TCONS_00010103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010103
Unique NameTCONS_00010103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1189

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010103 ID=TCONS_00010103|Name=TCONS_00010103|organism=Clytia hemisphaerica|type=transcript|length=1189bp
CCGTTATTTTACATTTGCCAATTACGTGAGAAAGACCTTTGATGACCTTC
CATTGATGATTTATCCACGAGCTGACCAATAATCACATTGGAAGAAATAT
TGTTCGGTATTGACAAGCTGAAGTAAGGCAGAACCACCAAAAATTATTAG
AAATCGCCGACAAATCAAATCGAAACCGTTCGGCTGTTCATCAGAGATAG
GTCTTATGCAATGAAGATCACAGAAATGATGCACCCTATCACACCTTTAG
CCGTCCGATATTTAAACTCTCCGCCAATGGAATGCCGGACATCAGGTTGC
CATTGTCAACAACCAGTGATTCCATCACCTAAATGCAATTGTCATCAATG
TAAATATTCAGCAATTTACGACTCCTTTAAAGAACGAGAACGCTATCTAC
CCTACGGTCGTCATGAATCTTCGCCACGTTCCCGTCCAATCAAACGTATA
TCGTACGACGATTACCCGTCAATGTCGTCCGTCAGGGGGTACCGAATGGA
ATACGAGAGACATTTAGCTGAACGACATATGATCCATCGGCGATACGACG
ATTCTTTACGTTTTAGAAAACCGTTATCACCACCTTCTTTAGTCATCAAA
GAAGAAAAACCGATTCTTTATCGCCCGTCGCCGGTTTCTCCAGCATCCTC
CCTGTCTCCGACGTATCGTCAATTGTCGCCAAAATCGCCGGGCGTGAACT
ACCGATTGATGTCGCCACCTTCAGAGCCAACAACTTCACGTAAAGACTTC
AAACCACCACAACGCGTGCGACAGAAGCGTCGTTTCCAGTGTATgtactg
tgaaaaaagttttggtAAGTCATCACATTTGAGAGATCATCATCGGACCC
ATAGTGGTGAGCGCCCATTTGGCTGCCGGTTCTGTGGAAAAGCCTTCTCT
CAATTCTCCAATTTGCGAACGCATCTACGTATTCATACGGGTGAGAAACC
GTTCAAGTGTGGCGTTTGTGACAAATCTTTTACACAGCGCGTTACGCTAC
GTAGTCACATGCGAACCCATTCAAACAGcaaaaagtttttcgaaaaataa
tagTGGCTGGCTACCATCCAAAGTCAAAAGATCAACATAATGTTTCTTTA
TTTGTTATTGTATATTATCTtgatgtaaaatattttttgatgtttataaA
TAGTTGTAACATAAtccaattaaaaataaaatgaaaagc
Run BLAST on NCBI

protein sequence of TCONS_00010103-protein

>TCONS_00010103-protein ID=TCONS_00010103-protein|Name=TCONS_00010103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MKITEMMHPITPLAVRYLNSPPMECRTSGCHCQQPVIPSPKCNCHQCKYS
AIYDSFKERERYLPYGRHESSPRSRPIKRISYDDYPSMSSVRGYRMEYER
HLAERHMIHRRYDDSLRFRKPLSPPSLVIKEEKPILYRPSPVSPASSLSP
TYRQLSPKSPGVNYRLMSPPSEPTTSRKDFKPPQRVRQKRRFQCMYCEKS
FGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKC
GVCDKSFTQRVTLRSHMRTHSNSKKFFEK
Run BLAST on NCBI

