TCONS_00010092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010092
Unique NameTCONS_00010092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010092 ID=TCONS_00010092|Name=TCONS_00010092|organism=Clytia hemisphaerica|type=transcript|length=424bp
TGATGGGAAAAGGTGTGATAgattTTTTACAATATTAAAATAATGGCAAG
ATTACAAAAGGGGAAACTTCTTGCTGTCATTGGAGATCAGGATACTTGCA
CTGGGTTTCTCCTTGGAGGAGTTGGAGAAGTTAATGCAAAGAGACAGAAA
AACTTCTTTGTTGTCAATAAAGATACAACCATTCATGATATAGAAGAGGC
TTTCAACTCTTTTGTCAATAGACAAGATATTGCCATTGTCTTGATAACAC
AAAAGATTGCTGAGGAAATTCGCCATGTGATTGACAATCATACCTTACCT
ATTCCATCAGTTTTGGAAATTCCCTCCAAGGATTTCCCTTATGATTCTTC
AAAGGATTCTATTCTGAAAAGAGCAAAGGGAATGTTCAGTGCAGAAGACT
TCAGATAAAAGTAGCAATGAACTT
Run BLAST on NCBI

protein sequence of TCONS_00010092-protein

>TCONS_00010092-protein ID=TCONS_00010092-protein|Name=TCONS_00010092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MARLQKGKLLAVIGDQDTCTGFLLGGVGEVNAKRQKNFFVVNKDTTIHDI
EEAFNSFVNRQDIAIVLITQKIAEEIRHVIDNHTLPIPSVLEIPSKDFPY
DSSKDSILKRAKGMFSAEDFR
Run BLAST on NCBI

transcript from alignment at sc0000102:64325..75083-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010092 ID=TCONS_00010092|Name=TCONS_00010092|organism=Clytia hemisphaerica|type=transcript|length=10759bp|location=Sequence derived from alignment at sc0000102:64325..75083- (Clytia hemisphaerica)
TGATGGGAAAAGGTGTGATAGATTGTAAAGAAAAAACTTCTGCCCAACTT
CCAATCCATTTTTGTTTCTTTTTCACCAATCGGACATCAACCCTGCTACA
TTTAATTTTCCTTTGAAATTTCGTTTTTTATTTCTTTCCCAAAATTTTAA
AACCTGAAACTGTTTTGCTTTGGTTTGAAAGTTTTTCAAAGGGATGGTTG
TTTTCTGTTCATCTTAAGCCCGCCAGTTCCTACCCTGAGTATCAGAGGTT
GAGAATATTTCAACCTCTTGGAAACAAAAAAATACCGATACCGATTTTTT
GGGTATTTTTCCTCCTTTGACTAGTTCTTCACCAAATTTGATTTTTCATG
TATGAATTCCGAAAAAGGGGGATAAAAACTTCCCGAAATACCGTACGCCC
CCCTGCCAACCTTCTCGAATAAATACACTGGATGAGGTTGATGCCGGTAA
TCCTTGGAAAAATAGCGGAAGAATTCCGGAAAAGTGACAACAATCCGGAA
TGGTAATTTGCTTGATCAGCAGAAAAATTTCAAGATGGCTTCCGGAAAGT
TGGAAAAAATGTCTCGGTTTTTTTCATTTGATTATAATATCCAACGTATT
CAATTAAACTAAAACTCAATGCACTCAGTGACTGGCATCTAATTACTTCA
ATAAATCTTAAATGATCACAATCTTGCTTGCTAAGTATATTATCTTTGTA
CTTCCTAGCCTGGAGATCCTAACCTGACAGAGATCAGATTGTGGTTGTTT
TCTGGCCCACCACGCTGAATCATACAATCTGACAAATATGCAATCTCGAA
ATCGTAAGGACTGCGTTTGTCTAAAAGGACTGGGGATGACAACAAAGTTG
CGTGATTGTGTTTATGAATAGGGCGCCGTATCAGTTTCTGACTTTTTATG
