TCONS_00010099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010099
Unique NameTCONS_00010099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2184

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010099 ID=TCONS_00010099|Name=TCONS_00010099|organism=Clytia hemisphaerica|type=transcript|length=2184bp
GGATGTTATCGAAAATCTGTCAGTGTCATCACAGTTTAGACCTCTCcgaa
caaatcaaaacaaaaatggcggcGAAAAATCGAAagttgaaaacgaaagc
tgcagttccagaaaaatattcttccTCTCCTCAACATGCTTCCACTTCTT
GTCGGCAAAAAGAGAACACAATCAACTATCTCAGAtggtttgttttaatt
tttcttttgctaGCCATTACCCTAACCTTTTCTCATGAGATATTCGGAGT
TATTCATGGCTTTTCTGAGAAATTGAACTCTAAAAAGTGGCCCACCTCGT
CACCACTACAACCACCTGAAACTTCACATGCACATATGGTTGATGTGGGA
GATGATCATCAGGGTTTAAGGGGAGAAAAGTTGACGAATGAGCATGAAAA
CCTTCAGGAAAGTCAAGGAAATGGTCAGAATAAACAGAAAGATTTCGATG
CCACAATTTGTCCTGAAATTTCTATGACTGATGGGGATGTCATAAGACTG
GACAAGCGCAATCTTAAAGTAAAAGAACTGGTACACCAAACTAAAGATAG
TTCAGTTCAGGTGTTCATTGTTGATGATTTTCTAACGAAGGAGGAATGCA
ATGGCTTATCTGGTGCCCATGTTAAACATGCCAAAACATCAAATGAGCTG
GGTCCATTGTTATGCTTTTCAGGAGTTCaatcatttcaaaaatatttaaa
tgagGCTGGTTTGAATGACATCAAAATATCGAATCGTGATTTTATTGAAG
GGACTACTTGTATCAATGAGACCTTTTCAAATCGTTTGAAAACGAAATTT
AAGTGGAGTCACAGTACTGCTTTTTATCGAGATGAAAGTCCGTTTGCATC
GGTTTTTGAGAAACGGGTTGAGGATGTTACTTCATTAGTAAGCAGTCATG
GtgggaaatttcaaattacttCATATCCCAAAGGTGTTGGATATAAAACG
CATACAGATTGCACCCTGAATAGCAAGGAGCTTAGAGACAGATATGCAAC
AACACTTGTCTATCTGCAAAACGTGAAACAGGGTGGAGAAACGAAGTTCC
CTAAACTTGGATTAAGTGTCCGCCCAAAACAAGGGCGTTTGTTAGTATGG
AATAACATGAATCGTAGGGGAAGATGTGATCCTACTTCAGTTCATCATGC
AACTCCAGTTGTAAAAGGAAGGAAATTTATATTACAAAGATGGTATTATT
ATAAGAGTTTTTCATCATTGGGACACCGATCACCAGAGCCAGAATTACCA
AAACGAAAGCCAATGCAGCCACGTGTTGTTTGTGATCATTTCGAAGAAGG
TTCTTGTAGATGGTACGATGAATGGGATTATAACCATTTGAATGATTATA
ATAAAATCGCTGATCAACTTTCATAGTATACAGGAGAAATGGgtagcgta
gacaagggggcgcaaaatttgtgtaggagagcagatttttacgacacagt
aattatctttttatattatgaatagataattacagtatcataaaaatctg
ctttcctacacaaattttgcgcccctcctgtctacgctactggaaATTAA
TATCAGTTCATCCTTAATATCAGATCAATTTTTACACCCTTGCAGCGCAA
CAGATCAGGCCCTCTTATCAACGCTTGCAGTGCCCTTATAGGTTGTTTGG
GAAACTCCTTTAGAGAgcccccccagcggtaactctgatcacgatatcac
ctaattttttgtcttcaatcacgatcatgaaaatcagtgaaaaaaaaTGG
ATAATCATACATCTCTTGGAAAAAAGTTcaaatcacgtatcacggctcaa
aaatctttcaaatcacgatcacgttttgacctctgatcaaTCTAATCACG
CAGCAAGaaagtccctatcacgtcatcacgcaaaccgcttgggGTCCTCT
