TCONS_00010071 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00010071
Unique Name	TCONS_00010071
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1297

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000102:195340..202094+
coding sequence from alignment at sc0000102:195340..202094+

transcript sequence

>TCONS_00010071 ID=TCONS_00010071|Name=TCONS_00010071|organism=Clytia hemisphaerica|type=transcript|length=1297bp
GCAGCATGAAAAAGATAATCTGTACatccatcaaaatcattttatcaCTC
GCTTTTTATGTGAGGATTGCTTCAAGCAACGATGCTTTTACTTCGATACA
CGATATTAAACAAATTTTACGAAAAGAACAAGTACTTATCGAACAGCTAG
ATCTCTCTATCGAACAAGAGAAAGCAAGGATACGAAAAATTGAGCAGATG
AGAGATTCATTAAAGAAGAAAGTAGCTCCCATTACGAAAACTTCAATAGA
TGAATATGTTGGGAATCCGTTGAATGCTTTGTATACGATAAGACGATTCA
ATAAAGACTGGCAAAGAGTTAAAGATGAACTAAATAATGAAGGATTCAAC
AAAGTTTGGAACGACAAGCCTGAGTTACTACCAACAAATCAAGATCAAAA
AGGTGCAATTGGTGGAATACTGAGGTTGCAAAACTTCTACAAAATCACCG
CACACAATATTTCAAAAGGAATACTACTGAACAATGACAGTGAAAAGAAA
CCTGAAGAAATGGACCTTGGTTTGATTTGCACGATAGGAGACGAATCATT
CAAACAAGAAGATTGGTTTTTGATGAAAGAATGGCTTGATCTTGCATTAG
AACGAATCGGAGATTCGGAGGAAAGGGATGGTTGTAAACGGATGTGGATT
GTCGACTTCTTATCGTATGTTGAATTTAAGCTTAATCACTTTGAAAGAGC
ATTGAAGTTAAATTACGAATTATTGGCAAAATATTATCCGAACGAAAAAC
GAATAACAGATAACATTGAAAATATGAAGAGTTTGATAAAAGACGGTAGC
AACAAACCGTTAGTAAAACCTAATGATAACAATTACAAGAAACTTTGTCG
TGGTGAAAATCTTAGAAATATGACACAAAACGAGGAACTACAAATGGTGT
GTTGGTTTAAAAATGATCAACCCATACTTCGTTATAAACCACAAAAAATT
GAACGTCTTTGGGCAAGACCAGAAATTTTGATGTTTAGAGAATTATTGAA
TGATGAAAAAATTGGAACATTGATCAATCTCAGTCTTCAAAAGCTTCAAA
GAGCTGGTTTACATGCAGAAACAAAAGATCAAAAACAATATGACGACTCC
AGGACATCAAAGCACGCATGGTTATATCCAAAAGATATCCCTTTGCTCAA
ACAAATGGAACGTCGTGTTCAAACAATGACCAATTTAGATATGAGATATG
CAGGTAAGGTAgaatctctttaactcgaacctctataacttgaatgcctc
cttaactcgaacaagttttatgccTTATTAGCCTTACTCCAAAAAag

Run BLAST on NCBI

protein sequence of TCONS_00010071-protein

>TCONS_00010071-protein ID=TCONS_00010071-protein|Name=TCONS_00010071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
SMKKIICTSIKIILSLAFYVRIASSNDAFTSIHDIKQILRKEQVLIEQLD
LSIEQEKARIRKIEQMRDSLKKKVAPITKTSIDEYVGNPLNALYTIRRFN
KDWQRVKDELNNEGFNKVWNDKPELLPTNQDQKGAIGGILRLQNFYKITA
HNISKGILLNNDSEKKPEEMDLGLICTIGDESFKQEDWFLMKEWLDLALE
RIGDSEERDGCKRMWIVDFLSYVEFKLNHFERALKLNYELLAKYYPNEKR
ITDNIENMKSLIKDGSNKPLVKPNDNNYKKLCRGENLRNMTQNEELQMVC
WFKNDQPILRYKPQKIERLWARPEILMFRELLNDEKIGTLINLSLQKLQR
