACACATAAAGAAGATGTTTTTAAT AGGAATAAAAGGGAATCAAGTGAACAAGACATCGAAAAAGAAATAGCAGA ACAAAGGAAGAAAGATTTAAAGGGTGGAAGTCAGGAAAAGAAGAAGGAAG AACAGCGTCAACAATCACTAGAAGAAAGTTACATGAAGAAATGGAATGAA AATGAAAATGACGACGAATGAATAAGATCAAAATCAAAGTGATCACGTCA AAGGATGAATACAATAAGATGTCCAAAGGTGAAGAATTGATGAGCACCGA TCAATTAAATGATGTGAAAGACATGTTCTATGATATTTTGGTTCGTGTTC GAACGATCAACAAACAAGAAGCTGACAAATTAGAAACCAATCATGATATG GATGAAAAAACAGAAATGAGAGCACGAGAGTTGGAAGAAAAAGTCAAAAA GCAATTGGAATCACTCGGTTTAGACGTCAAGATNATTCCCTCACCACCCT GATCAAGAGGAACGAGAGGAGATGATTAAGGCCTTACCGAAACATTTGAG AGACATTATGCAATCTTTTGAAGAGAAAAAGAAACAACAAAATCATGAAA ACAAAGAAGACCGTCAGAATGAAAATCATGAAAAACTGAAAAATAAGAGA GCTAAAAAGTCCATTTCTATGGAAGATATACTTTCTGGAAATGAAGAAGA GGAAAAGGAGGAAGGAGTTGAAGCAATGAAGAAACTAAAAAACGTTGCTG AAGACTTGGATGAAGAGAATAGTGATTTTACCGATTTTTATGAAAGGATC ACACATAAAGAAGATGTTTTTAATAGGAATAAAAGGGAATCAAGTGAACA AGACATCGAAAAAGAAATAGCAGAACAAAGGAAGAAAGATTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00010104-exon-sc0000102-1575043694:228976..229390 | TCONS_00010104-exon-sc0000102-1575043694:228976..229390 | Clytia hemisphaerica | exon |
TCONS_00010104-exon-sc0000102-1575043694:227967..228108 | TCONS_00010104-exon-sc0000102-1575043694:227967..228108 | Clytia hemisphaerica | exon |
TCONS_00010104-exon-sc0000102-1575043694:227262..227380 | TCONS_00010104-exon-sc0000102-1575043694:227262..227380 | Clytia hemisphaerica | exon |
TCONS_00010104-exon-sc0000102-1575043694:225160..226405 | TCONS_00010104-exon-sc0000102-1575043694:225160..226405 | Clytia hemisphaerica | exon |
TCONS_00010104-exon-sc0000102-1510915933:228976..229390 | TCONS_00010104-exon-sc0000102-1510915933:228976..229390 | Clytia hemisphaerica | exon |
TCONS_00010104-exon-sc0000102-1510915933:227967..228108 | TCONS_00010104-exon-sc0000102-1510915933:227967..228108 | Clytia hemisphaerica | exon |
TCONS_00010104-exon-sc0000102-1510915933:227262..227380 | TCONS_00010104-exon-sc0000102-1510915933:227262..227380 | Clytia hemisphaerica | exon |
TCONS_00010104-exon-sc0000102-1510915933:225160..226405 | TCONS_00010104-exon-sc0000102-1510915933:225160..226405 | Clytia hemisphaerica | exon |
TCONS_00010104-exon-sc0000102-1491911889:228976..229390 | TCONS_00010104-exon-sc0000102-1491911889:228976..229390 | Clytia hemisphaerica | exon |
TCONS_00010104-exon-sc0000102-1491911889:227967..228108 | TCONS_00010104-exon-sc0000102-1491911889:227967..228108 | Clytia hemisphaerica | exon |
TCONS_00010104-exon-sc0000102-1491911889:227262..227380 | TCONS_00010104-exon-sc0000102-1491911889:227262..227380 | Clytia hemisphaerica | exon |
TCONS_00010104-exon-sc0000102-1491911889:225160..226405 | TCONS_00010104-exon-sc0000102-1491911889:225160..226405 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000102 | supercontig | sc0000102:225160..229390 - |
Blast
The following BLAST results are available for this feature:
|