TTAGAggcttatttcaaaatgattCTTTATAtcctatttttttattataa
gcaaccaggttgaTAAGGCTCGATGGCTCAAACTAGCCAATTACTATgta
tctcgtaaagtaaaagctctTTAGGTATGGTCATATCAGGAGTTGCCAGC
AAATTTTTCAGAGATTGTTAGAAAGCTAATTAATCCTATCCCTgacccaa
aaatttgaattgcttattaatatttaaaaaaatgtgtatgcaACCCCTCG
CTTTGGCTTAAAAACTTTACTATCAATATTTTAA
Run BLAST on NCBI

protein sequence of TCONS_00010099-protein

>TCONS_00010099-protein ID=TCONS_00010099-protein|Name=TCONS_00010099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MLSKICQCHHSLDLSEQIKTKMAAKNRKLKTKAAVPEKYSSSPQHASTSC
RQKENTINYLRWFVLIFLLLAITLTFSHEIFGVIHGFSEKLNSKKWPTSS
PLQPPETSHAHMVDVGDDHQGLRGEKLTNEHENLQESQGNGQNKQKDFDA
TICPEISMTDGDVIRLDKRNLKVKELVHQTKDSSVQVFIVDDFLTKEECN
GLSGAHVKHAKTSNELGPLLCFSGVQSFQKYLNEAGLNDIKISNRDFIEG
TTCINETFSNRLKTKFKWSHSTAFYRDESPFASVFEKRVEDVTSLVSSHG
GKFQITSYPKGVGYKTHTDCTLNSKELRDRYATTLVYLQNVKQGGETKFP
KLGLSVRPKQGRLLVWNNMNRRGRCDPTSVHHATPVVKGRKFILQRWYYY
KSFSSLGHRSPEPELPKRKPMQPRVVCDHFEEGSCRWYDEWDYNHLNDYN
KIADQLS
Run BLAST on NCBI

transcript from alignment at sc0000102:116968..124148-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010099 ID=TCONS_00010099|Name=TCONS_00010099|organism=Clytia hemisphaerica|type=transcript|length=7181bp|location=Sequence derived from alignment at sc0000102:116968..124148- (Clytia hemisphaerica)
GGATGTTATCGAAAATCTGTCAGTGTCATCACAGTTTAGACCTCTCCGAA
CAAATCAAAACAAAAATGGCGGCGAAAAATCGAAAGTTGAAAACGAAAGC
TGCAGTTCCAGAAAAATATTCTTCCTCTCCTCAACATGCTTCCACTTCTT
GTCGGCAAAAAGAGAACACAATCAACTATCTCAGATGGTTTGTTTTAATT
TTTCTTTTGCTAGCCATTACCCTAACCTTTTCTCATGAGATATTCGGAGT
TATTCATGGCTTTTCTGAGAAATTGAACTCTAAAAAGTGGCCCACCTCGT
CACCACTACAACCACCTGAAACTTCACATGCACATATGGTTGATGTGGGA
GATGATCATCAGGGTTTAAGGGGAGAAAAGTTGACGAATGAGCATGAAAA
CCTTCAGGAAAGTCAAGGAAATGGTCAGAATAAACAGAAAGGTAAATAAA
GACACTTTATTTGTTTTGAAATTTTGCTGCTTAGTTTAGATTGGTCAGTC
ATTTGTGATTTGAGGGCTATGCATGTTAGCTTCCACTGATGCAAGTTACC
CGATCTTACGGTATGACGGTCGAGGTCGAGCTACCCTCCTCAGGCCAATA
CCCCAAAAGTAATTACTGCCTCACTCTGAATTATATTCAGCGTACTGTGC
ACATTTCCAGCCTGGCTTCTACATGCTTTTTTTATAAGAAAGGTGTTTTT
TCAATTCATCATAAATATTCTTAAATTTTTGGGGAAAATCATCCTGAAAT
ATTCTTTCTGTATTCTTACCATATTATATTCTATTTTTAGGGCCAATTTC
ATCATAAATATTCTTGTATTTTAAAGTATATTCTTATAAAAAAGCGTGTA
TATGCTTGAGAAAAAGTTCTAGACAAAAGCATTCAAGAAGTATTATTTGC
CCCTCTTAGCTTTTTTTTCGTACATAATTTTATGAAGATCCTCGAGACCC