AGLHAETKDQKQYDDSRTSKHAWLYPKDIPLLKQMERRVQTMTNLDMRYA
GKVESL

Run BLAST on NCBI

transcript from alignment at sc0000102:195340..202094+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00010071 ID=TCONS_00010071|Name=TCONS_00010071|organism=Clytia hemisphaerica|type=transcript|length=6755bp|location=Sequence derived from alignment at sc0000102:195340..202094+ (Clytia hemisphaerica)
GCAGCATGAAAAAGATAATCTGTACatccatcaaaatcattttatcaCTC
GCTTTTTATGTGAGGATTGCTTCAAGCAACGATGCTTTTACTTCGATACA
CGATATTAAACAAATTTTACGAAAAGAACAAGTACTTATCGAACAGCTAG
ATCTCTCTATCGAACAAGAGAAAGCAAGGATACGAAAAATTGAGCAGATG
AGAGATTCATTAAAGAAGAAAGTAGCTCCCATTACGAAAACTTCAATAGA
TGAATATGTTGGGAATCCGTTGAATGCTTTGTATACGATAAGACGATTCA
ATAAAGACTGGCAAAGAGTTAAAGATGAACTAAATAATGAAGGTATACCT
CTTATAAGAGGAACGAAAATGAAGAGACGGAACTATGCAAAAACATAGAA
TTCTCTCAACAGGGATaaaagcgagtttatgtatttgcaattttgaggac
ggtagagtgactgaagctaTTTGGAATTACCCgtagttttgacccgcaaa
gtcgaggacggtaaaagtaaCGATTTACAGTCGTCCAGTCATTCAAGATG
TAGACAGATTAGAACCTCatcgtctccgtcgcagaaacacacaatacata
aactcggtaatacaCCTATCAATACCCTTAACAGAGCGGTCGGCTTTTGA
GGGGTCTGGTAACGAATTTACAAGAATAATGACGTCACAATCCTTTGGCT
TTTAAATAGGCCAATACAATGACGTAATTCTTCCTGGTAAATTCGAACTT
AGTCCCTACATGATTTAAAGGTTGATAGGTGTATAGCCCGTCGGTCtact
tttttattcagtttaaAATACATATTATTCATATCATCATGAAGGATATG
CCAAAGGGTATTAACACGGGAATAGCTCGACAACCTCTATTTAGTAGCGA
ACCACTCCCAACTGAAGACTGAGGGCAATTTGAACAGGGGTGGATTTTTG
ATTGATCttccatagcaatattttgtaGTGTCAGATGCAAGACTGAGAGG
TTAGTGGGTTAAGAGATGCTAAGTTATTCTTTATATTATGACCATAGGGT
TTAGTACGAAGCCCGGCAAATGCCAATAAGAACAAAATACCACGACTACC
TGTCTACCACTATTGACCTTTACATACCCTGGATAAAGTTTCTCGATCCT
GGCCCCAGCAAAATCTTTattcggagttttttgaaaagtggtaccctaaa
gGTAGCACCAGTCAATGTGCAtggaaaaatttttgaacagaaaatttcat
tgaattacAAATTGACCCACATCGAtaagggtaccacttttcaaaaaact
cttaTCAAAGATGATgtatatagcttggtccagggtatataaaagTCCAG
TGTCTGCACACATATGCCTCATGGTGTCAAgataatgaaaaagaaatttt
ttgaaattctacaGATTTGTATTTACAGGATTCAACAAAGTTTGGAACGA
CAAGCCTGAGTTACTACCAACAAATCAAGATCAAAAAGGTGCAATTGGTG
GAATACTGAGGTTGCAAAACTTCTACAAAATCACCGCACACAATATTTCA
AAAGGTATTCCTCAACCTATCAAAATTGAATATTCTCACAATACAGGTAT
CTTTAATCATTTGGCCCTCATCGGTCCATTCCCCTGGTTGAGTTATACTC
ATTATGCCTTTGTGCCATTTATTTTCATGTCCTTAGCAATTTAAGAGAAT
AAGCGCGTGTAAAAAGATGAAACAAActagggagaaagagtggaTTGTGA
AATAGACTGTGAAATGGTAGAGGATGCTATTCGGCCGTTAAAGTGATAGT
AAACGCGGGGACATAATATATGTGAGGAAATTcatagaatttctgtccaa
ctatcttcgtccttattaggaatCGTCAGTACTGCATACTGCAACCTGGC