GCGCACAACAAGATTCTTGTTGTAGAATTTTCCGCGGGAGGATTATTATT
TCCTCAGATGTATAATTTTCAAGTGTCTTCAGAGGTTTACCGTGCACGTA
AAAAAATTATGAACAGCTGTTATCAGGTTAGGAGATCCATGCTATGATTT
CTTATTCTATCTATATACTGATGGCGAAATATATAGCATGGTATGATGGG
CTGACAGTTTGAATTTCACATATCCTAATAACGGTTAAAAACACAGCAAA
TCAAATCCTGTTATTGTTTCACTGAGTCACATTTTCTTAAAGAAAGCGCA
AGTTCAGAAATTTGGTTTTTAGTTTAGTAAGTGAGGACAGCGCTAAATTC
AAATTTCCTACTGTAATTTTTTTGAGGCCAAAATCGGACTCACAGCTCTG
ACCCGTCAAGTATTCATCAGATTTAGAAAAAATACGCAGACGGGTTCACT
GTCTGTGTACTTCCATGAATTAGGCATTGATGAATTAGTCAATCGAACAA
ATCGAACGCCAAATCAATCGGACGCAATTGAACGCAATCGAATAATTGAA
ATTTGATTGTCGAACGCAATCGAATCGCAATCGAATATTACCCAGGATTT
ACTGTTCGATTTCTTCGATTACGTTCGATTGTATTCGATTACGTTCGATT
GTATTCGATTGTATTAGATTTTATTCGCTTTGGTATGGTACTTTTAAAGC
ACTCGGCCGCCCACGCTAAAAAGCTCTAACAGAGTGATGCAATTTGATTT
AATCGCAATCAAACTCATCGAACATAATCGTAATCGAACATTAATCCAAT
CCAATTATTCGATCGCATTCGATAACGTTCGATTGGTTCGATTGCGATTT
TTTTCTCGAAGTTTTGTTCGATTGACACCGTCTGGTGATGAGGCATTTAA
AATTTTTCATGGTTCAGAAATGGCTTGATACGTGAATTTCTTAAGTTATT
TCTATAGAGAATTAAGAGGTCGGATCACTTTGACCTGATAAATGAACTTT
CTTAATGTGACCAGATGTGACACATTAAAGGTGCAAATGCTACTGTGAAT
TCAGGTAACTTGCATCAGTCAGTGGAGGGAAACTTGCATAGCCATCAATC
AAATGACCAGTTGAGTTGGTATTTTTAAAAGATAAAAACCGCAATTTCTG
TATTGCTCTTTTCTGCAATCAGTGCCAAAAACGACAATTTTTTCAGTGAT
GAAATGTGGAGTCAGCAAAATGTGTTGTCCTTACAAGTTGACACAACACA
TATGTGTACATGTACATTGTACGCACCAGTTTGCAGAGTATGGTGGAAAT
CATTGAGATCTTGAGGGCACAGTGTGTATCAGTTTCAACAGTGCGCCACA
AACCGCGATATTTCGAGAACACGGAAGCGCGTCAAAACACCAGCTTTTTT
AGAGTTTTGTCTCGTTTATCCAAACGCTGCAATCCCGCGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGTTGAAGCCGACTGTGGACTGACCGAAATTGCAATTTACATAAATTAT
TGTGGAAGTGAACGCTTTAGAGGAATGTTTGGGAAATCAAAAAGACCACT
TTCGTGAGAATGTTGAATTTTGTTTATATGGCGGTTTGTGACGGACTGTT
CAAGGGCAGGGGCAGATTTTTGCTAATTTTCTGGTCTCGGGGGCAAAATC
ACTGAAAATTGGCCAATTTTGTTACTTTTTCTGTTTTTTTAGCAGCCTTT
CTGGGTAGGTATATACACAGAGTTTAAGGGCAGGAATTCAATGGTATAAT
TTTTCCTTGGGGGCAGCCATGACATGCTCTGAAAACTGTACATTGACAAG
TAATCCCTGAGAGAAGTTTTTATAGAAATCTGCTACAAAAACGAAAGTGG
TCTCTTCTACTGATTGCTTCCCGGCGCTCATTCACAGCGGTCTATCAATT
TTCCACCAAAGAGGTTGCCGCATTTCAAACGGTCCTTCTTTTTGGTACCT
GTGGCCTTTCAGTGCCTTGCACGACGGGCGGCTGTAAAATCCCACCCTTC
ATATATTTGTTTAAATCTGTGATCCATGGCTTAGGTTTTTTCTCATCTTC
AATTTACTGAAGAAAGCGGGAATTAGATGCGAGAGTTAGATTGTCAACAA
AGTGACGTAAAAAATCATTGAATAAAAGAAGAACTTCAAATCTTGAATAT
TTTCATTTTGAAGAATAGGTGCAAAAAAGTGAAACAGAAAAGTTTCATTT