transcript from alignment at sc0000102:183314..185236-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010103 ID=TCONS_00010103|Name=TCONS_00010103|organism=Clytia hemisphaerica|type=transcript|length=1923bp|location=Sequence derived from alignment at sc0000102:183314..185236- (Clytia hemisphaerica)
CCGTTATTTTACATTTGCCAATTACGTGAGAAAGACCTTTGATGACCTTC
CATTGATGATTTATCCACGAGCTGACCAATAATCACATTGGAAGAAATAT
TGTTCGGTATTGACAAGCTGAAGTAAGGCAGAACCACCAAAAATTATTAG
AAATCGCCGACAAATCAAATCGAAACCGTTCGGCTGTTCATCAGAGATAG
GTAATTACAACGGATTGTTTTGTGTGACATTTTTTGTACATTCTCGCTTA
TTCAACCTTCTATTATTCTAACCTTTCTATAATTCCAACTCATCCACAGT
CCCTGTCAAGGAGAAATATCTCTGTAATTCGAACAAATAAGATTCCTCGG
CGTTCGAATTCGAATAAGAGAGAGTCAACTGTATTTACAATAATTTGTTC
ACCAAGTTGTAATGATAACACTGTTCAATACCTTTTGGATTCACGCTTAT
TGATTTTAAATGCCGATTTAGAGGTTATTTATTAAGTAATATATTAAGAA
TCAGATCAATCTAAAGCTCAAGAAGACTGTTTTAATACTGAGTCGGAATA
TCATTCTTTCCAGGTCTTATGCAATGAAGATCACAGAAATGATGCACCCT
ATCACACCTTTAGCCGTCCGATATTTAAACTCTCCGCCAATGGAATGCCG
GACATCAGGTTGCCATTGTCAACAACCAGTGATTCCATCACCTAAATGCA
ATTGTCATCAATGTAAGTATATTATAGATATTGTCTTTAAGATCCACAGC
TTTCTGAGTTAGATTCAAACTTGGGTAAAGAGCAGGTCGATGTAAAATTG
TTGATTTATGTAACCAAAACAGTACGTATATTACAGTGAAAACGGTGTAT
CTAAAATACAAGGTATGTTGCAGTAGAGATGGGCTTTAAAATAAAATGAA
TTTTTTGATTTGAGTTTCCCAAAGATCTTTGTTGTTCAAATTTTAAGTAA
CAATCTTCTGGAACTTTAGTTAATTTATCATAAATATTTTGTTTTCTTTA
AATTGTGGGGATCTAATCTACAGGTTACCAGTTTAAATTGTCAATTTCAA
TTTTATAATTTTGTTCACTTTATCTTTATTCAGGTAAATATTCAGCAATT
TACGACTCCTTTAAAGAACGAGAACGCTATCTACCCTACGGTCGTCATGA
ATCTTCGCCACGTTCCCGTCCAATCAAACGTATATCGTACGACGATTACC
CGTCAATGTCGTCCGTCAGGGGGTACCGAATGGAATACGAGAGACATTTA
GCTGAACGACATATGATCCATCGGCGATACGACGATTCTTTACGTTTTAG
AAAACCGTTATCACCACCTTCTTTAGTCATCAAAGAAGAAAAACCGATTC
TTTATCGCCCGTCGCCGGTTTCTCCAGCATCCTCCCTGTCTCCGACGTAT
CGTCAATTGTCGCCAAAATCGCCGGGCGTGAACTACCGATTGATGTCGCC
ACCTTCAGAGCCAACAACTTCACGTAAAGACTTCAAACCACCACAACGCG
TGCGACAGAAGCGTCGTTTCCAGTGTATGTACTGTGAAAAAAGTTTTGGT
AAGTCATCACATTTGAGAGATCATCATCGGACCCATAGTGGTGAGCGCCC
ATTTGGCTGCCGGTTCTGTGGAAAAGCCTTCTCTCAATTCTCCAATTTGC
GAACGCATCTACGTATTCATACGGGTGAGAAACCGTTCAAGTGTGGCGTT
TGTGACAAATCTTTTACACAGCGCGTTACGCTACGTAGTCACATGCGAAC
CCATTCAAACAGCAAAAAGTTTTTCGAAAAATAATAGTGGCTGGCTACCA
TCCAAAGTCAAAAGATCAACATAATGTTTCTTTATTTGTTATTGTATATT
ATCTTGATGTAAAATATTTTTTGATGTTTATAAATAGTTGTAACATAATC
CAATTAAAAATAAAATGAAAAGC

