TCONS_00010089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010089
Unique NameTCONS_00010089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010089 ID=TCONS_00010089|Name=TCONS_00010089|organism=Clytia hemisphaerica|type=transcript|length=1438bp
CCAAGGTATTGAGATAGATTTTTAGGTAAATTTTGTTGTCTCAAATAGCT
TTCTGTAAAGCTCCTCAAGCAAACAAATCGAGCTTTATTTACTAAAGTAT
CTTCAGTAAAAAACGAAGGTAACCGAAAAATTTGGAGTTCATCTTTGATT
TGTGCCTGGCAACAAAAGCAACCTCAGTCAAATCCCAATTAAAAGTTAAT
CCACTGTTCTCAGATTTGCAATCATGTAGTATATGTTCTTTTCTTGTCTG
TAAATCGTATAAGTACACCTCATCTTTTGACAAAGAGTGGTTAGTAAATT
CCAAATGTGATCCAAAAATGAATTGTTTATCCAAAACATGAATAAgatta
tcaaaaatcaaaagctTGTAATTAGATATAACAGTTTTCGTATAAATTAC
CTCGTTCGAATGATTGATATGAAAGAATTTAATTGATTTGGTAGTATCTT
GATCACTGCCAATTATGACAATGAATTTAGAATCAGAATGGTGCATAATG
TGAGATTCTAAACGTTCCTCATTTTCAAGCTTCACATTTTCGGTTAGAAA
TTGATCACCAGTAAAAAGATAGCCATACAAGATTTCTAATCCGAATTTGT
CATGTTGAATAAAGAATCTGTCTGCATTGAAGTCAAATGAGAAAGACTTG
TCATGGTATTCAACATTAGTTGGTGCAGCACTTCCAAATGCAAGATGTTT
CAAATGGGTCAATCTTGTTTCATCATAAAGAAGCAAATCTACCACAAATT
CAGAATCTCTCGTCACAACCAAAATCACCAATAAATGACcatattccttt
gtttttaataATTGAGCATGTTCCAGTCTTTGGAATGTAGGAAAAGCTAA
TTCTAAAAGGTTATCTTCAGTGTCTTGAAAGGTTGCCTTGACCAGGGTTT
TGGCAGATGCTCCAAAAAGATGTTTTAACGTTCCAGTACGAATCATTATA
TGTTGTTCCCCAGTCTCTTTATTCCTGGCAGATTTCAAGATCAAAAACCA
ACGGTTGTGTACAGGACAGTAAGGTGCGCTGTGGTCAAGATAGTGAGGGT
ACCAGGAAGGCAGCTCAATCATAATCATTTGCAGTTTCTCCATGTCTTCG
TTGAAAGAACAAACACTAATTGTAGGGTATTCCTTGCTAAGAGCTTTGCC
ATCGCAAGGACCCGAATAACATGTAAAGTATCTGCCACTGTAATCAAAAC
CTTTTATTGAACTTTCCGAAGGTATTGGCAATTCCCCATACATCTCTTTG
GGTTCGATGCATGTTTTACGGGTGAAAGATTGCGGTAAGAAATGTTGGCG
TTGATTGGTCAGCATCTTGTCTTCTTAATGATGGTTTTAAATGATCGTTG
AGCTATCTACCAGAACGATTGATGACATTTAATCCACCcgttgattttca
aattcaataatttttcatattttttttcttctgaaaat
Run BLAST on NCBI

transcript from alignment at sc0000102:49942..51466-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010089 ID=TCONS_00010089|Name=TCONS_00010089|organism=Clytia hemisphaerica|type=transcript|length=1525bp|location=Sequence derived from alignment at sc0000102:49942..51466- (Clytia hemisphaerica)
CCAAGGTATTGAGATAGATTTTTAGGTANGACTAGCATGTTCGTATCTTA
CAAAACACGACATTTATTCATTATCTCCTATGAAAGTCCAAGGTATTGAG
GTAGATTTTTAGGTAAATTTTGTTGTCTCAAATAGCTTTCTGTAAAGCTC
CTCAAGCAAACAAATCGAGCTTTATTTACTAAAGTATCTTCAGTAAAAAA
CGAAGGTAACCGAAAAATTTGGAGTTCATCTTTGATTTGTGCCTGGCAAC
AAAAGCAACCTCAGTCAAATCCCAATTAAAAGTTAATCCACTGTTCTCAG
ATTTGCAATCATGTAGTATATGTTCTTTTCTTGTCTGTAAATCGTATAAG
TACACCTCATCTTTTGACAAAGAGTGGTTAGTAAATTCCAAATGTGATCC
