TCONS_00010082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010082
Unique NameTCONS_00010082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010082 ID=TCONS_00010082|Name=TCONS_00010082|organism=Clytia hemisphaerica|type=transcript|length=395bp
AACCAGTCGCTTACAGAACACGCTAAAGGATACGCCACTTAACAACATTG
TAACGAAGGCTGACAAGACGCAGTTGGATGGTGTTCGCGCAGTTGTGGCA
AGCTGTCGGATCGATTATTCAAAATTGTATGCCACGAATTGCTTCAAGAT
CCTTCTCACCCCGTATTTGTTGagggaaaatcctatggaataTTTTTCTG
CTGGTGACGGTGCTCCAAGAATAATTTGTACCTCTGCCAAGTACGACCCT
GCTAATTTTGCCTCGCTTCTTGGGGAGGACTCGGCCTTCGATGTTATGGT
GGAGCAAAAGATTGTGGCGAGCTCctcaaacttttttgaatcGTTTTGTT
TAATGTTGGCTACGTATTACGTGTTTAACATTGCCTATCCAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00010082-protein

>TCONS_00010082-protein ID=TCONS_00010082-protein|Name=TCONS_00010082-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
TSRLQNTLKDTPLNNIVTKADKTQLDGVRAVVASCRIDYSKLYATNCFKI
LLTPYLLRENPMEYFSAGDGAPRIICTSAKYDPANFASLLGEDSAFDVMV
EQKIVASSSNFFESFCLMLATYYVFNIAYPK
Run BLAST on NCBI

transcript from alignment at sc0000102:368781..369327+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010082 ID=TCONS_00010082|Name=TCONS_00010082|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at sc0000102:368781..369327+ (Clytia hemisphaerica)
AACCAGTCGCTTACAGAACACGCTAAAGGATACGCCACTTAACAACATTG
TAACGAAGGCTGACAAGACGCAGTTGGATGGTGTTCGCGCAGTTGTGGCA
AGCTGTCGGATCGATTATTCAAAATTGTGTAAGTACTTTTTGCTTGTTCG
CAACGGAAATATTCCATGTTAGACTGAATATTCGTGAACTTACTGCAAAT
ATTAAGAAATGTCCACTACACTTATTTTAAGGACGCAGATTattatttat
ttgaaatttgagatgaaattgtttttatagATGCCACGAATTGCTTCAAG
ATCCTTCTCACCCCGTATTTGTTGagggaaaatcctatggaataTTTTTC
TGCTGGTGACGGTGCTCCAAGAATAATTTGTACCTCTGCCAAGTACGACC
CTGCTAATTTTGCCTCGCTTCTTGGGGAGGACTCGGCCTTCGATGTTATG
GTGGAGCAAAAGATTGTGGCGAGCTCctcaaacttttttgaatcGTTTTG
TTTAATGTTGGCTACGTATTACGTGTTTAACATTGCCTATCCAAAAC

Coding sequence (CDS) from alignment at sc0000102:368781..369327+

>TCONS_00010082 ID=TCONS_00010082|Name=TCONS_00010082|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at sc0000102:368781..369327+ (Clytia hemisphaerica)
ACCAGTCGCTTACAGAACACGCTAAAGGATACGCCACTTAACAACATTGT
AACGAAGGCTGACAAGACGCAGTTGGATGGTGTTCGCGCAGTTGTGGCAA
GCTGTCGGATCGATTATTCAAAATTGTATGCCACGAATTGCTTCAAGATC
CTTCTCACCCCGTATTTGTTGagggaaaatcctatggaataTTTTTCTGC
TGGTGACGGTGCTCCAAGAATAATTTGTACCTCTGCCAAGTACGACCCTG
CTAATTTTGCCTCGCTTCTTGGGGAGGACTCGGCCTTCGATGTTATGGTG
GAGCAAAAGATTGTGGCGAGCTCctcaaacttttttgaatcGTTTTGTTT
AATGTTGGCTACGTATTACGTGTTTAACATTGCCTATCCAAAAACCAGTC
GCTTACAGAACACGCTAAAGGATACGCCACTTAACAACATTGTAACGAAG
GCTGACAAGACGCAGTTGGATGGTGTTCGCGCAGTTGTGGCAAGCTGTCG
GATCGATTATTCAAAATTGTATGCCACGAATTGCTTCAAGATCCTTCTCA
CCCCGTATTTGTTGagggaaaatcctatggaataTTTTTCTGCTGGTGAC
GGTGCTCCAAGAATAATTTGTACCTCTGCCAAGTACGACCCTGCTAATTT
TGCCTCGCTTCTTGGGGAGGACTCGGCCTTCGATGTTATGGTGGAGCAAA
AGATTGTGGCGAGCTCctcaaacttttttgaatcGTTTTGTTTAATGTTG
GCTACGTATTACGTGTTTAACATTGCCTATCCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005652XLOC_005652Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010082-proteinTCONS_00010082-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010082-exon-sc0000102-1491911889:368781..368908TCONS_00010082-exon-sc0000102-1491911889:368781..368908Clytia hemisphaericaexon
TCONS_00010082-exon-sc0000102-1510915933:368781..368908TCONS_00010082-exon-sc0000102-1510915933:368781..368908Clytia hemisphaericaexon
TCONS_00010082-exon-sc0000102-1575043694:368781..368908TCONS_00010082-exon-sc0000102-1575043694:368781..368908Clytia hemisphaericaexon
TCONS_00010082-exon-sc0000102-1491911889:369061..369327TCONS_00010082-exon-sc0000102-1491911889:369061..369327Clytia hemisphaericaexon
TCONS_00010082-exon-sc0000102-1510915933:369061..369327TCONS_00010082-exon-sc0000102-1510915933:369061..369327Clytia hemisphaericaexon
TCONS_00010082-exon-sc0000102-1575043694:369061..369327TCONS_00010082-exon-sc0000102-1575043694:369061..369327Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:368781..369327 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.257224	0	0	0.459157	0.4822	0.796377	1.54597	1.01626	1.1417	0.922185	0.324926	0.697392	0.143188	0.293527	0	0	0	0	0.218699	0	0.409579	0.18277	0.261543	0.279126	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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