TCONS_00010097 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010097
Unique NameTCONS_00010097
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010097 ID=TCONS_00010097|Name=TCONS_00010097|organism=Clytia hemisphaerica|type=transcript|length=1076bp
GGGAATTATACAATTCTTCAGGTCATGTTTCGTTTTAAGCGAGGCGTTGA
AGTTTCGGTCATCCAAGTATTCTTTCCGATTGTGTCTGTTGTTTGTGTTT
CAATGATCTCCTTATGGTTAAACAAATATTCTACATCTTCACGTGTAGcA
TTATGCGTTACTACCCTCTTAACATTGTGTACTTTGTGGACCAGAGTGAA
TTTCTCCTTACCATTGGTCAGTTATTTCAAAGCATTGGATTGGTATTTCC
TGGTTAGTTTCGTTTTCATTCTGCTGGTGTTGGTTGAATACACCATTGTG
GTTAACGTGGATACTTCAAGAGAAAAGAAGAAAGTCAAAAAtgcaaagaa
agaagaaaagcgaaattctttgaaaaatgcatCACTAAAGGAAACTGCTT
TGGATTCCGCACGTAGTCGTAAAGCCTCAGAAGCACCAGGAGCACCAGTC
AATGTTAAAGAAGTCTTGAAACGTAAAAGGAAAGTCAAATTTGATGATTA
TGAAACGGGGACTTCGAGAATTGACAGGGTGGCACGATTTTTGATTCCAT
GCTCGTATTTCCTCTACAATATttatttttggtttgtttttatgGATGAA
CGACATGCATACGCAGCAGAACACAGCAGACCCATTCATAAATGAATGCA
CGGTTTGTGAGAAAGGTTTAACGTTTTAAATCGTTAGTATGGTACGTTTG
aaactgttttgatttgattaacaACATGAATAAGTTGTTGGcttattttc
atatttactCTGACCATTTTCATGAAGAAAAGACATGGTTACGCTTTGGC
ATTGCGGTTAAATTTGTATGCTTTCATGTGCTAATTGGAAACCTGTTCTA
AGCCGTTAACCCAGTCAtgtttttggtaaaatattaACACTCCGGAGCGC
AGTTGTATATTCAAAAATCTTGTTTAAATATATAGTTCAACGTTTTTGTT
TCTTATAGATAGAACTAAAGCATTATATCAGACAAAAGAGTCCAATGTCA
ATGGTAAGACGAATGTACGAAATATTACTGAGTATTTGAGATAACAACAT
GTTTATTATTAATGTAAACTGTAGCC
Run BLAST on NCBI

transcript from alignment at sc0000102:98496..101662-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010097 ID=TCONS_00010097|Name=TCONS_00010097|organism=Clytia hemisphaerica|type=transcript|length=3167bp|location=Sequence derived from alignment at sc0000102:98496..101662- (Clytia hemisphaerica)
GGGAATTATACAATTCTTCAGGTCATGTTTCGTTTTAAGCGAGGCGTTGA
AGTTTCGGTCATCCAAGTATTCTTTCCGATTGTGTCTGTTGTTTGTGTTT
CAATGATCTCCTTATGGTTAAACAAATATTCTACATCTTCACGTGTAGGT
GAGTAATCATAGAGACAAAAAGTTGGTTAGGGTACTGTCGTTTTCACTTA
AATTCATTGAAATCCTTCCGTTATTGACAAGGCTGAATAGTTTGGCTCCC
TCTATTTCTTAGTCCAAATCGAAAAGAGCAAGAGAGAATTTTAAAATCCT
GTTCCGAAGATAATATAACTGAAGGGACGATAAAACTTCTTCCAGTTAAG
GAGACATTCGAGTTCTAAAGGTTCCAGTTATGAGACTTCGCTATGTATTT
ATTCATCTTTTTTTTCAACATTATGTGTTACTACTTTTTCAACATTGTGT
ACATTGTGGACCAGACCGAATTTCTCTTTGTCATTATAACTCTACGGGCT
TTTTAGGGCTTGACTATGCGTTATAAGATTATTTATTTTTCTTTCCTTTT
