TCONS_00010084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010084
Unique NameTCONS_00010084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010084 ID=TCONS_00010084|Name=TCONS_00010084|organism=Clytia hemisphaerica|type=transcript|length=352bp
TGACAGACAGTTGAAATCAGCTCTCAATACGTTTGATGCATGTATTAAAT
TCAAGAGCGTACAGAACATCAATCTCTTGAAATCGCCTCCTGGTGACAAG
AATATTGAAAAGCAGCCAAACTTTTATTCCACcgcaaagaaaagaaaagc
gaAGAACAAGGTTCGCTTTGCGAGATCCACGTCAGGAgaactgaaagatt
tttttgagtTAAAACCATGGGAAGATCAAACGAGTAACCCCGACAACGGG
AGAGATGAAGTGCCAAGTACACAAATCACGTCTACAAGTCAAACGAGCAA
CCCCGACAATGGGAGAGATGAAGTGCCAAGTACACAAATCACGTCAACAA
AG
Run BLAST on NCBI

protein sequence of TCONS_00010084-protein

>TCONS_00010084-protein ID=TCONS_00010084-protein|Name=TCONS_00010084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
DRQLKSALNTFDACIKFKSVQNINLLKSPPGDKNIEKQPNFYSTAKKRKA
KNKVRFARSTSGELKDFFELKPWEDQTSNPDNGRDEVPSTQITSTSQTSN
PDNGRDEVPSTQITSTK
Run BLAST on NCBI

transcript from alignment at sc0000102:417880..418556+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010084 ID=TCONS_00010084|Name=TCONS_00010084|organism=Clytia hemisphaerica|type=transcript|length=677bp|location=Sequence derived from alignment at sc0000102:417880..418556+ (Clytia hemisphaerica)
TGACAGACAGTTGAAATCAGCTCTCAATACGTTTGATGCATGTATTAAAT
TCAAGAGCGTACAGAACATCAATCTCTTGAAATCGCCTCCTGGTGACAAG
AATATTGAAAAGCAGCCAAACTTTTATTCCACcgcaaagaaaagaaaagc
gaAGAACAAGGTTCGCTTTGCGAGATCCACGTCAGGAgaactgaaagatt
tttttgagtTAAAACCATGGGAAGGTGATTCCCCTTTTAAGTACTTTACA
TGACTACTTTAGATAATTTGCTGTGCCTTTCATTTAATTCAATTTATATT
GGTAAAGCGATACAACATAATCATCAGTTCAATATACTAACTTTATTAGA
ACGCTGTCTAGTTTGTTAAATTCGCTTCAATATTTATaccattttcattt
gtcaagCATCTAACAATGTAACAGCTTAAAATCTAATTCTAATTCTAATT
TTAGATCAAACGAGTAACCCCGACAACGGGAGAGATGAAGTGCCAAGTAC
ACAAATCACGTCTACAAGTATGAATAATTATCTTTACGGTCAAAAGAGAT
GATAATATCTGTgggtttttcaaattttgggttcgtttttgaaaatttcc
tttcAACTCTAGGTCAAACGAGCAACCCCGACAATGGGAGAGATGAAGTG
CCAAGTACACAAATCACGTCAACAAAG

Coding sequence (CDS) from alignment at sc0000102:417880..418556+

>TCONS_00010084 ID=TCONS_00010084|Name=TCONS_00010084|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at sc0000102:417880..418556+ (Clytia hemisphaerica)
GACAGACAGTTGAAATCAGCTCTCAATACGTTTGATGCATGTATTAAATT
CAAGAGCGTACAGAACATCAATCTCTTGAAATCGCCTCCTGGTGACAAGA
ATATTGAAAAGCAGCCAAACTTTTATTCCACcgcaaagaaaagaaaagcg
aAGAACAAGGTTCGCTTTGCGAGATCCACGTCAGGAgaactgaaagattt
ttttgagtTAAAACCATGGGAAGATCAAACGAGTAACCCCGACAACGGGA
GAGATGAAGTGCCAAGTACACAAATCACGTCTACAAGTCAAACGAGCAAC
CCCGACAATGGGAGAGATGAAGTGCCAAGTACACAAATCACGTCAACAAA
GGACAGACAGTTGAAATCAGCTCTCAATACGTTTGATGCATGTATTAAAT
TCAAGAGCGTACAGAACATCAATCTCTTGAAATCGCCTCCTGGTGACAAG
AATATTGAAAAGCAGCCAAACTTTTATTCCACcgcaaagaaaagaaaagc
gaAGAACAAGGTTCGCTTTGCGAGATCCACGTCAGGAgaactgaaagatt
tttttgagtTAAAACCATGGGAAGATCAAACGAGTAACCCCGACAACGGG
AGAGATGAAGTGCCAAGTACACAAATCACGTCTACAAGTCAAACGAGCAA
CCCCGACAATGGGAGAGATGAAGTGCCAAGTACACAAATCACGTCAACAA
AGGACAGACAGTTGAAATCAGCTCTCAATACGTTTGATGCATGTATTAAA
TTCAAGAGCGTACAGAACATCAATCTCTTGAAATCGCCTCCTGGTGACAA
GAATATTGAAAAGCAGCCAAACTTTTATTCCACcgcaaagaaaagaaaag
cgaAGAACAAGGTTCGCTTTGCGAGATCCACGTCAGGAgaactgaaagat
ttttttgagtTAAAACCATGGGAAGATCAAACGAGTAACCCCGACAACGG
GAGAGATGAAGTGCCAAGTACACAAATCACGTCTACAAGTCAAACGAGCA
ACCCCGACAATGGGAGAGATGAAGTGCCAAGTACACAAATCACGTCAACA
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005654XLOC_005654Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010084-proteinTCONS_00010084-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010084-exon-sc0000102-1491911889:417880..418103TCONS_00010084-exon-sc0000102-1491911889:417880..418103Clytia hemisphaericaexon
TCONS_00010084-exon-sc0000102-1510915933:417880..418103TCONS_00010084-exon-sc0000102-1510915933:417880..418103Clytia hemisphaericaexon
TCONS_00010084-exon-sc0000102-1575043694:417880..418103TCONS_00010084-exon-sc0000102-1575043694:417880..418103Clytia hemisphaericaexon
TCONS_00010084-exon-sc0000102-1491911889:418334..418396TCONS_00010084-exon-sc0000102-1491911889:418334..418396Clytia hemisphaericaexon
TCONS_00010084-exon-sc0000102-1510915933:418334..418396TCONS_00010084-exon-sc0000102-1510915933:418334..418396Clytia hemisphaericaexon
TCONS_00010084-exon-sc0000102-1575043694:418334..418396TCONS_00010084-exon-sc0000102-1575043694:418334..418396Clytia hemisphaericaexon
TCONS_00010084-exon-sc0000102-1491911889:418492..418556TCONS_00010084-exon-sc0000102-1491911889:418492..418556Clytia hemisphaericaexon
TCONS_00010084-exon-sc0000102-1510915933:418492..418556TCONS_00010084-exon-sc0000102-1510915933:418492..418556Clytia hemisphaericaexon
TCONS_00010084-exon-sc0000102-1575043694:418492..418556TCONS_00010084-exon-sc0000102-1575043694:418492..418556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:417880..418556 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.69859	6.29025	4.48885	2.74823	5.70273	6.03542	7.97416	15.2292	5.24989	5.3205	5.73801	4.90352	5.65005	12.0218	12.9607	17.2563	8.50332	24.2785	3.01028	4.41005	14.6323	15.0932	7.96493	6.46543	0	0	12.2468	14.0896	5.50734	6.73333
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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