TCGATCGAATTGCCTAGCATTTCACGTCATACAACTAATTGTAGCGCAGA
CTGAAAGAAGAAGTGGAGCCAAGCTTTGAAGATTTGTAGTCGTAAATGGT
AGTATACGGAAAAGACAGCGGCGGTAGCATTTGGGGCAAACACTGCAGAC
ACTTCCGTCACTATTCACTCTACACAAAATTATCTTGGTTAATCCCTAAA
TTATTCGCTTTTTAGTGATCTCGTGTAGAAGATAGGATCATCTAGTGAAA
TGGAAGCCTTTAAACCATTGATAAATAAGACTTACTTACTATTATTTCAT
ACAGGAATACTACTGAACAATGACAGTGAAAAGAAACCTGAAGAAATGGA
CCTTGGTTTGATTTGCACGATAGGAGACGAATCATTCAAACAAGAAGATT
GGTTTTTGATGAAAGAATGGCTTGATCTTGCATTAGAACGAATCGGAGAT
TCGGAGGAAAGGGATGGTTGTAAACGGATGTGGATTGTCGACTTCTTATC
GTATGTTGAATTTAAGGTGAtttaacgttttttttataagaacgcaAGGC
TCAATTTTGTCCGAAATCTTAGCAGAaatactttaaccggattaaatttc
gcgagattaaatttcgcgagctaaaaaaatcgcgaaatttcgcgagtcag
agctttgaaatattttatctgatattccgatggcgtattggcggccgccc
acgctaaagctctaaaggagcggaccaatataccatcggagaggttTAGT
AGTAGccctttgatgtgccgacaaCAGTCGGGTTCAATGGCTATATCTTC
GCTTGCTCAAGAATTTTGTTCGTCCTGACTGAACAAAATTANGGTTGCAA
AACTTCTACAAAATCACCGCACACAATATTTCAAAAGGTATTCCTCAACC
TATCAAAATTGAATATTCTCACAATACAGGTATCTTTAATCATTTGGCCC
TCATCGGTCCATTCCCCTGGTTGAGTTATACTCATTATGCCTTTGTGCCA
TTTATTTTCATGTCCTTAGCAATTTAAGAGAATAAGCGCGTGTAAAAAGA
TGAAACAAActagggagaaagagtggaTTGTGAAATAGACTGTGAAATGG
TAGAGGATGCTATTCGGCCGTTAAAGTGATAGTAAACGCGGGGNTATAAA
TGTCTTTATACTTTCTTAGTATTACTTTTAGtattcagtgtaatttctgt
aaatgcaccaaccttttaaagattgttttttGCACAcaaatgttgaattt
tttttgtttgttttggtggactgatttttactgatttttctcAAATCCAA
ACTCAAAGATCATAAAGAAACAGTAACAGGTATGTTCCTTATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTGACCG
ACAACAGTCAAAGTCAGTCAAAGTCTCTAGCAGCAGTACAAATATGTGTA
CAAAACAGATAATTTTGTCTTCAGAAAGATCTACAGACTTCTGTATAGTT
AGTTTGTATCTTACTAACGATTAACCTCACTTTTTGTGTACCAACAGAAC
agcccaattttgtattttacagagcacattgaaaattcacttttgaggTC
CTGAAAACTATGAAGGTTAGTGTTATATTTATCGAGTTTGTCTAGGTAAG
TaggaaaaagcaataaattcatgttttaagtTGTATTTTCATGTAAATGA
AGCTAAATTAGGGACTGTTTATGTTTGTTTACTAGTACATGAATATGATT
CCGAACCATATCGAATATGGTGCTAATAGCAAATATGGTGCCAGCCTAGA
GAATATAACAAATCTGATGCGAATCagatttgttattattttctgcTTAG
CACTCGCATCCGATAGGAATTAGATGCTAACTTGTTATGTTGATCGTTTC
CAAGCTCCTCACAAAATGTTTAAACGCGGTcaagtcaaatcccgtaatgc
aaaccttccagatgttaaaatatgcccgacctttagagcaaagcgtgtcg
tagcatatttccacatctggtaccagataatgaaatatttcgcgtggatt
taatttcgcgaataagccagaaaacagctgaaaatagccaatttttgcca
taaatggagacttggaactagtttctccgccaaaaatacaattttaaaag
ttttgcggtggatttaatttcgcgaatcaggaatctcacgcgtgttCGCG
AGTTTTAATTTCGCGAAAATGGCAAAAATTCGCGAAATCGCGAAATTTAA