TTCATTGCATTAATTGATCGAAATAGGGGATTTGGAAAATTTTCTATGTT
TAGTTTTTTGCACAAACCCCTGTAACTATGGGCAAGTACCTCGTTACTAA
GATGTTGGCTTGAAATCAAAAATAAAACCACTCAAAACGAAAGTAAAATC
AGCCCATACTCGAACAGTTACATCAATAAGGCTACTCCATCACTCCATCG
CAGAGGCTAATCAATTTTAATGACTTTTTTACTAACGACCAAGTTAAAAA
ATTTTACTAACGACCAAGTTAAAAAAATTTAATTTTTTTATATTTGAGTA
TTAAAAAGGAATGCATTCAAATAATAAAGGTTTAAAATTTTTCTCTGGGC
AAGTTAGTAAAATATCTCAAATAGGCTCTGTGATGGAGTGCAAGGCTGAA
AGCCACATGAATATGGTTCATCCTATAAAAGGAAGTTCATTCTATGGTGG
CCTATCTTGAAGTGAAGGTGGTTGAACAAAATGTTTTTGGCATATTGATG
TAACTGTCGAAATCCCATAATCTTCATATATGAGTTTAAGTCTATACTGT
TTCGTTTGAGGGCTATGCATGTTAGCCTCCACTGATGGCTGATGCAAGTT
TTACCCAATCTCTCGGTAAGGAATAGACTTGTGTGACTTCATTTTCACCC
ACAATACACCGTTTAGTAGTGTCAACTGCACACGCGTCCAAACAATTTTC
CGTACCGCATGAAACTTCACTCTCCCCGTAAAAAAACGGTTGTTAAAATT
CCGGTTCTTGTAAGGAAACCCAGCAGAGAAACGGTAGGTAAAGAACTCCT
TTTAATCATTACTTCTTTTCCTCTTGATGAATTTTTATGTAATTTTTCAG
GACAGATCCATAAAATTATCATTGATATCATGTTCAAATATCTTTCTCTT
TAAAGGAAAGAAAAAAATTGACAATGTTTACATTCCTCTAACCTTCCACA
GTACTAAAGTGCGCCATTTTTACCTACCGACTTTACGACTGACGATTCTG
CCGGTGCACCCGACAGTCAGGTGCTGTTGTCAGGTGTTCGAAGTTAGAAA
TTTTAACACCCGACAGTCGGGTGCACTTTGTCAAGTGCTATATCTTGGGT
GCTCTTAACAGCACCTGACATTTAATGGGAGGGTGGCGATTTCTCGAGGG
CGGCGATTTCTCGAGGGCGGAAAAACAGGTTCTTTTTGCTACCGCCCATG
TCGCATATTTTTTGGCTTCAATCCTTTTTGCTTGGAAAAAAGATTATGTC
ATGAAAGTTTAGTGCGCGCTCAAAAGAAAGTTGAACACATTTCAACTTTT
TTCAACCGGTACGTCAAATCACGCCAATGGAGTTGCTTCAAATTCATTTT
TCTTTTGATCAATACTGTAGCGTGGAAAAGACCTATAGGATACATGGGGC
GAGGGTATGCCCAAACTCGTTCCCAGAGCCACTTGCATTTGCACTTTTAA
CTTTACTGATGGAAGTGATATAATTGTTTCATGGATAAGAGAGCTCTATA
GGAATTATAAATCGTCTGCCAAATCCAACCCAACTTCTACAAAACCCCAG
ATAGTTCCGATCACTGATCCGATTTACGCCAGCCTTTTTACGCCAGCAGT
GACAAAAAATTGCGTCTATAAGGGCCAACAAGGCTTTTCTTAAAGGAGAT
CTTTAGAACGTTAGAACGGCAAAAATTTTGCTACATTTTTTTTGGAAATT
GTGGAAACTTTATATTGTGGGGATTAAAATGAGCTATATTATGTTGAAAA
ATTTTAACTCAATAGGAAATTATATCCCTTTAAAGATTTAAGCGTGTGAC
GTCATTGCTGAACAACTTGTTTGTTAAACCAGATTTTCTCTCTTTTTCTC
TAAACTTTTAGTGAGTTTTATAAAGAAAAATTTCTTGATAAAATCATTTA
GCACATTCATTTAGACTTCTAAATTCTGCTAAATTCAGAGCAAAATGTCG
TCGAGTGAATCTTCAAGTGAAGAAAATGATTTCTCAGACATTTTTAACGA
TTCTACTGATGAAGAAACGGAGTTAGACACATCAGAATCAGAGGCATTTT
TTTGCTATAAACATCTTCTTTCCATAATTTTTGTCTACAAACAGTTTCTC
TATTGAAATGAAAGTTCAGCGCTGACGTCACGAAACCCTCTTACTTTCAA
ATAAAGAGATATTTTAAACAATGATAATTCAATCAATATGAAAGATTTTG
