TCONS_00010078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010078
Unique NameTCONS_00010078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010078 ID=TCONS_00010078|Name=TCONS_00010078|organism=Clytia hemisphaerica|type=transcript|length=1331bp
gatccatactctctaacAAAACATTACCCAGTGAGGTGAGAGTACGGTCG
TAATACTCGGCCTACTACTGTCTTTCCTCTGTTTTCCGTTAGGTCCGGTA
CACActtcgaaatttttttatatagcAGTGTAGAGTCACTCAGCTATATT
CTATCACCCTCCAGCGGTGCTGTGATACAGAAGTGTCTGAAGACTGAATA
GGCTAACTCAGGTACGGGAAGATAAAACACGTTTCTCTCTAATAAGCCCC
TATTTTAGTTGCTTATCATCTAAATGTGGCAGTGTTATTTAATTGTTATA
GAATGAACACTAATAATAGCAACGAGGCACAAGAGATCCATGCCGAACTA
ATCCATGATGAAGATGTTTTGAAAGTAAGGAATCAGTCAATTGATGATGA
ACTTCACAATCTATCCATCATTCATCCATATGGATACACTTTACCAGAAA
GATATGTCCAATACCATCAAAGGATACAAGAATTTGATATCCTCGATGAT
GATGTCTTCATTGCAACTCATCAAAAATGTGggaCAACGTGGATGACAGA
GCTTGTGTGGCGTGTAAGAAATGATCCTGAATTCAAAGAAACGAAAGCTT
CACTGAAAGAACGTGTTCCATTCTTAGATGACACCATTATTGACCATAAA
GATCGTTTATCAGTTTCCTCTTTCGAGCTCACAGAGCAATTAAATCGACC
AAGAACCATCAAGACGCATCTTCCTTTTGACCTTTTACCAAGACAACTAC
AACAGAACAAAGCCAAGATCGTATGTGTTATCAGGAACCCAAGAGACACA
TGCCAGTCTCTTCTCAACCATTACCGAGTCCTCGAGAAGTACACCGGGGA
CTTTGAAACCATTGCTAACGTTTTCTTAAAAGATTTGGGATTCAACTGGG
GACCTTTCTTTAAGAATGTATTGAGTTACTGGGAGCGACGTCACCAAGAT
AATATACTTCTAGTATCTTATGAAGAAATGCAACAAGATTTGGGCTTGGT
GATCAAGAAAGTTGCCAAGTTTGTTGATGTCTCAATGGATGAGAACCAAG
TTATATCGTTGGTCGAGAAGTTATCCTTCAAAAGCATGAAACAGAACGCA
GTCAACAGTTACAAAGGAGGACCACATGATTTGAGCAAGCTATACAACAA
AGGAAAAACAGGaagttggaaagatatttttacaCCTAGTAtgatcgaaa
agtttgaaaaatgggaAGAAAAATGGTTGACAGATACAGATTTGACATTC
ACCTACGAATAGGACAtattagatttttaaaaaaactagaaAGGGAActg
tttaaaatgaaattttatgaaataaaatgag
Run BLAST on NCBI

transcript from alignment at sc0000102:307295..311585+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010078 ID=TCONS_00010078|Name=TCONS_00010078|organism=Clytia hemisphaerica|type=transcript|length=4291bp|location=Sequence derived from alignment at sc0000102:307295..311585+ (Clytia hemisphaerica)
gatccatactctctaacAAAACATTACCCAGTGAGGTGAGAGTACGGTCG
TAATACTCGGCCTACTACTGTCTTTCCTCTGTTTTCCGTTAGGTCCGGTA
CACActtcgaaatttttttatatagcAGTGTAGAGTCACTCAGCTATATT
CTATCACCCTCCAGCGGTGCTGTGATACAGAAGTGTCTGAAGACTGAATA
GGCTAACTCAGGTACGGGAAGATAAAACACGTTTCTCTCTAATAAGCCCC
TATTTTAGTTGCTTATCATCTAAATGTGGCAGTGTTATTTAATTGTTATA
GAATGAACACTAATAATAGCAACGAGGCACAAGAGATCCATGCCGAACTA
ATCCATGATGAAGATGTTTTGAAAGTAAGGAATCAGTCAATTGATGATGA
ACTTCACAATCTATCCATCATTCATCCATATGGATACACTTTACCAGAAA
GATATGTCCAATACCATCAAAGGATACAAGAATTTGATATCCTCGATGAT
GATGTCTTCATTGCAACTCATCAAAAATGTGGTAAGACTGTACCTATATT
TACAATTCATACAACAGGAGCTTAAAGGGAAGTAAGGCATCAGGTTAGTC