TCTCGTGAAAATTAATCCGATTAAAGTATAATCCATGCCAGATTTTAGAA
ATGACTAATGCTGAATGTAAGCTCTTCCAAGTCAATAGGTGAATAAAGTA
ATCATTTtgagaacatttaagcctgaaaatcacGTAACCTCGACCAAAAT
AACCACAGCTCCTTGTATTGTAGATAGCAGGAATTTTTTAGGGTTTTGGC
TAAGCAAGTTTCCATTTTTGTGTCCCAAGAGTATTATTTTTCTTGAGTTG
TAGATCAGTCGTAAAACTGACTGCTGGCATAGCAGAGTAAATCTCATGTT
TATCCCCCATATATAACCTGCACGGATCGGAAATACAAGAGCGTGGGAAA
CGTTCATTTGATTCCTTCATTTAAATATCAATATATTATTTCACAATTAA
TTCTTCAATTTGCTTTAGCTTAATCACTTTGAAAGAGCATTGAAGTTAAA
TTACGAATTATTGGCAAAATATTGTAAGTTTAATCATTTTTATATACACT
TGCCTTTTCTACACTATACACGtaatttttggataattttgttATATGGA
CCGTCgctgttttcttgaaatttccaaaatttatttttacttgctttctt
ggaaaattaaatcgggacaattttttttaattttcgtgcTTTCTTCTTTC
AGATCCGAACGAAAAACGAATAACAGATAACATTGAAAATATGAAGACTT
TGATAAAAGACGGTNGATCCGAACGAAAAACGAATAACAGATAACATTGA
AAATATGAAGAGTTTGATAAAAGACGGTAGCAACAAACCGTTAGTAAAAC
CTAATGATAACAATTACAAGAAACTTTGTCGTGGTGAAAATCTTAGAAAT
ATGGTAAGATAATAAAGTCTTTcatcttaaaaaagaaattcagaaATCAT
TTAAGAGATTTGCTTCCTGAAGGCTTGTTCAAATTGAGAACATACTTAGA
TAGAGTCAAatgcaaactttgaaaatactGAAACCTTTCAGTAGCATTTT
TGCTGAACATCATCCGcatacaaaaaatttaattggtCCTTGATTTCTCA
CGTTTCAGACACAAAACGAGGAACTACAAATGGTGTGTTGGTTTAAAAAT
GATCAACCCATACTTCGTTATAAACCACAAAAAATTGAACGTCTTTGGGC
AAGACCAGAAATTTTGATGTTTAGAGAATTATTGAATGATGAAAAAATTG
GAACATTGATCAATCTCAGTCTTCAAAAGGTAACCcttaataccttaagg
gaactaattttttttattttttttgcgcCGAAAGAGAATTATTGAATGAT
GAGTAAATTGGAACAGTCATTGGCCATGGTATACAAAATGTGAGAATAGA
TGTGATTTAAcgccgggggtactagggttgcgagctgacgagccgcccga
ctttcgaactttggacccttaccgggactaaaaaggagaaaacaaaggaa
aattttgggaattttgcgactcttagcgggacaaatttgatcaaatttcc
aTCTTTCAGAAGGTAAAAAGTTGAAGTtgtcctatttttccgacccttag
tgggactgaaatttgattttctgatttttccgacacttagcgggactttg
gaagtccaaaaaaggtacccttaagggcgNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNccccccccccccggggatttTTGATGCTCCAGTAACGTGTTAAAAGGG
ATAGACGCAATTTTTGAAGGCAGACGACTCCTTTATGGTCCCTTTGATAC
ATTATTCTGACGTGCCTACTTTtgtgggattaaatttcgcggatatTCCA
AAGATTATAGTTAATTCCATAttcatattttaatttttttggcccATATT
GCTCCATAATAATCTAACaataattttattaatttttctaCCTATGTTTG
ATTTTAATATGGTTAGTGAATTTTATATCCAAATGTCGATTTGGActtaa
ttttattcattttttaaaatgCGTTAATAGCCCAAAACTAGCTGTAACAG
ATAATAACGGCAGAGCAATCCTAATGATCACAAGTATTCATCCTTTTTTT
CAGCCAAGCTCATAACTATATCCTTTTTGCTCGAACTTTATTGGTTTATA
GCTTCAAAGAGCTGGTTTACATGCAGAAACAAAAGATCAAAAACAATATG
ACGACTCCAGGACATCAAAGCACGCATGGTTATATCCAAAAGATATCCCT