CACTCGTTCTTTTTGCAATGTTTTTTATTAAATTAGGCCTGTACTCTGTC
AAAAAATAAGGATAAAGAAATTTTTGCCGTTAGATCTGCTTTAAGTTCTA
TTGAATAAGATCTTCTCAAATTTGAACTTCAGAAAACAAATTGAAATGGC
AGAAACTTCATTTCTTCTGTAAAATAATATTCAAATACTATATTTATATT
GAAGAAAAAAATGACCCACTAGAAAAATTTTTTATTCATCCAATTTTCTA
CAAATAAAATTTTATCCATTTTTACATCTAATGTAGTAGCTTTCAACTTT
AACCCATTGTATTTGCAACTGGTCACAGGACAGCTACAAATATGACCACA
TGCAAGGATATCCCTGATTGCCAGCCCATTTCTGAGAGGTTTGAATTGTG
GGAAAAGTGTATTCTTCAAAATATAATAGTTTGATTATAGTTTGATTTTA
AAGAAATCAAACTTTATTAAATCAAACTTTTTGTCTCAAAAAGAGACTTA
TAGTTCAATTCTTTGCAAGTGGATACAATTAAAAGTTGACTTTCTGAGTT
TTGATCAATCTTTGAAAAAAATTACGGAATTGGCGTCAAGATTTATTTTT
TGGACCTACCCCGGTGGGCTGTAGGTCCTATAAATTAACCTTTGTCCGTC
TGTCCGTCCGTCCGTTAGTTACCAGCTTTTCTCGAGATTGGCTCATTAGT
TTTTTCTGATTTTTTGCACAATGATGCAAAATGTCAATAACTAAATTGTG
ACGGAGCCCGATTTTCGAAAAAAATTCAATTCCGGCCGAAAATGCCGGAA
ATATGCCGGAAAAACTGTTTTTTCGGCATTTTCTCGAGATTTCATCATTA
GTTTTTTCTGATTTTTTGCTCAAAGATGCGTATTAAAAATCCCCAAAACG
GCCGAAAATGCCGGAAATATGCCGGAAATTGCTGTTTTTCTGGATTTTCA
TTGGACTTTTTCCATATAATTGGTTGTCTTTTCATTCAAAAACATTATTA
ATAGCAATGCCCACCATCAAGCATGTTTCAATTTTAAATAAAATTGATTT
TTGAAGCCGGAACTATTTTAAAAGTCGCCGGAACAACCTATTTTCGCCGG
AAAGACCTATTTTCGCCGGAAAGACAGTATTTCTTGAATTTCTCGAGCTG
TACTTTATATTTTTTTAAGAAATTTTGCACACTGATACAATGCCGAAAAT
GCCGGAAATATGTCGGAAAAATTGGTTTTCTGATATTTTCTCGAATTTTC
ATTTTTAGTTTTTTCTGATTTTTTGCAGAAAGATGCGTATTCGCAATGCT
CAAAACATGGCCGAGTTCGATTTTTGAGAAAAAATTTTTTCCTGTTGAAA
ATGCCGGAAATCGCTGTTAAGTTTACTTATATTTCTATGCTTTTCACACA
AAAACATTATTCATAACAATGCTCACCATCAAGCATGATTTAATTGTCAA
TAAAACTGATTTTTGCGACCAGAACTTCCTATTTATTATTTCCCTACAAC
CCTTCCCTCTCACCCCATCAACAATCAATGATGAATTTATTGTGTTGTGT
ATTTTCGATAAACGCTATATTTTCTGACTGATTTTTTCATTTTTCTTTTC
GCATTGCTATCTAACTTTAATCATCAGGTAGGTCCATTCAGCATATTGCT
TGTTTCTACTGAAAATAGAAAACATTTATTCTATAAGCTAAACTAATTGG
TGTATTTGTTTGATTGTTTGAAAGAAGATACCTTTCATGAAACACAGAGG
ATTTTCGAAAAAAATTGATGTGTCATTGGATTAGGGGTCACCTAAAATCT
GGTGCCAAGCCATGCATTATATACTCTTAAGATATCCCACTTGTATTAGA
TCTCACTATACTAAGAGTTAATTTTGGTGTTTCTTTTGTTTTGAAAAACA
AGACCTCTGATTGGGTTGACTCTAGCTCTGTGTTGTATCAGGTGTATCTT
GGGTGATTCAGCTAGTATGCAAACTAAGAGTGGATACGTTGATAAAATTT
ATGATTTCATGTCTTTTTTTTCAAAAAAAAAGTACTCAAAAGTTCCAGAA
ATCATAGGCTCGTAAAAAGGGTACACAAATACCCTTATTAAGAGGTGCAT
GAAAATTAAAATCCTTTTAAATAAAGGGATGATAATAATAAAAGGAGTGC
AAAAATTACTGGGATTAAGGTATCTAATGTAGTCTCTATTATAAATTGCA