TTCAGCATTATGCGTTACTACCCTCTTAACATTGTGTACTTTGTGGACCA
GAGTGAATTTCTCCTTACCATTGGTCAGTTATTTCAAAGCATTGGATTGG
TATTTCCTGGTTAGTTTCGTTTTCATTCTGCTGGTGTTGGTTGAATACAC
CATTGTGGTTAACGTGGATACTTCAAGAGAAAAGAAGAAAGTCAAAAATG
CAAAGAAAGAAGAAAAGGTTAGTGCAGCAATTTTTTCCAGTAACCTTTTA
AAAGTGTATTTTGATTTTCACTTTATGAAGCTACAGTGAAACCTCTAATT
AACGGACACTCTAAAAGGCAGACACCTCTGATTAGCGGACAATTTCATTT
TCCCCGGCCGTTTCCTAGTCAAATCATCATAAAAAAGTTTCTAAAAGGCG
GACACTCAATTATCGGACCCTCTGATTAGCGGACAATTTTTTTCGCATGA
AATGGCCAAAACCCCTATTTTAGCTCTCCAATTAGCGGACATTGAATATC
AAACGGGTCACAGACGTCCAAAATTGAAAAAAAAATTTTAGATATTTTTA
TTTCGAGCACTTATTAGTCTTATTATTCAAATTATTTATACAAATTTCCA
GTTTTCCCTTGACCCATTCAACGAATTTAGGTGGGCCAAAGAAATCATAA
ATCACTGGTACTTCAAGTCCGTACTCACCACCTCGATTTAACCTCTTGCC
AGTCACTCGAGCTCTTCTATGGCCTAGTGTCTGCAGATAAGTACTTTAGA
CCCCAATTTTATATTTTCGACACCCTGGGATGGCCTAATTTAAAAATTGG
AGCTCCGAGATCAAAAGTTTCTAAAAGGCGGACACTTCTAATTAGCGGAC
ACTAACCCCTTTCCCCGATGGTGTCCGCTAATTAGAGGTTCCACTGTATA
TAAAGATGATTTGTTACGACCCATCATGGAACTTGATCTTATACGGGTAC
AAATTTCTAACCGTGCCACTATTTCAAGAAAGTTTGGCGGAACTCTGGCA
TTTAACCATGCTAATAAACTAGTATGTTAATTAATCATGTAAAAGGGTGG
GAACTTAAGGGCGGCGGGTGTTTGCTAAAATGGGAGCTCCGTAGGAGAAC
GAGCAAAAGTTGGTGAGAGGTCAGCCCCTCCTTCCCCGCCCTCTTCCTAC
GCTCACTTTTCCCGCGTGATATCGTTCCAGCCCGAATGGTGTGCTGGTCT
ATAGTCTAGGATTTAGTTGATGGATTCTAAAAAAACTCCGATATAAAGCC
GATGAGGACTCATTTTTGTGGTCGATAAATTGATACCCCTTTCTAGACGT
GTTTATGGACTTTTTCAAAAGCAAATTTTGACTTCAAAAGCGTATAGCTT
GAGAATCACTAAGCCAATTTTCATAAGTTATATACCAAATTTTAAGTTTG
CTTTTCCTCTTTACAATGACAAAATAATTTATCAAAAGTTTGCATTATTT
CGGACACAGTTAGCAATCAAACCTTTACACTTCTTTCTGGGTCACCCGGT
GTAAATTAAAAGTAAAGATTTATCATATATACACCCCCTTCTCACAGACC
CGGTCGGATCTTTTCAGCCAGTGGAGAAAAGAATAACGGACTGAAATTCG
ATGAGGATCGATATTCCCACATTTTTATGGCTGGAGATTTCAATTCTTTT
GTTTTAAGGTCAGAAAATTCAGTGGGAATGAGAAAAATAGCATAATACTT
TGCAATGAGGATTGGTTTAATTGATTATTTTCAGTGGGGAAAAAATTAGA
CGATCATTTTCCGCCGGGGACGATATTTCGGCGAATTTTTCCAGTGTGAA
GGGATTCCAGTGGTTCTGTGAAAAGGAGGTGTATATATTGAAAACAAGTA
CAAAATAAACGTATGACCATACATACATAAACCATATTCTTCATTTTCAA
GCGAAATTCTTTGAAAAATGCATCACTAAAGGAAACTGCTTTGGATTCCG
CACGTAGTCGTAAAGCCTCAGAAGCACCAGGAGCACCAGTCAATGTTAAA
GAAGTCTTGAAACGTAAAAGGAAAGTCAAATTTGATGATTATGAAACGGG
GACTTCGAGAATTGACAGGGTGGCACGATTTTTGATTCCATGCTCGTATT
TCCTCTACAATATTTATTTTTGGTTTGTTTTTATGGATGAACGACATGCA