CTCCCCCCTTTACTTGCAACCCCCCTTAGGATTAGGAAATTCAAGTTTTC
AACATCCCCCATTGTCTAGGTTTCATTAAAATCCAAAATCCTTCCCTAAT
GTAGGGGGGAGGGTACGGTAGAAACTATGGGATCAACAATTATTTGGTAA
TCAAAAGAAGAAAAAAATCGACTTTTACTGTAAAGAAGTACTCAAAAACT
CGCCTAAAGGCTCGGAAAATATTACAAAGAATCTGAACTCAAAAAATATA
TCCCTGTACTCGGTACCGTGCGATAACTAATACTTATTATTATTTGGTAT
CGATATGCTTTATATAAATTTTAATATATGAGGTTGTTTTGACGTTTTAG
AACGCTTTCTGAAAATAAATTTTTTGATTAGATTAATCTTTTTTAATCAT
AGTTTGAGCCTGGGTATCCATATATATAGTGAAGATATGTAATATCTGTC
ATTTTAGAAAGGAATAGTATTGATATATAAATAACTCAAACTGATAAAAA
CGAAAAAAAGTTAAGAATATTTTNNNNNNNNNNNNNNNNNNNNNNGAACA
CCACAACATATATACAAAGTTAATTCTAGACTTCTGGTACACCTTAAAAG
TCGGATACAGTTTGTTTGATACATTTACTTGATTGAAAGCTCAAAACCTT
GAAAACCCAGACAAGGAAACAAAATATGCAGATGATAATCAAGTTAACAG
TAAACATCAATAAAAGGTTTTGATAATATTTTCAGTGATTTACCCTAAAG
TGGTTTTCCAGTTTTTTTTTCAAATCATTTCAAGAATTCATAAAATTTCT
ATGCAAAAGAAAGATGGAGTAATTATCTGAATGTTTTTATCACAGATTTC
GATGCCACAATTTGTCCTGAAATTTCTATGACTGATGGAGATATCATAAG
ACTGGATAAGCGCAATCTTAAAGTAAAAGAATTGGTACACCAAACTAAAG
ATAGTTCAGTTCAGGTGTTCATTGTTGATGATTTTCTAACGAAAGAGGAA
TGCAATGGCTTATCTGGTGCCCATGTTAAACATGCCAAAACATCAAATGA
GCTGGGTCCATTGTTATGCTTTTCAGGAGTTCAATCNCTACGGGCGCGAC
CGACCCAGCATTTACTGCAAATTAAAGAATAATAATATTGAACTTCCTAT
GCCACAAATTTCTAATACTAGTATACTAATAGTCATTTAAAAAATTCACT
CTTTAAAAAAGTTGAAAAGAATCTAGAATCATGAATTCTATGCACGCAAG
ATTTTATTACAAACTCCATCAAAGATGAATGATGAAAATTCGACCAAGAT
TTTTTGAAAATATTACTTAAAGCCTACTACAGTAACCTTCCTTGATTAAT
GAAAGTCTTATTTTTATTTTACCGACCGACCGACTCATATTTTGCCAACA
ATCTGCCTGTAGAACAACAAATTAAATTGGTCTCGCCTTATGTATATATA
TTTACGATTTTTTTGGTATTTTTAATTTTTTAATCATTCCGAAACAGAGG
GTAATTTAGCAAAAAGTTAAAGGGAATTTAAATAGTGGTATGTGAAAGAA
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
TTCCAGTTTTTTTTTCAAATCATTTCAAGAATTCATAAAATTTCTATGCA
AAAGAAAGATGTAGTAATTATCTGAATGTTTTTATCACAGATTTCGATGC
CACAATTTGTCCTGAAATTTCTATGACTGATGGGGATGTCATAAGACTGG
ACAAGCGCAATCTTAAAGTAAAAGAACTGGTACACCAAACTAAAGATAGT
TCAGTTCAGGTGTTCATTGTTGATGATTTTCTAACGAAGGAGGAATGCAA
TGGCTTATCTGGTGCCCATGTTAAACATGCCAAAACATCAAATGAGCTGG
GTCCATTGTTATGCTTTTCAGGAGTTCAATCATTTCAAAAATATTTAAAT
GAGGCTGGTTTGAATGACATCAAAATATCGAATCGTGATTTTATTGAAGG
GACTACTTGTATCAATGAGACCTTTTCAAATCGTTTGAAAACGAAATTTA
AGTGGAGTCACAGTACTGCTTTTTATCGAGATGAAAGTCCGTTTGCATCG
GTTTTTGAGAAACGGGTTGAGGATGTTACTTCATTAGTAAGCAGTCATGG
TGGGAAATTTCAAATTACTTCATATCCCAAAGGTGTTGGTAAGCAAAATT