Coding sequence (CDS) from alignment at sc0000102:183314..185236-

>TCONS_00010103 ID=TCONS_00010103|Name=TCONS_00010103|organism=Clytia hemisphaerica|type=CDS|length=1680bp|location=Sequence derived from alignment at sc0000102:183314..185236- (Clytia hemisphaerica)
GTAAATATTCAGCAATTTACGACTCCTTTAAAGAACGAGAACGCTATCTA
CCCTACGGTCGTCATGAATCTTCGCCACGTTCCCGTCCAATCAAACGTAT
ATCGTACGACGATTACCCGTCAATGTCGTCCGTCAGGGGGTACCGAATGG
AATACGAGAGACATTTAGCTGAACGACATATGATCCATCGGCGATACGAC
GATTCTTTACGTTTTAGAAAACCGTTATCACCACCTTCTTTAGTCATCAA
AGAAGAAAAACCGATTCTTTATCGCCCGTCGCCGGTTTCTCCAGCATCCT
CCCTGTCTCCGACGTATCGTCAATTGTCGCCAAAATCGCCGGGCGTGAAC
TACCGATTGATGTCGCCACCTTCAGAGCCAACAACTTCACGTAAAGACTT
CAAACCACCACAACGCGTGCGACAGAAGCGTCGTTTCCAGTGTATGTACT
GTGAAAAAAGTTTTGGTAAGTCATCACATTTGAGAGATCATCATCGGACC
CATAGTGGTGAGCGCCCATTTGGCTGCCGGTTCTGTGGAAAAGCCTTCTC
TCAATTCTCCAATTTGCGAACGCATCTACGTATTCATACGGGTGAGAAAC
CGTTCAAGTGTGGCGTTTGTGACAAATCTTTTACACAGCGCGTTACGCTA
CGTAGTCACATGCGAACCCATTCAAACAGCAAAAAGTTTTTCGAAAAATA
AATGAAGATCACAGAAATGATGCACCCTATCACACCTTTAGCCGTCCGAT
ATTTAAACTCTCCGCCAATGGAATGCCGGACATCAGGTTGCCATTGTCAA
CAACCAGTGATTCCATCACCTAAATGCAATTGTCATCAATGTAAATATTC
AGCAATTTACGACTCCTTTAAAGAACGAGAACGCTATCTACCCTACGGTC
GTCATGAATCTTCGCCACGTTCCCGTCCAATCAAACGTATATCGTACGAC
GATTACCCGTCAATGTCGTCCGTCAGGGGGTACCGAATGGAATACGAGAG
ACATTTAGCTGAACGACATATGATCCATCGGCGATACGACGATTCTTTAC
GTTTTAGAAAACCGTTATCACCACCTTCTTTAGTCATCAAAGAAGAAAAA
CCGATTCTTTATCGCCCGTCGCCGGTTTCTCCAGCATCCTCCCTGTCTCC
GACGTATCGTCAATTGTCGCCAAAATCGCCGGGCGTGAACTACCGATTGA
TGTCGCCACCTTCAGAGCCAACAACTTCACGTAAAGACTTCAAACCACCA
CAACGCGTGCGACAGAAGCGTCGTTTCCAGTGTATGTACTGTGAAAAAAG
TTTTGGTAAGTCATCACATTTGAGAGATCATCATCGGACCCATAGTGGTG
AGCGCCCATTTGGCTGCCGGTTCTGTGGAAAAGCCTTCTCTCAATTCTCC
AATTTGCGAACGCATCTACGTATTCATACGGGTGAGAAACCGTTCAAGTG
TGGCGTTTGTGACAAATCTTTTACACAGCGCGTTACGCTACGTAGTCACA
TGCGAACCCATTCAAACAGCAAAAAGTTTTTCGAAAAATAAATGAAGATC
ACAGAAATGATGCACCCTATCACACCTTTAGCCGTCCGATATTTAAACTC
TCCGCCAATGGAATGCCGGACATCAGGTTGCCATTGTCAACAACCAGTGA
TTCCATCACCTAAATGCAATTGTCATCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005663XLOC_005663Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010103-proteinTCONS_00010103-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010103-exon-sc0000102-1575043694:185037..185236TCONS_00010103-exon-sc0000102-1575043694:185037..185236Clytia hemisphaericaexon
TCONS_00010103-exon-sc0000102-1575043694:184525..184673TCONS_00010103-exon-sc0000102-1575043694:184525..184673Clytia hemisphaericaexon
TCONS_00010103-exon-sc0000102-1575043694:183314..184153TCONS_00010103-exon-sc0000102-1575043694:183314..184153Clytia hemisphaericaexon
TCONS_00010103-exon-sc0000102-1510915933:185037..185236TCONS_00010103-exon-sc0000102-1510915933:185037..185236Clytia hemisphaericaexon
TCONS_00010103-exon-sc0000102-1510915933:184525..184673TCONS_00010103-exon-sc0000102-1510915933:184525..184673Clytia hemisphaericaexon
TCONS_00010103-exon-sc0000102-1510915933:183314..184153TCONS_00010103-exon-sc0000102-1510915933:183314..184153Clytia hemisphaericaexon
TCONS_00010103-exon-sc0000102-1491911889:185037..185236TCONS_00010103-exon-sc0000102-1491911889:185037..185236Clytia hemisphaericaexon
TCONS_00010103-exon-sc0000102-1491911889:184525..184673TCONS_00010103-exon-sc0000102-1491911889:184525..184673Clytia hemisphaericaexon
TCONS_00010103-exon-sc0000102-1491911889:183314..184153TCONS_00010103-exon-sc0000102-1491911889:183314..184153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:183314..185236 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.977448	0.423629	0.204948	0.200509	0	0.115735	0.139629	0.217865	0.671144	0.264511	0.146709	1.13318	5.87471	5.8259	0.143896	0.198543	10.7347	11.5041	8.58177	6.20158	9.45052	10.7046	1.70184	2.26422	5.32495	5.16866	0.198559	0.105954	0.120543	0.0818765
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00010103 vs. Swiss-Prot (Human)
Match: ZN782 (Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.903e-24
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:  784 FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSK 1032
            ++C  C K+FG+ S LR HHR H+GE+P+ C  CG+AFSQ SNLR H R HTGEKP++C  C K+F Q+  LR H RTH+  K
Sbjct:  534 YKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEK 616