GTTTTACAATATTAAAATAATGGCAAGATTACAAAAGGGGAAACTTCTTG
CTGTCATTGGAGATCAGGTAAGAATTCTCGTCCTTTCAATTTTTTCATAA
TGATATAGTCTTTAAATATTCTGAACAAATGGAAAATAGGACACTCTTTA
GGGTACCTAAGGCTCTCTAAAATTGTTGCATGAGATGTCTGTTGCCTTTT
TTTAAAGGTTTTAGGTTTTTTGGAAATGTTTCAATATGGATCATTTCTAA
TTGGAACTGATTGGAATGGTTTAATTGTGAAAAACTACTACCAAGTGCAC
AACTAAAAATTTAAGCACTTTCAGTTAAAAAAAAGAATGATGCAATAATA
ATGTGAACTATGATATGTTAAAAGATTAGTTATTTATTTTTCATTTTTAT
TTTTATTTTGCATAAAGGTGAAATAAATTAAACTCAGTGTTAAACCTTGT
ATTTGTGCATTTAGTTCAACCAAGTGACTCTTTTTGATTATATTTCTATG
TTTCTAAAGGATACTTGCACTGGGTTTCTCCTTGGAGGAGTTGGAGAAGT
TAATGCAAAGAGACAGAAAAACTTCTTTGTTGTCAATAAAGGTATTTTAC
TTCAGTTTTGAGCAAGATTGGCTGGATGAAGATTGTTCTAACTCATGTAT
AAGTCTTTATGCAAAATGATTTTGAAAGTTCCCTTGCAGCTAGCAGTAAC
AAATCTGTATGACTTGCGGTCCCATCCTCCTTCGTGTTAATTGCTCTAAT
GCACATTAATTAACTGCAATATAAAAAAAGGTAACAACTTTCACGGTTTT
CCAATCATTTCGATGTGAACCGTGGGATCGAACTCAAATTTCACAAATTT
CTAGTTGAAATAATTATGACGTGTGCGACGCGGAGCGCTATTAACTATTA
ACATATGCGTCGTGTTCTAATCTTATCATGGAAGTAAAGGGATTAATTTT
CAAGTGCACTAATCTTAGTAGGAAGAGTCTAAAATTTACTGAGTGATGCA
ATTTTTTACCCGTAATGATAACTATTCTTGCCGAATGACAGGGTTGGTTG
GCTCATATTCTGCCTGAAATAGTTAATGGTTTAGACATGAAGTTAATGGC
TCAGACAAATACTAGGCATAATTCTAGAAAATTATGAAAATTATAATTTG
GAGTGGCATTTTAATAAATGTTTTGGGGAGTGCTAATTTTGCGCCAAAAA
ATGTCCTCTCTAAAACTAGTTCCGTTTTGGTAATTTTTATTGGAAAATGC
TTTTAATTTTTAAAGCACTAAACAAAAAATCTTGACTTTAGAAGTGGTAG
GGTTGTAAAAAGAAAATTCTTTATAGAACTGTCAAGGTTGTTAACTTTTT
GATTTTATTCTGATTGACTTATAGATACAACCATTCATGATATAGAAGAG
GCTTTCAACTCTTTTGTCAATAGACAAGATATTGCCATTGTCTTGATAAC
ACAAAAGGTAAGGGTAGCCAGTTTTGTTGTCATAATCATAATCATAAAAG
ATTTTGCCTGTAAGACTAAGCAAGTTTGTTCTTTTTGAGGAAGTAAAGTT
ATGAGTTAACACTTCTTAAGAGTAATCAGATATTTTTTCTGTAAATTATT
CTTATTATTTGTTAGATTGCTGAGGAAATTCGCCATGTGATTGACAATCA
TACCTTACCTATTCCATCAGTTTTGGAAATTCCCTCCAAGGATTTCCCTT
ATGATTCTTCAAAGGATTCTATTCTGAAAAGAGCAAAGGTAAATTTCTCA
TTTATCGTAATCAGTAGTGATTTCATAAGAATAACAACTTACCTTTGGAT
AGACGCAGGAACTCTAAAATTTTAAAGTCACAGGAATTCCTTTCTATTGG
AGAGTCTTCCATAGTTTTGCATAGATCAAAATGATTCTGAAATTGCCTTT
TGACTGGTCTTTGTGGTTTGTTGTTATGGTCAGAAAATCTATTGCCATCT
TTGAAAAGAAAAAATTTAAGTAGAAGTTCGAAACTCGTGTATTATTCTTA
AAATGAAAATTTGATAAGTTTCCAATGCAAGAACTTAAGGTTTCTTCTAA
AGGGAACAAAAATGTGCAACTGTAAAAGTTGAAAGTGCATTGGATGTAAA
TTTTAGCAAAGTCAGGAAAAAAACAATATAACTCTCCAAAAGAGAAAAAC
TTTAGCTGAAAAAGGATTGAGTAAATGCACTTGTGACAATTTTTTGCTAA