TAACTGTTATATTCTGGTTTAAAATTGGATATTTTATTTACAATAGTAGA
AATGAATTTCCACTAAATTTTCAGTTCAGGTTTATGTTTTTCTTGAACTG
AATTGTTTACAAAAGTTCGTTGCTTATTTTCTCTAAGTTTTATTTTTAAA
ACTCTTGTTTATATAAAACAAACGATTTTAAAAGCTTATTCAAATAATAC
CCGACTGTCATGCAATCTAAGGTTTTTTTCAAACAATTTCAGGATATAAA
ACGCATACAGATTGCACCCTGAATAGCAAGGAGCTTAGAGACAGATATGC
AACAACACTTGTCTATCTGCAAAACGTGAAACAGGGTGGAGAAACGAAGT
TCCCTAAACTTGGATTAAGTGTCCGCCCAAAACAAGGGCGTTTGTTAGTA
TGGAATAACATGAATCGTAGGGGAAGATGTGATCCTACTTCAGTTCATCA
TGCAACTCCAGTTGTAAAAGGAAGGAAATTTATATTACAAAGATGGTAGG
TTCAGCTTGAATGTTGAAGTTTAAATGATATATATGTGAAGAAATAAGAA
TTTCTGTCCAACTATATTCACTCAGGAGATTTGGGTGGCAGAGCAGCATA
TGCAGTTCGTCCTTATTAGGACTCGTCAGCACTGCATACTGCACCCTGGC
TGGCAGATTGATTTAGCCAGCATCTCTAAACCACAAAATCACTTGTGGTT
CAAACTGAGAGAAATAGTGGACAGAAGGTTTTTCGTGTTTTAGATAAAAA
AAACGAAATGGTCTCGATTTTGTTGTTGTAATGGTACAGATACTGGTATA
ATAGTGTTTTTTTTTCCAAAAATATATAACAGTATGATCTAGTTCAATAC
TTTAAAGTAATCTTTTTTTCTCTCCTTTTGCTCTTCTAGGTATTATTATA
AGAGTTTTTCATCATTGGGACACCGATCACCAGAGCCAGAATTACCAAAA
CGAAAGCCAATGCAGCCACGTGTTGTTTGTGATCATTTCGAAGAAGGTTC
TTGTAGATGGTACGATGAATGGGATTATAACCATTTGAATGATTATAATA
AAATCGCTGATCAACTTTCATAGTATACAGGAGAAATGGGTAGCGTAGAC
AAGGGGGCGCAAAATTTGTGTAGGAGAGCAGATTTTTACGACACAGTAAT
TATCTTTTTATATTATGAATAGATAATTACAGTATCATAAAAATCTGCTT
TCCTACACAAATTTTGCGCCCCTCCTGTCTACGCTACTGGAAATTAATAT
CAGTTCATCCTTAATATCAGATCAATTTTTACACCCTTGCAGCGCAACAG
ATCAGGCCCTCTTATCAACGCTTGCAGTGCCCTTATAGGTTGTTTGGGAA
ACTCCTTTAGAGAGCCCCCCCAGCGGTAACTCTGATCACGATATCACCTA
ATTTTTTGTCTTCAATCACGATCATGAAAATCAGTGAAAAAAAATGGATA
ATCATACATCTCTTGGAAAAAAGTTCAAATCACGTATCACGGCTCAAAAA
TCTTTCAAATCACGATCACGTTTTGACCTCTGATCAATCTAATCACGCAG
CAAGAAAGTCCCTATCACGTCATCACGCAAACCGCTTGGGGTCCTCTTTA
GAGGCTTATTTCAAAATGATTCTTTATATCCTATTTTTTTATTATAAGCA
ACCAGGTTGATAAGGCTCGATGGCTCAAACTAGCCAATTACTATGTATCT
CGTAAAGTAAAAGCTCTTTAGGTATGGTCATATCAGGAGTTGCCAGCAAA
TTTTTCAGAGATTGTTAGAAAGCTAATTAATCCTATCCCTGACCCAAAAA
TTTGAATTGCTTATTAATATTTAAAAAAATGTGTATGCAACCCCTCGCTT
TGGCTTAAAAACTTTACTATCAATATTTTAA

Coding sequence (CDS) from alignment at sc0000102:116968..124148-

>TCONS_00010099 ID=TCONS_00010099|Name=TCONS_00010099|organism=Clytia hemisphaerica|type=CDS|length=5496bp|location=Sequence derived from alignment at sc0000102:116968..124148- (Clytia hemisphaerica)
GTATTATTATAAGAGTTTTTCATCATTGGGACACCGATCACCAGAGCCAG
AATTACCAAAACGAAAGCCAATGCAGCCACGTGTTGTTTGTGATCATTTC