TTGCTCAAACAAATGGAACGTCGTGTTCAAACAATGACCAATTTAGATAT
GAGATATGCAGGTAAGGTAgaatctctttaactcgaacctctataacttg
aatgcctccttaactcgaacaagttttatgccTTATTAGCCTTACTCCAA
AAAag

Coding sequence (CDS) from alignment at sc0000102:195340..202094+

>TCONS_00010071 ID=TCONS_00010071|Name=TCONS_00010071|organism=Clytia hemisphaerica|type=CDS|length=8547bp|location=Sequence derived from alignment at sc0000102:195340..202094+ (Clytia hemisphaerica)
AGCATGAAAAAGATAATCTGTACatccatcaaaatcattttatcaCTCGC
TTTTTATGTGAGGATTGCTTCAAGCAACGATGCTTTTACTTCGATACACG
ATATTAAACAAATTTTACGAAAAGAACAAGTACTTATCGAACAGCTAGAT
CTCTCTATCGAACAAGAGAAAGCAAGGATACGAAAAATTGAGCAGATGAG
AGATTCATTAAAGAAGAAAGTAGCTCCCATTACGAAAACTTCAATAGATG
AATATGTTGGGAATCCGTTGAATGCTTTGTATACGATAAGACGATTCAAT
AAAGACTGGCAAAGAGTTAAAGATGAACTAAATAATGAAGGATTCAACAA
AGTTTGGAACGACAAGCCTGAGTTACTACCAACAAATCAAGATCAAAAAG
GTGCAATTGGTGGAATACTGAGGTTGCAAAACTTCTACAAAATCACCGCA
CACAATATTTCAAAAGGAATACTACTGAACAATGACAGTGAAAAGAAACC
TGAAGAAATGGACCTTGGTTTGATTTGCACGATAGGAGACGAATCATTCA
AACAAGAAGATTGGTTTTTGATGAAAGAATGGCTTGATCTTGCATTAGAA
CGAATCGGAGATTCGGAGGAAAGGGATGGTTGTAAACGGATGTGGATTGT
CGACTTCTTATCGTATGTTGAATTTAAGCTTAATCACTTTGAAAGAGCAT
TGAAGTTAAATTACGAATTATTGGCAAAATATTATCCGAACGAAAAACGA
ATAACAGATAACATTGAAAATATGAAGAGTTTGATAAAAGACGGTAGCAA
CAAACCGTTAGTAAAACCTAATGATAACAATTACAAGAAACTTTGTCGTG
GTGAAAATCTTAGAAATATGACACAAAACGAGGAACTACAAATGGTGTGT
TGGTTTAAAAATGATCAACCCATACTTCGTTATAAACCACAAAAAATTGA
ACGTCTTTGGGCAAGACCAGAAATTTTGATGTTTAGAGAATTATTGAATG
ATGAAAAAATTGGAACATTGATCAATCTCAGTCTTCAAAAGCTTCAAAGA
GCTGGTTTACATGCAGAAACAAAAGATCAAAAACAATATGACGACTCCAG
GACATCAAAGCACGCATGGTTATATCCAAAAGATATCCCTTTGCTCAAAC
AAATGGAACGTCGTGTTCAAACAATGACCAATTTAGATATGAGATATGCA
GGTAAGGTAgaatctctttaaAGCATGAAAAAGATAATCTGTACatccat
caaaatcattttatcaCTCGCTTTTTATGTGAGGATTGCTTCAAGCAACG
ATGCTTTTACTTCGATACACGATATTAAACAAATTTTACGAAAAGAACAA
GTACTTATCGAACAGCTAGATCTCTCTATCGAACAAGAGAAAGCAAGGAT
ACGAAAAATTGAGCAGATGAGAGATTCATTAAAGAAGAAAGTAGCTCCCA
TTACGAAAACTTCAATAGATGAATATGTTGGGAATCCGTTGAATGCTTTG
TATACGATAAGACGATTCAATAAAGACTGGCAAAGAGTTAAAGATGAACT
AAATAATGAAGGATTCAACAAAGTTTGGAACGACAAGCCTGAGTTACTAC
CAACAAATCAAGATCAAAAAGGTGCAATTGGTGGAATACTGAGGTTGCAA
AACTTCTACAAAATCACCGCACACAATATTTCAAAAGGAATACTACTGAA
CAATGACAGTGAAAAGAAACCTGAAGAAATGGACCTTGGTTTGATTTGCA
CGATAGGAGACGAATCATTCAAACAAGAAGATTGGTTTTTGATGAAAGAA
TGGCTTGATCTTGCATTAGAACGAATCGGAGATTCGGAGGAAAGGGATGG
