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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010072 ID=TCONS_00010072|Name=TCONS_00010072|organism=Clytia hemisphaerica|type=transcript|length=1730bpRun BLAST on NCBI protein sequence of TCONS_00010072-protein >TCONS_00010072-protein ID=TCONS_00010072-protein|Name=TCONS_00010072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp GKKKKKMNTIVGITFLCTLIRGIASKSDAFTSIHDIKQILHKERVLTRYLRun BLAST on NCBI transcript from alignment at sc0000102:207831..217649+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010072 ID=TCONS_00010072|Name=TCONS_00010072|organism=Clytia hemisphaerica|type=transcript|length=9819bp|location=Sequence derived from alignment at sc0000102:207831..217649+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000102:207831..217649+ >TCONS_00010072 ID=TCONS_00010072|Name=TCONS_00010072|organism=Clytia hemisphaerica|type=CDS|length=17259bp|location=Sequence derived from alignment at sc0000102:207831..217649+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010072 vs. Swiss-Prot (Human)
Match: P4HA1 (Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2) HSP 1 Score: 266.544 bits (680), Expect = 1.100e-80 Identity = 168/515 (32.62%), Postives = 284/515 (55.15%), Query Frame = 2
Query: 89 FTSIHDIKQILHKERVLTRYLNLAIEAEKERLGELEGMRDSMKMKLLNLNISSMDDYVGNPLNALHTIRRFTADWNEITNTLNTTRVQEFFNEWD-RNVKLPTLEDQKGAVSGILRLQNFYKINTRNVSRGFLSSTNPISKTEEIGVGLMWAMGYEAFKQKEWFLMKEWLDLALERIGDLEQSDGCKRSWIVDFLSYAEFQLGDYERSLDLAYQCLEYSPDDQKHHNNIEQCXXXXXXXXXXXXXX---------------------PVEQLRYQLCRGEGMRKPTIDEELQMVCWYK--NDQPILRYKPQKVERLWARPEIVMFRELLNDEQTGTLIDLSLQKLVRAGLNGQDVTSEKYTNSRVAKHAWLSMKESPIIRNMGKRAQAMTNLNMKYAEHLQIANYGIGGHYDAHYDYQTGE--NVFPDLKTGNRIATLMYYLSDVEXXXXXXXXXXXXXVYPSKGDAVFWWNLKQNGKVDESSKHAGCPVLMGQKWIANWWIHEYGQEFRRPCPL 1555
FTSI + ++H E+ L L I+AE+++L +++ + + +L + + +VG+P+NA ++R +W+E+ N + F + + P EDQ GA +LRLQ+ Y ++T +S+G L + + + +G A+ + +++ + W++ AL ++ + E S K S ++D+LSYA +Q GD +++L L + LE P+ Q+ + N++ + ++K + + + P Q LCRGEG+ K T + ++ C Y N P P K E W +P I+ F ++++D + + DL+ +L RA ++ + + R++K AWLS E+P++ + R Q +T L++ AE LQ+ANYG+GG Y+ H+D+ + + F +L TGNRIAT ++Y+SDV AGG T F +V+P KG AVFW+NL +G+ D S++HA CPVL+G KW++N W+HE GQEFRRPC L
Sbjct: 22 FTSIGQMTDLIHTEKDLVTSLKDYIKAEEDKLEQIKKWAEKLD-RLTSTATKDPEGFVGHPVNAFKLMKRLNTEWSELENLVLKDMSDGFISNLTIQRQYFPNDEDQVGAAKALLRLQDTYNLDTDTISKGNLPG---VKHKSFLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVS-VLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAKEKDVNKSASDDQSDQKTTPKKKGVAVDYLPERQKYEMLCRGEGI-KMTPRRQKKLFCRYHDGNRNPKFILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRPCTL 530 The following BLAST results are available for this feature:
BLAST of TCONS_00010072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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