GAAGAAGGTTCTTGTAGATGGTACGATGAATGGGATTATAACCATTTGAA
TGATTATAATAAAATCGCTGATCAACTTTCATAGGATATAAAACGCATAC
AGATTGCACCCTGAATAGCAAGGAGCTTAGAGACAGATATGCAACAACAC
TTGTCTATCTGCAAAACGTGAAACAGGGTGGAGAAACGAAGTTCCCTAAA
CTTGGATTAAGTGTCCGCCCAAAACAAGGGCGTTTGTTAGTATGGAATAA
CATGAATCGTAGGGGAAGATGTGATCCTACTTCAGTTCATCATGCAACTC
CAGTTGTAAAAGGAAGGAAATTTATATTACAAAGATGATTTCGATGCCAC
AATTTGTCCTGAAATTTCTATGACTGATGGGGATGTCATAAGACTGGACA
AGCGCAATCTTAAAGTAAAAGAACTGGTACACCAAACTAAAGATAGTTCA
GTTCAGGTGTTCATTGTTGATGATTTTCTAACGAAGGAGGAATGCAATGG
CTTATCTGGTGCCCATGTTAAACATGCCAAAACATCAAATGAGCTGGGTC
CATTGTTATGCTTTTCAGGAGTTCAATCATTTCAAAAATATTTAAATGAG
GCTGGTTTGAATGACATCAAAATATCGAATCGTGATTTTATTGAAGGGAC
TACTTGTATCAATGAGACCTTTTCAAATCGTTTGAAAACGAAATTTAAGT
GGAGTCACAGTACTGCTTTTTATCGAGATGAAAGTCCGTTTGCATCGGTT
TTTGAGAAACGGGTTGAGGATGTTACTTCATTAGTAAGCAGTCATGGTGG
GAAATTTCAAATTACTTCATATCCCAAAGGTGTTGATGTTATCGAAAATC
TGTCAGTGTCATCACAGTTTAGACCTCTCCGAACAAATCAAAACAAAAAT
GGCGGCGAAAAATCGAAAGTTGAAAACGAAAGCTGCAGTTCCAGAAAAAT
ATTCTTCCTCTCCTCAACATGCTTCCACTTCTTGTCGGCAAAAAGAGAAC
ACAATCAACTATCTCAGATGGTTTGTTTTAATTTTTCTTTTGCTAGCCAT
TACCCTAACCTTTTCTCATGAGATATTCGGAGTTATTCATGGCTTTTCTG
AGAAATTGAACTCTAAAAAGTGGCCCACCTCGTCACCACTACAACCACCT
GAAACTTCACATGCACATATGGTTGATGTGGGAGATGATCATCAGGGTTT
AAGGGGAGAAAAGTTGACGAATGAGCATGAAAACCTTCAGGAAAGTCAAG
GAAATGGTCAGAATAAACAGAAAGGTATTATTATAAGAGTTTTTCATCAT
TGGGACACCGATCACCAGAGCCAGAATTACCAAAACGAAAGCCAATGCAG
CCACGTGTTGTTTGTGATCATTTCGAAGAAGGTTCTTGTAGATGGTACGA
TGAATGGGATTATAACCATTTGAATGATTATAATAAAATCGCTGATCAAC
TTTCATAGGATATAAAACGCATACAGATTGCACCCTGAATAGCAAGGAGC
TTAGAGACAGATATGCAACAACACTTGTCTATCTGCAAAACGTGAAACAG
GGTGGAGAAACGAAGTTCCCTAAACTTGGATTAAGTGTCCGCCCAAAACA
AGGGCGTTTGTTAGTATGGAATAACATGAATCGTAGGGGAAGATGTGATC
CTACTTCAGTTCATCATGCAACTCCAGTTGTAAAAGGAAGGAAATTTATA
TTACAAAGATGATTTCGATGCCACAATTTGTCCTGAAATTTCTATGACTG
ATGGGGATGTCATAAGACTGGACAAGCGCAATCTTAAAGTAAAAGAACTG
GTACACCAAACTAAAGATAGTTCAGTTCAGGTGTTCATTGTTGATGATTT
TCTAACGAAGGAGGAATGCAATGGCTTATCTGGTGCCCATGTTAAACATG
CCAAAACATCAAATGAGCTGGGTCCATTGTTATGCTTTTCAGGAGTTCAA
TCATTTCAAAAATATTTAAATGAGGCTGGTTTGAATGACATCAAAATATC
GAATCGTGATTTTATTGAAGGGACTACTTGTATCAATGAGACCTTTTCAA
ATCGTTTGAAAACGAAATTTAAGTGGAGTCACAGTACTGCTTTTTATCGA
GATGAAAGTCCGTTTGCATCGGTTTTTGAGAAACGGGTTGAGGATGTTAC
TTCATTAGTAAGCAGTCATGGTGGGAAATTTCAAATTACTTCATATCCCA