TTGTAAACGGATGTGGATTGTCGACTTCTTATCGTATGTTGAATTTAAGC
TTAATCACTTTGAAAGAGCATTGAAGTTAAATTACGAATTATTGGCAAAA
TATTATCCGAACGAAAAACGAATAACAGATAACATTGAAAATATGAAGAG
TTTGATAAAAGACGGTAGCAACAAACCGTTAGTAAAACCTAATGATAACA
ATTACAAGAAACTTTGTCGTGGTGAAAATCTTAGAAATATGACACAAAAC
GAGGAACTACAAATGGTGTGTTGGTTTAAAAATGATCAACCCATACTTCG
TTATAAACCACAAAAAATTGAACGTCTTTGGGCAAGACCAGAAATTTTGA
TGTTTAGAGAATTATTGAATGATGAAAAAATTGGAACATTGATCAATCTC
AGTCTTCAAAAGCTTCAAAGAGCTGGTTTACATGCAGAAACAAAAGATCA
AAAACAATATGACGACTCCAGGACATCAAAGCACGCATGGTTATATCCAA
AAGATATCCCTTTGCTCAAACAAATGGAACGTCGTGTTCAAACAATGACC
AATTTAGATATGAGATATGCAGGTAAGGTAgaatctctttaaAGCATGAA
AAAGATAATCTGTACatccatcaaaatcattttatcaCTCGCTTTTTATG
TGAGGATTGCTTCAAGCAACGATGCTTTTACTTCGATACACGATATTAAA
CAAATTTTACGAAAAGAACAAGTACTTATCGAACAGCTAGATCTCTCTAT
CGAACAAGAGAAAGCAAGGATACGAAAAATTGAGCAGATGAGAGATTCAT
TAAAGAAGAAAGTAGCTCCCATTACGAAAACTTCAATAGATGAATATGTT
GGGAATCCGTTGAATGCTTTGTATACGATAAGACGATTCAATAAAGACTG
GCAAAGAGTTAAAGATGAACTAAATAATGAAGGATTCAACAAAGTTTGGA
ACGACAAGCCTGAGTTACTACCAACAAATCAAGATCAAAAAGGTGCAATT
GGTGGAATACTGAGGTTGCAAAACTTCTACAAAATCACCGCACACAATAT
TTCAAAAGGAATACTACTGAACAATGACAGTGAAAAGAAACCTGAAGAAA
TGGACCTTGGTTTGATTTGCACGATAGGAGACGAATCATTCAAACAAGAA
GATTGGTTTTTGATGAAAGAATGGCTTGATCTTGCATTAGAACGAATCGG
AGATTCGGAGGAAAGGGATGGTTGTAAACGGATGTGGATTGTCGACTTCT
TATCGTATGTTGAATTTAAGCTTAATCACTTTGAAAGAGCATTGAAGTTA
AATTACGAATTATTGGCAAAATATTATCCGAACGAAAAACGAATAACAGA
TAACATTGAAAATATGAAGAGTTTGATAAAAGACGGTAGCAACAAACCGT
TAGTAAAACCTAATGATAACAATTACAAGAAACTTTGTCGTGGTGAAAAT
CTTAGAAATATGACACAAAACGAGGAACTACAAATGGTGTGTTGGTTTAA
AAATGATCAACCCATACTTCGTTATAAACCACAAAAAATTGAACGTCTTT
GGGCAAGACCAGAAATTTTGATGTTTAGAGAATTATTGAATGATGAAAAA
ATTGGAACATTGATCAATCTCAGTCTTCAAAAGCTTCAAAGAGCTGGTTT
ACATGCAGAAACAAAAGATCAAAAACAATATGACGACTCCAGGACATCAA
AGCACGCATGGTTATATCCAAAAGATATCCCTTTGCTCAAACAAATGGAA
CGTCGTGTTCAAACAATGACCAATTTAGATATGAGATATGCAGGTAAGGT
AgaatctctttaaAGCATGAAAAAGATAATCTGTACatccatcaaaatca
ttttatcaCTCGCTTTTTATGTGAGGATTGCTTCAAGCAACGATGCTTTT
ACTTCGATACACGATATTAAACAAATTTTACGAAAAGAACAAGTACTTAT
CGAACAGCTAGATCTCTCTATCGAACAAGAGAAAGCAAGGATACGAAAAA
TTGAGCAGATGAGAGATTCATTAAAGAAGAAAGTAGCTCCCATTACGAAA
ACTTCAATAGATGAATATGTTGGGAATCCGTTGAATGCTTTGTATACGAT
AAGACGATTCAATAAAGACTGGCAAAGAGTTAAAGATGAACTAAATAATG
AAGGATTCAACAAAGTTTGGAACGACAAGCCTGAGTTACTACCAACAAAT
CAAGATCAAAAAGGTGCAATTGGTGGAATACTGAGGTTGCAAAACTTCTA