TACGCAGCAGAACACAGCAGACCCATTCATAAATGAATGCACGGTTTGTG
AGAAAGGTTTAACGTTTTAAATCGTTAGTATGGTACGTTTGAAACTGTTT
TGATTTGATTAACAACATGAATAAGTTGTTGGCTTATTTTCATATTTACT
CTGACCATTTTCATGAAGAAAAGACATGGTTACGCTTTGGCATTGCGGTT
AAATTTGTATGCTTTCATGTGCTAATTGGAAACCTGTTCTAAGCCGTTAA
CCCAGTCATGTTTTTGGTAAAATATTAACACTCCGGAGCGCAGTTGTATA
TTCAAAAATCTTGTTTAAATATATAGTTCAACGTTTTTGTTTCTTATAGA
TAGAACTAAAGCATTATATCAGACAAAAGAGTCCAATGTCAATGGTAAGA
CGAATGTACGAAATATTACTGAGTATTTGAGATAACAACATGTTTATTAT
TAATGTAAACTGTAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005660XLOC_005660Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010097-exon-sc0000102-1575043694:101515..101662TCONS_00010097-exon-sc0000102-1575043694:101515..101662Clytia hemisphaericaexon
TCONS_00010097-exon-sc0000102-1575043694:100896..101107TCONS_00010097-exon-sc0000102-1575043694:100896..101107Clytia hemisphaericaexon
TCONS_00010097-exon-sc0000102-1575043694:98496..99211TCONS_00010097-exon-sc0000102-1575043694:98496..99211Clytia hemisphaericaexon
TCONS_00010097-exon-sc0000102-1510915933:101515..101662TCONS_00010097-exon-sc0000102-1510915933:101515..101662Clytia hemisphaericaexon
TCONS_00010097-exon-sc0000102-1510915933:100896..101107TCONS_00010097-exon-sc0000102-1510915933:100896..101107Clytia hemisphaericaexon
TCONS_00010097-exon-sc0000102-1510915933:98496..99211TCONS_00010097-exon-sc0000102-1510915933:98496..99211Clytia hemisphaericaexon
TCONS_00010097-exon-sc0000102-1491911889:101515..101662TCONS_00010097-exon-sc0000102-1491911889:101515..101662Clytia hemisphaericaexon
TCONS_00010097-exon-sc0000102-1491911889:100896..101107TCONS_00010097-exon-sc0000102-1491911889:100896..101107Clytia hemisphaericaexon
TCONS_00010097-exon-sc0000102-1491911889:98496..99211TCONS_00010097-exon-sc0000102-1491911889:98496..99211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:98496..101662 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.45301	1.29884	1.01473	0.536516	0	0.130819	0	0	0.0585021	0	0.313539	0.0806416	0	0.227166	0.0899773	0.0737855	0.272693	0.0931671	0.128715	0	1.22216	1.17492	0.555332	0.631097	0.585246	1.49594	0.133277	0.14603	0	0.0722807
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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