AAGGTGTTGATGTTATCGAAAATCTGTCAGTGTCATCACAGTTTAGACCT
CTCCGAACAAATCAAAACAAAAATGGCGGCGAAAAATCGAAAGTTGAAAA
CGAAAGCTGCAGTTCCAGAAAAATATTCTTCCTCTCCTCAACATGCTTCC
ACTTCTTGTCGGCAAAAAGAGAACACAATCAACTATCTCAGATGGTTTGT
TTTAATTTTTCTTTTGCTAGCCATTACCCTAACCTTTTCTCATGAGATAT
TCGGAGTTATTCATGGCTTTTCTGAGAAATTGAACTCTAAAAAGTGGCCC
ACCTCGTCACCACTACAACCACCTGAAACTTCACATGCACATATGGTTGA
TGTGGGAGATGATCATCAGGGTTTAAGGGGAGAAAAGTTGACGAATGAGC
ATGAAAACCTTCAGGAAAGTCAAGGAAATGGTCAGAATAAACAGAAAGGT
ATTATTATAAGAGTTTTTCATCATTGGGACACCGATCACCAGAGCCAGAA
TTACCAAAACGAAAGCCAATGCAGCCACGTGTTGTTTGTGATCATTTCGA
AGAAGGTTCTTGTAGATGGTACGATGAATGGGATTATAACCATTTGAATG
ATTATAATAAAATCGCTGATCAACTTTCATAGGATATAAAACGCATACAG
ATTGCACCCTGAATAGCAAGGAGCTTAGAGACAGATATGCAACAACACTT
GTCTATCTGCAAAACGTGAAACAGGGTGGAGAAACGAAGTTCCCTAAACT
TGGATTAAGTGTCCGCCCAAAACAAGGGCGTTTGTTAGTATGGAATAACA
TGAATCGTAGGGGAAGATGTGATCCTACTTCAGTTCATCATGCAACTCCA
GTTGTAAAAGGAAGGAAATTTATATTACAAAGATGATTTCGATGCCACAA
TTTGTCCTGAAATTTCTATGACTGATGGGGATGTCATAAGACTGGACAAG
CGCAATCTTAAAGTAAAAGAACTGGTACACCAAACTAAAGATAGTTCAGT
TCAGGTGTTCATTGTTGATGATTTTCTAACGAAGGAGGAATGCAATGGCT
TATCTGGTGCCCATGTTAAACATGCCAAAACATCAAATGAGCTGGGTCCA
TTGTTATGCTTTTCAGGAGTTCAATCATTTCAAAAATATTTAAATGAGGC
TGGTTTGAATGACATCAAAATATCGAATCGTGATTTTATTGAAGGGACTA
CTTGTATCAATGAGACCTTTTCAAATCGTTTGAAAACGAAATTTAAGTGG
AGTCACAGTACTGCTTTTTATCGAGATGAAAGTCCGTTTGCATCGGTTTT
TGAGAAACGGGTTGAGGATGTTACTTCATTAGTAAGCAGTCATGGTGGGA
AATTTCAAATTACTTCATATCCCAAAGGTGTTGATGTTATCGAAAATCTG
TCAGTGTCATCACAGTTTAGACCTCTCCGAACAAATCAAAACAAAAATGG
CGGCGAAAAATCGAAAGTTGAAAACGAAAGCTGCAGTTCCAGAAAAATAT
TCTTCCTCTCCTCAACATGCTTCCACTTCTTGTCGGCAAAAAGAGAACAC
AATCAACTATCTCAGATGGTTTGTTTTAATTTTTCTTTTGCTAGCCATTA
CCCTAACCTTTTCTCATGAGATATTCGGAGTTATTCATGGCTTTTCTGAG
AAATTGAACTCTAAAAAGTGGCCCACCTCGTCACCACTACAACCACCTGA
AACTTCACATGCACATATGGTTGATGTGGGAGATGATCATCAGGGTTTAA
GGGGAGAAAAGTTGACGAATGAGCATGAAAACCTTCAGGAAAGTCAAGGA
AATGGTCAGAATAAACAGAAAGGTATTATTATAAGAGTTTTTCATCATTG
GGACACCGATCACCAGAGCCAGAATTACCAAAACGAAAGCCAATGCAGCC
ACGTGTTGTTTGTGATCATTTCGAAGAAGGTTCTTGTAGATGGTACGATG
AATGGGATTATAACCATTTGAATGATTATAATAAAATCGCTGATCAACTT
TCATAGGATATAAAACGCATACAGATTGCACCCTGAATAGCAAGGAGCTT
AGAGACAGATATGCAACAACACTTGTCTATCTGCAAAACGTGAAACAGGG
TGGAGAAACGAAGTTCCCTAAACTTGGATTAAGTGTCCGCCCAAAACAAG
GGCGTTTGTTAGTATGGAATAACATGAATCGTAGGGGAAGATGTGATCCT