HSP 2 Score: 99.3673 bits (246), Expect = 2.087e-22
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:  784 FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSK 1032
            ++C +C ++F + S+LR HHRTH+GE+P+ C  CGK F Q SNLR H R HTGEKP++C  C K+F+++  LR H RTH+  K
Sbjct:  562 YKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEK 644

HSP 3 Score: 98.9821 bits (245), Expect = 2.435e-22
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:  775 KRRFQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSK 1032
            +R ++C  C K+F   S LR HHRTH+GE+P+ C  CGKAF Q S LR H RIHTGEKP+KC  C ++F+Q+  LR H RTH+  K
Sbjct:  503 ERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEK 588

HSP 4 Score: 96.6709 bits (239), Expect = 1.513e-21
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:  784 FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTH 1020
            ++C  C K+F + S LR H RTH+GE+P+ C  CG+AFSQ SNLR H R HTGEKP+KC  C ++F+Q+ +LR H + H
Sbjct:  618 YECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQKSSLREHQKAH 696

HSP 5 Score: 96.6709 bits (239), Expect = 1.642e-21
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:  784 FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSK 1032
            +QC  C K+F + S+LR H RTH+GE+P+ C  CGKAFS+ S LR H R HTGEKP+ C  C ++F+Q+  LR H RTH+  K
Sbjct:  590 YQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEK 672

HSP 6 Score: 94.7449 bits (234), Expect = 6.161e-21
Identity = 46/83 (55.42%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:  784 FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSK 1032
            F+C  C KSF   S LR+H RTH+GERP+ C  CGKAF   S LR H R HTGEKP+KC  C K+F Q+  LR H R H+  K
Sbjct:  478 FECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEK 560

HSP 7 Score: 90.8929 bits (224), Expect = 1.273e-19
Identity = 44/83 (53.01%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:  784 FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSK 1032
            F+C  C KSF   S L  H RTH+GE+PF C  CGK+FS  S LR H R HTGE+P+KC  C K+F  +  LR H RTH+  K
Sbjct:  450 FECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEK 532

HSP 8 Score: 90.8929 bits (224), Expect = 1.357e-19
Identity = 53/132 (40.15%), Postives = 72/132 (54.55%), Query Frame = 1 
Query:  682 KSPGVNYRLMSPPSEPTTSR--------KDFKPPQRVRQKRR-------FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSK 1032
            KS  +N  L+ P    T  +        K F    R+R+ +R       ++C  C+K+F   S LR H RTH+GE+PF C  CGK+F+  S L  H R HTGEKPF+C  C KSF+    LR+H RTH+  +
Sbjct:  373 KSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGER 504

HSP 9 Score: 89.7373 bits (221), Expect = 2.904e-19
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:  784 FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSKKF 1038
            ++C  C K+F + S LR H RTH+GE+P+ C  C KAFS  S LR H R HTGEKPF+C  C KSF  +  L  H RTH+  K F
Sbjct:  394 YECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPF 478

HSP 10 Score: 85.1149 bits (209), Expect = 8.931e-18
Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = 1 
Query:  700 YRLMSPPSEPTTSRKDFKPPQRVRQKRR-FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSKKF 1038
            Y    P +E  + +  F   Q+V  + + ++   C KS   +SHL    ++H+GE+P+ C  CGKAFS+ S LR H R HTGEKP+KC  CDK+F+ +  LR H RTH+  K F
Sbjct:  337 YSDYHPCTETFSYQSTFSVHQKVHIRAKPYEYNECGKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPF 450
The following BLAST results are available for this feature:
BLAST of TCONS_00010103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN7826.903e-2455.42Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 ... [more]
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