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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010094 ID=TCONS_00010094|Name=TCONS_00010094|organism=Clytia hemisphaerica|type=transcript|length=2766bpRun BLAST on NCBI protein sequence of TCONS_00010094-protein >TCONS_00010094-protein ID=TCONS_00010094-protein|Name=TCONS_00010094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp MLFYFVVILFANIFDASSKRSDGQIRKEWNSLLKGYNRHIRPNYTGSATNRun BLAST on NCBI transcript from alignment at sc0000102:87604..114093- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010094 ID=TCONS_00010094|Name=TCONS_00010094|organism=Clytia hemisphaerica|type=transcript|length=26490bp|location=Sequence derived from alignment at sc0000102:87604..114093- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000102:87604..114093- >TCONS_00010094 ID=TCONS_00010094|Name=TCONS_00010094|organism=Clytia hemisphaerica|type=CDS|length=11556bp|location=Sequence derived from alignment at sc0000102:87604..114093- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010094 vs. Swiss-Prot (Human)
Match: GBRB3 (Gamma-aminobutyric acid receptor subunit beta-3 OS=Homo sapiens GN=GABRB3 PE=1 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 3.305e-41 Identity = 107/313 (34.19%), Postives = 174/313 (55.59%), Query Frame = 1
Query: 1408 ILFANIFDASSKRSDGQ---IRKEWNSLLKGYNRHIRPNYTGSATNVHLTIKIQSFREINERKMSYGIDIWMSQKWEDYRLKHNISKVITPLLGLGRPSNLIWVPDTVFINEINSKQHLVTVRNNKVDINSDGTVHLISRVTVVASCRMNFRFYPLDTQFCYLFIESFAYPDTYVDYNWRVG----VIVEKYDLSQYTLEKVETFKNISKYESGNYTILQVMFRFKRGVEVSVIQVFFPIVSVVCVSMISLWLNKYSTSSRVAXXXXXXXXXXXXXXRVNFSLPLVSYFKALDWYXXXXXXXXXXXXXEYTIV 2325
+L A + A S G +++ + LLKGY+ +RP++ G V + I I S ++E M Y + ++ Q W D RL + S + L R ++ +WVPDT F+N+ S H VTV+N + ++ DGTV R+T A+C M+ R YPLD Q C L IES+ Y +++ WR G VE+ +L Q+++ + + +G Y L + FR KR + ++Q + P + + +S +S W+N ++++RVAL +TT+LT+ T+ T + +LP + Y KA+D Y + FVF+ L L+EY V
Sbjct: 17 VLVAVVCCAQSVNDPGNMSFVKETVDKLLKGYDIRLRPDFGGPPVCVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAY--SGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSRNVVFATGAYPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFV 327 The following BLAST results are available for this feature:
BLAST of TCONS_00010094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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