ACTTCAGTTCATCATGCAACTCCAGTTGTAAAAGGAAGGAAATTTATATT
ACAAAGATGATTTCGATGCCACAATTTGTCCTGAAATTTCTATGACTGAT
GGGGATGTCATAAGACTGGACAAGCGCAATCTTAAAGTAAAAGAACTGGT
ACACCAAACTAAAGATAGTTCAGTTCAGGTGTTCATTGTTGATGATTTTC
TAACGAAGGAGGAATGCAATGGCTTATCTGGTGCCCATGTTAAACATGCC
AAAACATCAAATGAGCTGGGTCCATTGTTATGCTTTTCAGGAGTTCAATC
ATTTCAAAAATATTTAAATGAGGCTGGTTTGAATGACATCAAAATATCGA
ATCGTGATTTTATTGAAGGGACTACTTGTATCAATGAGACCTTTTCAAAT
CGTTTGAAAACGAAATTTAAGTGGAGTCACAGTACTGCTTTTTATCGAGA
TGAAAGTCCGTTTGCATCGGTTTTTGAGAAACGGGTTGAGGATGTTACTT
CATTAGTAAGCAGTCATGGTGGGAAATTTCAAATTACTTCATATCCCAAA
GGTGTTGATGTTATCGAAAATCTGTCAGTGTCATCACAGTTTAGACCTCT
CCGAACAAATCAAAACAAAAATGGCGGCGAAAAATCGAAAGTTGAAAACG
AAAGCTGCAGTTCCAGAAAAATATTCTTCCTCTCCTCAACATGCTTCCAC
TTCTTGTCGGCAAAAAGAGAACACAATCAACTATCTCAGATGGTTTGTTT
TAATTTTTCTTTTGCTAGCCATTACCCTAACCTTTTCTCATGAGATATTC
GGAGTTATTCATGGCTTTTCTGAGAAATTGAACTCTAAAAAGTGGCCCAC
CTCGTCACCACTACAACCACCTGAAACTTCACATGCACATATGGTTGATG
TGGGAGATGATCATCAGGGTTTAAGGGGAGAAAAGTTGACGAATGAGCAT
GAAAACCTTCAGGAAAGTCAAGGAAATGGTCAGAATAAACAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005661XLOC_005661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010099-exon-sc0000102-1575043694:123708..124148TCONS_00010099-exon-sc0000102-1575043694:123708..124148Clytia hemisphaericaexon
TCONS_00010099-exon-sc0000102-1575043694:118861..119358TCONS_00010099-exon-sc0000102-1575043694:118861..119358Clytia hemisphaericaexon
TCONS_00010099-exon-sc0000102-1575043694:118354..118606TCONS_00010099-exon-sc0000102-1575043694:118354..118606Clytia hemisphaericaexon
TCONS_00010099-exon-sc0000102-1575043694:116968..117959TCONS_00010099-exon-sc0000102-1575043694:116968..117959Clytia hemisphaericaexon
TCONS_00010099-exon-sc0000102-1510915933:123708..124148TCONS_00010099-exon-sc0000102-1510915933:123708..124148Clytia hemisphaericaexon
TCONS_00010099-exon-sc0000102-1510915933:118861..119358TCONS_00010099-exon-sc0000102-1510915933:118861..119358Clytia hemisphaericaexon
TCONS_00010099-exon-sc0000102-1510915933:118354..118606TCONS_00010099-exon-sc0000102-1510915933:118354..118606Clytia hemisphaericaexon
TCONS_00010099-exon-sc0000102-1510915933:116968..117959TCONS_00010099-exon-sc0000102-1510915933:116968..117959Clytia hemisphaericaexon