CAAAATCACCGCACACAATATTTCAAAAGGAATACTACTGAACAATGACA
GTGAAAAGAAACCTGAAGAAATGGACCTTGGTTTGATTTGCACGATAGGA
GACGAATCATTCAAACAAGAAGATTGGTTTTTGATGAAAGAATGGCTTGA
TCTTGCATTAGAACGAATCGGAGATTCGGAGGAAAGGGATGGTTGTAAAC
GGATGTGGATTGTCGACTTCTTATCGTATGTTGAATTTAAGCTTAATCAC
TTTGAAAGAGCATTGAAGTTAAATTACGAATTATTGGCAAAATATTATCC
GAACGAAAAACGAATAACAGATAACATTGAAAATATGAAGAGTTTGATAA
AAGACGGTAGCAACAAACCGTTAGTAAAACCTAATGATAACAATTACAAG
AAACTTTGTCGTGGTGAAAATCTTAGAAATATGACACAAAACGAGGAACT
ACAAATGGTGTGTTGGTTTAAAAATGATCAACCCATACTTCGTTATAAAC
CACAAAAAATTGAACGTCTTTGGGCAAGACCAGAAATTTTGATGTTTAGA
GAATTATTGAATGATGAAAAAATTGGAACATTGATCAATCTCAGTCTTCA
AAAGCTTCAAAGAGCTGGTTTACATGCAGAAACAAAAGATCAAAAACAAT
ATGACGACTCCAGGACATCAAAGCACGCATGGTTATATCCAAAAGATATC
CCTTTGCTCAAACAAATGGAACGTCGTGTTCAAACAATGACCAATTTAGA
TATGAGATATGCAGGTAAGGTAgaatctctttaaAGCATGAAAAAGATAA
TCTGTACatccatcaaaatcattttatcaCTCGCTTTTTATGTGAGGATT
GCTTCAAGCAACGATGCTTTTACTTCGATACACGATATTAAACAAATTTT
ACGAAAAGAACAAGTACTTATCGAACAGCTAGATCTCTCTATCGAACAAG
AGAAAGCAAGGATACGAAAAATTGAGCAGATGAGAGATTCATTAAAGAAG
AAAGTAGCTCCCATTACGAAAACTTCAATAGATGAATATGTTGGGAATCC
GTTGAATGCTTTGTATACGATAAGACGATTCAATAAAGACTGGCAAAGAG
TTAAAGATGAACTAAATAATGAAGGATTCAACAAAGTTTGGAACGACAAG
CCTGAGTTACTACCAACAAATCAAGATCAAAAAGGTGCAATTGGTGGAAT
ACTGAGGTTGCAAAACTTCTACAAAATCACCGCACACAATATTTCAAAAG
GAATACTACTGAACAATGACAGTGAAAAGAAACCTGAAGAAATGGACCTT
GGTTTGATTTGCACGATAGGAGACGAATCATTCAAACAAGAAGATTGGTT
TTTGATGAAAGAATGGCTTGATCTTGCATTAGAACGAATCGGAGATTCGG
AGGAAAGGGATGGTTGTAAACGGATGTGGATTGTCGACTTCTTATCGTAT
GTTGAATTTAAGCTTAATCACTTTGAAAGAGCATTGAAGTTAAATTACGA
ATTATTGGCAAAATATTATCCGAACGAAAAACGAATAACAGATAACATTG
AAAATATGAAGAGTTTGATAAAAGACGGTAGCAACAAACCGTTAGTAAAA
CCTAATGATAACAATTACAAGAAACTTTGTCGTGGTGAAAATCTTAGAAA
TATGACACAAAACGAGGAACTACAAATGGTGTGTTGGTTTAAAAATGATC
AACCCATACTTCGTTATAAACCACAAAAAATTGAACGTCTTTGGGCAAGA
CCAGAAATTTTGATGTTTAGAGAATTATTGAATGATGAAAAAATTGGAAC
ATTGATCAATCTCAGTCTTCAAAAGCTTCAAAGAGCTGGTTTACATGCAG
AAACAAAAGATCAAAAACAATATGACGACTCCAGGACATCAAAGCACGCA
TGGTTATATCCAAAAGATATCCCTTTGCTCAAACAAATGGAACGTCGTGT
TCAAACAATGACCAATTTAGATATGAGATATGCAGGTAAGGTAgaatctc
tttaaAGCATGAAAAAGATAATCTGTACatccatcaaaatcattttatca
CTCGCTTTTTATGTGAGGATTGCTTCAAGCAACGATGCTTTTACTTCGAT
ACACGATATTAAACAAATTTTACGAAAAGAACAAGTACTTATCGAACAGC
TAGATCTCTCTATCGAACAAGAGAAAGCAAGGATACGAAAAATTGAGCAG
ATGAGAGATTCATTAAAGAAGAAAGTAGCTCCCATTACGAAAACTTCAAT