AAAAATGAATTGTTTATCCAAAACATGAATAAGATTATCAAAAATCAAAA
GCTTGTAATTAGATATAACAGTTTTCGTATAAATTACCTCGTTCGAATGA
TTGATATGAAAGAATTTAATTGATTTGGTAGTATCTTGATCACTGCCAAT
TATGACAATGAATTTAGAATCAGAATGGTGCATAATGTGAGATTCTAAAC
GTTCCTCATTTTCAAGCTTCACATTTTCGGTTAGAAATTGATCACCAGTA
AAAAGATAGCCATACAAGATTTCTAATCCGAATTTGTCATGTTGAATAAA
GAATCTGTCTGCATTGAAGTCAAATGAGAAAGACTTGTCATGGTATTCAA
CATTAGTTGGTGCAGCACTTCCAAATGCAAGATGTTTCAAATGGGTCAAT
CTTGTTTCATCATAAAGAAGCAAATCTACCACAAATTCAGAATCTCTCGT
CACAACCAAAATCACCAATAAATGACCATATTCCTTTGTTTTTAATAATT
GAGCATGTTCCAGTCTTTGGAATGTAGGAAAAGCTAATTCTAAAAGGTTA
TCTTCAGTGTCTTGAAAGGTTGCCTTGACCAGGGTTTTGGCAGATGCTCC
AAAAAGATGTTTTAACGTTCCAGTACGAATCATTATATGTTGTTCCCCAG
TCTCTTTATTCCTGGCAGATTTCAAGATCAAAAACCAACGGTTGTGTACA
GGACAGTAAGGTGCGCTGTGGTCAAGATAGTGAGGGTACCAGGAAGGCAG
CTCAATCATAATCATTTGCAGTTTCTCCATGTCTTCGTTGAAAGAACAAA
CACTAATTGTAGGGTATTCCTTGCTAAGAGCTTTGCCATCGCAAGGACCC
GAATAACATGTAAAGTATCTGCCACTGTAATCAAAACCTTTTATTGAACT
TTCCGAAGGTATTGGCAATTCCCCATACATCTCTTTGGGTTCGATGCATG
TTTTACGGGTGAAAGATTGCGGTAAGAAATGTTGGCGTTGATTGGTCAGC
ATCTTGTCTTCTTAATGATGGTTTTAAATGATCGTTGAGCTATCTACCAG
AACGATTGATGACATTTAATCCACCCGTTGATTTTCAAATTCAATAATTT
TTCATATTTTTTTTCTTCTGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005657XLOC_005657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010089-exon-sc0000102-1575043694:51442..51466TCONS_00010089-exon-sc0000102-1575043694:51442..51466Clytia hemisphaericaexon
TCONS_00010089-exon-sc0000102-1575043694:49942..51354TCONS_00010089-exon-sc0000102-1575043694:49942..51354Clytia hemisphaericaexon
TCONS_00010089-exon-sc0000102-1510915933:51442..51466TCONS_00010089-exon-sc0000102-1510915933:51442..51466Clytia hemisphaericaexon
TCONS_00010089-exon-sc0000102-1510915933:49942..51354TCONS_00010089-exon-sc0000102-1510915933:49942..51354Clytia hemisphaericaexon
TCONS_00010089-exon-sc0000102-1491911889:51442..51466TCONS_00010089-exon-sc0000102-1491911889:51442..51466Clytia hemisphaericaexon
TCONS_00010089-exon-sc0000102-1491911889:49942..51354TCONS_00010089-exon-sc0000102-1491911889:49942..51354Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:49942..51466 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.6291	4.95441	6.40624	6.20355	0.311432	0.461433	1.44742	1.49404	0.827077	0.482103	0.848143	0.942043	0.575959	0.598139	0.688453	1.12581	0.93183	1.42154	0.736474	0.545889	1.25597	0.775982	3.07816	2.58786	1.11576	1.07877	0.237496	0.295705	1.63406	1.30576
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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