TCONS_00010099-exon-sc0000102-1491911889:123708..124148TCONS_00010099-exon-sc0000102-1491911889:123708..124148Clytia hemisphaericaexon
TCONS_00010099-exon-sc0000102-1491911889:118861..119358TCONS_00010099-exon-sc0000102-1491911889:118861..119358Clytia hemisphaericaexon
TCONS_00010099-exon-sc0000102-1491911889:118354..118606TCONS_00010099-exon-sc0000102-1491911889:118354..118606Clytia hemisphaericaexon
TCONS_00010099-exon-sc0000102-1491911889:116968..117959TCONS_00010099-exon-sc0000102-1491911889:116968..117959Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010099-proteinTCONS_00010099-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:116968..124148 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.784885	0.705126	1.27558	1.80729	9.48667	7.42607	5.91507	6.39036	4.62607	5.64382	5.498	4.05767	5.66502	4.82726	8.836	8.1599	7.20933	8.32598	4.8483	4.64162	4.23169	4.3047	4.98408	6.31143	5.87564	8.64956	4.23907	3.37055	13.1467	11.5657
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006620Pro_4_hyd_alph
IPR005123Oxoglu/Fe-dep_dioxygenase
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0031418L-ascorbic acid binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0005506 iron ion binding
molecular_function GO:0031418 L-ascorbic acid binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
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BLAST of TCONS_00010099 vs. Swiss-Prot (Human)
Match: P4HA1 (Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.253e-16
Identity = 52/177 (29.38%), Postives = 84/177 (47.46%), Query Frame = 3 
Query:  684 FQKYLNEAGLNDIKISNRDFIEGTTCINETFSNRLKTKFKWSHSTAFYRDESPFASVFEKRVEDVTSLVSSHGGKFQITSYPKGVGYKTHTDCTLNS-----KELR--DRYATTLVYLQNVKQGGETKFPKLGLSVRPKQGRLLVWNNMNRRGRCDPTSVHHATPVVKGRKFILQRW 1193
            F   +++A +  +K   +  +   T  N    +     ++ S S      E+P  S    R++D+T L  S   + Q+ +Y  G  Y+ H D          KEL   +R AT L Y+ +V  GG T FP++G SV PK+G  + W N+   G  D ++ H A PV+ G K++  +W
Sbjct:  340 FHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKW 516
The following BLAST results are available for this feature:
BLAST of TCONS_00010099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P4HA15.253e-1629.38Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapie... [more]
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