TCAATGATATATCCTTGCCTCCTCACAGAATCTTTGAGAACGATCTTGTC
acaattaatttcaaaaattgacttcaaatatGTTTGAATTTCTTCTCAGT
AAGAGtggatttttataaatttcagtattttgatacttaaaaaagtttaa
aatcagctgttttaagcaaaataaGGTTTAGGCTTTACCCTAAAAGAGTT
ACTTTCAATTTAGCTatttctctcaaaattttgaagggaCAACGTGGATG
ACAGAGCTTGTGTGGCGTGTAAGAAATGATCCTGAATTCAAAGAAACGAA
AGCTTCACTGAAAGAACGTGTTCCATTCTTAGAGTAAGTCATTCGTTGCA
AAATTGAGCATTtgattaaagtctgtctcgaaataatttgcagctggaga
caaaaatggctgtaacttttgatagaattcgaatcaagttgcgattaagt
gcttgttaaaaagatNTGATGATGCGGCGAAAATTCAATTTCGATCTACG
AGATACGAAGAAGTCTTAAAGATCTTCTTGAGTCTCCGTAACGACTGCCC
AAGCGGCTACGATGGAATAACTATCAAATACCTCAAACCGGTCAGTGACT
ACTACAATTAATAAAACCCAGTATCTTTCCGGATAAGttgtaggctgctg
gcatccactaactgATTCGTGATCCTTATAGATTCTACTACTAACTGAGA
TTTTGTAGAGATTCAGACTACCTAGACAAGTGGAAAACCCTACGCTTGCA
AAGAACTTTCGACCCGTTTCTTTTCTACCTGTACTGTCAAAGGTTTTCAC
AGAAAATCATCCTCATACATATCCTTGAGCTCATCGAGTCATCCTTATAC
AATCAAACGCAATCCGGTTTCCAGAAGGGCCATTCTACATCGACCATTCT
CCTTAAATTGAGGAGATGCCATCAAGAAATCTAtgaacaaaaatgaagaa
acgTAGAATTGTGAGGgataatagcgaggttaagcaagaaacTATCTACA
ACGTACAGAATCTACGACGTGAGTTTTTCGCAAGCTAGTGCCCGAATCTC
AAGGCTAAGCTCTATCTCGTAAAGTTTGACCTGTACGTTGTAATTTGGAG
CCTGGGTTTATTATAAATATGCCAAATCTCACGTCATAGATTCCGTACGC
CGTAGATAAGCTTCTTGCTTAACTCGCTAATGACTAAAAGGAGAATTCTC
AATtgctttccattttttttttattatattaagCGTCTAATTTTGTAATA
ATTTCAGCACATGCGATCGTTTCTTTCTCATTATCAGCATTGACAACTCG
TAGTTTCAGCCAGTATTTAccctaaaagaaaaagaaaatattttgataaa
atttacaccgcttttcttttttgataatatttcacTCGGAactatctttt
taacgagcacaaaatcgtaacttgatttgaattctatcaaaagttacagc
catttttttctccagctgcaaattatttcgagacagactttaggtaGGCA
AATCGTCTACTGCATACTCTAACGGGGAgggtttgaaaatgttttgaaaa
ttaatgAGAAGGGGGGAGACGTTTATTCGGGACCTAGAGTAACAGGCTTT
TGCTTAAACTCTAATGAACAAGCTTTTATACATTAAGTATAAAATGTTGT
ATTgttctaaaaacattttaatcaaGATTCAGTAAATCAGATGCATGGAT
GGCAACCTCCTGTCTCATATTTGTTAGCCAGTGAACGTAATATAAAGAAG
ATAGATGTCAATAGGGATGGAAAATCTGATGTCTTCAATGGTTAGGGAAT
TCTAACAATGTTTCTGTCCTCACAAAACCAATCCTCCTAGCATCAcggta
tttgttttttttaagaaagtttgATGTAATAGGACGGTTTTTCCGAAAAG
TATTGTGATTGATCGAGGTTGTCAGATGAGTCTTAAGATTGTTGGTTCAA
Ccctcagccgggtcataccaaagattctcaaaatggtacttaatgcctct
ctgcttgatgctcagcaatttaaaaaaagaatcaagggtaagtggagaaa
ttcaGGGAGAAAGAGCGGCACCCTCCCCTTCCTTCCGGTAGATAGCtatt
gaaagaggagccttcgggtcacctccgactgcggtcgcagacttacttac
ttaaggTAAAATTTAAACTTATTTATATTATAGTGACACCATTATTGACC
ATAAAGATCGTTTATCAGTTTCCTCTTTCGAGCTCACAGAGCAATTAAAT
CGACCAAGAACCATCAAGACGCATCTTCCTTTTGACCTTTTACCAAGACA
ACTACAACAGAACAAAGCCAAGGCTAGTACCATTGTAATTTTAGGTTAAT
TTCTACTCGGTCGGACAAAAAAATCTAGATTGCTTCCTTCAGGATCTGTC
ACAaaccaataataaaaaaattacctcTTCAGTCCTCCCTCGGGTCGCGT
TCTGGTTTTCGTACCAAAAAAAATTGCATAATAAAGCAATACTACTTGTC