AAAAGGGTTTGGTAAATGCACTTGTCTTGTGACCAAATTTTGCTGTACTC
TAAAGGTGCTATTCTAAAATTTGTTTTCTTTACATGCTGTTAGACTATAT
AACTCTGTGCACTCATCAATGTTTAAACTTGTTTGTTATTTAATCTTTTT
TTTCTAATTTCAGGGAATGTTCAGTGCAGAAGACTTCAGATAAAAGTAGC
AATGAACTT

Coding sequence (CDS) from alignment at sc0000102:64325..75083-

>TCONS_00010092 ID=TCONS_00010092|Name=TCONS_00010092|organism=Clytia hemisphaerica|type=CDS|length=1830bp|location=Sequence derived from alignment at sc0000102:64325..75083- (Clytia hemisphaerica)
GGAATGTTCAGTGCAGAAGACTTCAGATAAATTGCTGAGGAAATTCGCCA
TGTGATTGACAATCATACCTTACCTATTCCATCAGTTTTGGAAATTCCCT
CCAAGGATTTCCCTTATGATTCTTCAAAGGATTCTATTCTGAAAAGAGCA
AAGATACAACCATTCATGATATAGAAGAGGCTTTCAACTCTTTTGTCAAT
AGACAAGATATTGCCATTGTCTTGATAACACAAAAGGATACTTGCACTGG
GTTTCTCCTTGGAGGAGTTGGAGAAGTTAATGCAAAGAGACAGAAAAACT
TCTTTGTTGTCAATAAAGATGGCAAGATTACAAAAGGGGAAACTTCTTGC
TGTCATTGGAGATCAGGGAATGTTCAGTGCAGAAGACTTCAGATAAATTG
CTGAGGAAATTCGCCATGTGATTGACAATCATACCTTACCTATTCCATCA
GTTTTGGAAATTCCCTCCAAGGATTTCCCTTATGATTCTTCAAAGGATTC
TATTCTGAAAAGAGCAAAGATACAACCATTCATGATATAGAAGAGGCTTT
CAACTCTTTTGTCAATAGACAAGATATTGCCATTGTCTTGATAACACAAA
AGGATACTTGCACTGGGTTTCTCCTTGGAGGAGTTGGAGAAGTTAATGCA
AAGAGACAGAAAAACTTCTTTGTTGTCAATAAAGATGGCAAGATTACAAA
AGGGGAAACTTCTTGCTGTCATTGGAGATCAGGGAATGTTCAGTGCAGAA
GACTTCAGATAAATTGCTGAGGAAATTCGCCATGTGATTGACAATCATAC
CTTACCTATTCCATCAGTTTTGGAAATTCCCTCCAAGGATTTCCCTTATG
ATTCTTCAAAGGATTCTATTCTGAAAAGAGCAAAGATACAACCATTCATG
ATATAGAAGAGGCTTTCAACTCTTTTGTCAATAGACAAGATATTGCCATT
GTCTTGATAACACAAAAGGATACTTGCACTGGGTTTCTCCTTGGAGGAGT
TGGAGAAGTTAATGCAAAGAGACAGAAAAACTTCTTTGTTGTCAATAAAG
ATGGCAAGATTACAAAAGGGGAAACTTCTTGCTGTCATTGGAGATCAGGG
AATGTTCAGTGCAGAAGACTTCAGATAAATTGCTGAGGAAATTCGCCATG
TGATTGACAATCATACCTTACCTATTCCATCAGTTTTGGAAATTCCCTCC
AAGGATTTCCCTTATGATTCTTCAAAGGATTCTATTCTGAAAAGAGCAAA
GATACAACCATTCATGATATAGAAGAGGCTTTCAACTCTTTTGTCAATAG
ACAAGATATTGCCATTGTCTTGATAACACAAAAGGATACTTGCACTGGGT
TTCTCCTTGGAGGAGTTGGAGAAGTTAATGCAAAGAGACAGAAAAACTTC
TTTGTTGTCAATAAAGATGGCAAGATTACAAAAGGGGAAACTTCTTGCTG
TCATTGGAGATCAGGGAATGTTCAGTGCAGAAGACTTCAGATAAATTGCT
GAGGAAATTCGCCATGTGATTGACAATCATACCTTACCTATTCCATCAGT
TTTGGAAATTCCCTCCAAGGATTTCCCTTATGATTCTTCAAAGGATTCTA
TTCTGAAAAGAGCAAAGATACAACCATTCATGATATAGAAGAGGCTTTCA
ACTCTTTTGTCAATAGACAAGATATTGCCATTGTCTTGATAACACAAAAG