TCAAAATGTCTCTGGttttagaatattttaagacttaaaaaattgagaaa
gattttaaattttattctttTGTCATCTTTCCTAGGATTATCATATACAG
TTGACGATacactccattattcgataaaatataaagtccccgtcaacaag
aaactctcgtaaacgacgctcccttattcgaaaAGCTCCCGATAATCCAA
tcccccttgaagatcgaattagggAGCGTCAACTCTACAGAGAAAACATT
ATTACAGAGACCGTTCATTATAATTTTCAGATCGTATGTGTTATCAGGAA
CCCAAGAGACACATGCCAGTCTCTTCTCAACCATTACCGAGTCCTCGAGA
AGTACACCGGGGACTTTGAAACCATTGCTAACGTTTTCTTAAAAGATTTG
GGATTCAACTGGGGACCTTTCTTTAAGAATGTATTGAGTTACTGGGAGCG
ACGTCACCAAGATAATATACTTCTAGTATCTTATGAAGAAATGCAACAAG
ATTTGGGCTTGGTGATCAAGAAAGTTGCCAAGTTTGTTGATGTCTCAATG
GATGAGAACCAAGTTATATCGTTGGTCGAGAAGTTATCCTTCAAAAGCAT
GAAACAGAACGCAGTCAACAGTTACAAAGGAGTAAGTTCTTTTACCACCT
GAATATTATCGGAGTAATTTCGCTTCGCTAGATTAACTTTATCAATTTGG
TCATTAGTCATTAAAAATAGTCCGCTAACTTACTACATTTTAAAGGGATA
GTCatatgttttagatttttcggTCGGTATTTATTTCCAGTCCTTTTATG
CAAAGCCAATGTAAAcacattttcagaatttgtcaTTTGGAAGCTAGATA
GGCTAAACGATTTTAAATCGGTTAAGCTTCACAAAACTCATTATATTTCG
AAACTTAAATGCTTTAATGAAACTAACCCTCTTATCTAcgtaatttcaaa
atttagtcaAGGTCTATTTCTTTTACAGGGACCACATGATTTGAGCAAGC
TATACAACAAAGGAAAAACAGGaagttggaaagatatttttacaCCTAGT
AtgatcgaaaagtttgaaaaatgggaAGAAAAATGGTTGACAGATACAGA
TTTGACATTCACCTACGAATAGGACAtattagatttttaaaaaaactaga
aAGGGAActgtttaaaatgaaattttatgaaataaaatgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005651XLOC_005651Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010078-exon-sc0000102-1491911889:307295..307825TCONS_00010078-exon-sc0000102-1491911889:307295..307825Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1510915933:307295..307825TCONS_00010078-exon-sc0000102-1510915933:307295..307825Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1575043694:307295..307825TCONS_00010078-exon-sc0000102-1575043694:307295..307825Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1491911889:308131..308227TCONS_00010078-exon-sc0000102-1491911889:308131..308227Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1510915933:308131..308227TCONS_00010078-exon-sc0000102-1510915933:308131..308227Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1575043694:308131..308227TCONS_00010078-exon-sc0000102-1575043694:308131..308227Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1491911889:310078..310216TCONS_00010078-exon-sc0000102-1491911889:310078..310216Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1510915933:310078..310216TCONS_00010078-exon-sc0000102-1510915933:310078..310216Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1575043694:310078..310216TCONS_00010078-exon-sc0000102-1575043694:310078..310216Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