GATACTTGCACTGGGTTTCTCCTTGGAGGAGTTGGAGAAGTTAATGCAAA
GAGACAGAAAAACTTCTTTGTTGTCAATAAAGATGGCAAGATTACAAAAG
GGGAAACTTCTTGCTGTCATTGGAGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005659XLOC_005659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010092-exon-sc0000102-1575043694:75060..75083TCONS_00010092-exon-sc0000102-1575043694:75060..75083Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1575043694:66667..66732TCONS_00010092-exon-sc0000102-1575043694:66667..66732Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1575043694:66143..66224TCONS_00010092-exon-sc0000102-1575043694:66143..66224Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1575043694:65277..65359TCONS_00010092-exon-sc0000102-1575043694:65277..65359Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1575043694:64996..65118TCONS_00010092-exon-sc0000102-1575043694:64996..65118Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1575043694:64325..64370TCONS_00010092-exon-sc0000102-1575043694:64325..64370Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1510915933:75060..75083TCONS_00010092-exon-sc0000102-1510915933:75060..75083Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1510915933:66667..66732TCONS_00010092-exon-sc0000102-1510915933:66667..66732Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1510915933:66143..66224TCONS_00010092-exon-sc0000102-1510915933:66143..66224Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1510915933:65277..65359TCONS_00010092-exon-sc0000102-1510915933:65277..65359Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1510915933:64996..65118TCONS_00010092-exon-sc0000102-1510915933:64996..65118Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1510915933:64325..64370TCONS_00010092-exon-sc0000102-1510915933:64325..64370Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1491911889:75060..75083TCONS_00010092-exon-sc0000102-1491911889:75060..75083Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1491911889:66667..66732TCONS_00010092-exon-sc0000102-1491911889:66667..66732Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1491911889:66143..66224TCONS_00010092-exon-sc0000102-1491911889:66143..66224Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1491911889:65277..65359TCONS_00010092-exon-sc0000102-1491911889:65277..65359Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1491911889:64996..65118TCONS_00010092-exon-sc0000102-1491911889:64996..65118Clytia hemisphaericaexon