1491911889:310675..311025TCONS_00010078-exon-sc0000102-1491911889:310675..311025Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1510915933:310675..311025TCONS_00010078-exon-sc0000102-1510915933:310675..311025Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1575043694:310675..311025TCONS_00010078-exon-sc0000102-1575043694:310675..311025Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1491911889:311373..311585TCONS_00010078-exon-sc0000102-1491911889:311373..311585Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1510915933:311373..311585TCONS_00010078-exon-sc0000102-1510915933:311373..311585Clytia hemisphaericaexon
TCONS_00010078-exon-sc0000102-1575043694:311373..311585TCONS_00010078-exon-sc0000102-1575043694:311373..311585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:307295..311585 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.4508	10.8659	4.87306	2.91292	3.31893	3.65327	0.207151	0.144433	0.0403458	0	0.155137	2.17208e-06	7.30263	9.98859	2.1902	3.626	1.67297	1.4689	0.247885	0	0.757062	0.188261	7.38729	4.69544	0	0	10.7129	9.89952	3.75815	3.17316
Blast
[Close]
BLAST of TCONS_00010078 vs. Swiss-Prot (Human)
Match: ST1C4 (Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.819e-38
Identity = 96/297 (32.32%), Postives = 151/297 (50.84%), Query Frame = 3 
Query:  396 DELHNLSIIHPYGYTLPERYVQYHQRIQEFDILDDDVFIATHQKCGTTWMTELVWRVRNDPEFKETK-ASLKERVPFLDDTIIDHKDRLSVSSFELTEQLNRPRTIKTHLPFDLLPRQLQQNKAKIVCVIRNPRDTCQSLLNHYRVLEKY---TGDFETIANVFLKDLGFNWGPFFKNVLSYWERRHQDNILLVSYEEMQQDLGLVIKKVAKFVDVSMDENQVISLVEKLSFKSMKQNAVNSYKGGP-----HDLSKLYNKGKTGSWKDIFTPSMIEKFEKWEEKWLTDTDLTFTYE 1259
            D    LS+ +  G   P        +I  F    DD+ I+T+ K GTTW  E+V  ++N+ + +++K A   +R PFL+  I         S  E    +  PR +KTHLPF LLP  L +   KI+ V RNP+D   S   H++ + K     G +E     FL      WG + ++V  +WE + +  IL + YE+M+++    I+K+A+F+   +D+  +  +V   SF  MKQN + +Y   P     H +S    KG  G WK  FT +  E+F++  +K +TDT LTF ++
Sbjct:   12 DGTKRLSVNYVKGILQPTDTCDIWDKIWNFQAKPDDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFLEMKIPS-----LGSGLEQAHAMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYY-HFQRMNKALPAPGTWEEYFETFLAG-KVCWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIMDHSISPFMRKGAVGDWKKHFTVAQNERFDEDYKKKMTDTRLTFHFQ 301
The following BLAST results are available for this feature:
BLAST of TCONS_00010078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST1C41.819e-3832.32Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE... [more]
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