TCONS_00010092-exon-sc0000102-1491911889:64325..64370TCONS_00010092-exon-sc0000102-1491911889:64325..64370Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010092-proteinTCONS_00010092-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:64325..75083 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
274.746	291.575	150.216	120.093	212.293	151.93	233.789	243.3	222.902	218.055	209.978	191.002	111.94	105.765	136.052	149.021	176.645	192.102	116.123	138.585	153.96	139.842	207.742	194.888	111.261	133.293	170.151	127.982	251.833	220.004
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008218ATPase_V1-cplx_f_g_su
IPR005772ATPase_V1-cplx_fsu_euk
Vocabulary: Biological Process
TermDefinition
GO:0034220ion transmembrane transport
GO:0015991ATP hydrolysis coupled proton transport
Vocabulary: Cellular Component
TermDefinition
GO:0033180proton-transporting V-type ATPase, V1 domain
Vocabulary: Molecular Function
TermDefinition
GO:0046961proton-transporting ATPase activity, rotational mechanism
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0034220 ion transmembrane transport
cellular_component GO:0033180 proton-transporting V-type ATPase, V1 domain
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
Blast
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BLAST of TCONS_00010092 vs. Swiss-Prot (Human)
Match: VATF (V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.089e-52
Identity = 75/116 (64.66%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:   58 KGKLLAVIGDQDTCTGFLLGGVGEVNAKRQKNFFVVNKDTTIHDIEEAFNSFVNRQDIAIVLITQKIAEEIRHVIDNHTLPIPSVLEIPSKDFPYDSSKDSILKRAKGMFSAEDFR 405
            +GKL+AVIGD+DT TGFLLGG+GE+N  R  NF VV KDTTI++IE+ F  F+NR DI I+LI Q IAE +RH +D H   IP+VLEIPSK+ PYD++KDSIL+RA+GMF+AED R
Sbjct:    4 RGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDLR 119
The following BLAST results are available for this feature:
BLAST of TCONS_00010092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VATF1.089e-5264.66V-type proton ATPase subunit F OS=Homo sapiens GN=... [more]
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