AGATGAATATGTTGGGAATCCGTTGAATGCTTTGTATACGATAAGACGAT
TCAATAAAGACTGGCAAAGAGTTAAAGATGAACTAAATAATGAAGGATTC
AACAAAGTTTGGAACGACAAGCCTGAGTTACTACCAACAAATCAAGATCA
AAAAGGTGCAATTGGTGGAATACTGAGGTTGCAAAACTTCTACAAAATCA
CCGCACACAATATTTCAAAAGGAATACTACTGAACAATGACAGTGAAAAG
AAACCTGAAGAAATGGACCTTGGTTTGATTTGCACGATAGGAGACGAATC
ATTCAAACAAGAAGATTGGTTTTTGATGAAAGAATGGCTTGATCTTGCAT
TAGAACGAATCGGAGATTCGGAGGAAAGGGATGGTTGTAAACGGATGTGG
ATTGTCGACTTCTTATCGTATGTTGAATTTAAGCTTAATCACTTTGAAAG
AGCATTGAAGTTAAATTACGAATTATTGGCAAAATATTATCCGAACGAAA
AACGAATAACAGATAACATTGAAAATATGAAGAGTTTGATAAAAGACGGT
AGCAACAAACCGTTAGTAAAACCTAATGATAACAATTACAAGAAACTTTG
TCGTGGTGAAAATCTTAGAAATATGACACAAAACGAGGAACTACAAATGG
TGTGTTGGTTTAAAAATGATCAACCCATACTTCGTTATAAACCACAAAAA
ATTGAACGTCTTTGGGCAAGACCAGAAATTTTGATGTTTAGAGAATTATT
GAATGATGAAAAAATTGGAACATTGATCAATCTCAGTCTTCAAAAGCTTC
AAAGAGCTGGTTTACATGCAGAAACAAAAGATCAAAAACAATATGACGAC
TCCAGGACATCAAAGCACGCATGGTTATATCCAAAAGATATCCCTTTGCT
CAAACAAATGGAACGTCGTGTTCAAACAATGACCAATTTAGATATGAGAT
ATGCAGGTAAGGTAgaatctctttaaAGCATGAAAAAGATAATCTGTACa
tccatcaaaatcattttatcaCTCGCTTTTTATGTGAGGATTGCTTCAAG
CAACGATGCTTTTACTTCGATACACGATATTAAACAAATTTTACGAAAAG
AACAAGTACTTATCGAACAGCTAGATCTCTCTATCGAACAAGAGAAAGCA
AGGATACGAAAAATTGAGCAGATGAGAGATTCATTAAAGAAGAAAGTAGC
TCCCATTACGAAAACTTCAATAGATGAATATGTTGGGAATCCGTTGAATG
CTTTGTATACGATAAGACGATTCAATAAAGACTGGCAAAGAGTTAAAGAT
GAACTAAATAATGAAGGATTCAACAAAGTTTGGAACGACAAGCCTGAGTT
ACTACCAACAAATCAAGATCAAAAAGGTGCAATTGGTGGAATACTGAGGT
TGCAAAACTTCTACAAAATCACCGCACACAATATTTCAAAAGGAATACTA
CTGAACAATGACAGTGAAAAGAAACCTGAAGAAATGGACCTTGGTTTGAT
TTGCACGATAGGAGACGAATCATTCAAACAAGAAGATTGGTTTTTGATGA
AAGAATGGCTTGATCTTGCATTAGAACGAATCGGAGATTCGGAGGAAAGG
GATGGTTGTAAACGGATGTGGATTGTCGACTTCTTATCGTATGTTGAATT
TAAGCTTAATCACTTTGAAAGAGCATTGAAGTTAAATTACGAATTATTGG
CAAAATATTATCCGAACGAAAAACGAATAACAGATAACATTGAAAATATG
AAGAGTTTGATAAAAGACGGTAGCAACAAACCGTTAGTAAAACCTAATGA
TAACAATTACAAGAAACTTTGTCGTGGTGAAAATCTTAGAAATATGACAC
AAAACGAGGAACTACAAATGGTGTGTTGGTTTAAAAATGATCAACCCATA
CTTCGTTATAAACCACAAAAAATTGAACGTCTTTGGGCAAGACCAGAAAT
TTTGATGTTTAGAGAATTATTGAATGATGAAAAAATTGGAACATTGATCA
ATCTCAGTCTTCAAAAGCTTCAAAGAGCTGGTTTACATGCAGAAACAAAA
GATCAAAAACAATATGACGACTCCAGGACATCAAAGCACGCATGGTTATA
TCCAAAAGATATCCCTTTGCTCAAACAAATGGAACGTCGTGTTCAAACAA
TGACCAATTTAGATATGAGATATGCAGGTAAGGTAgaatctctttaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005648	XLOC_005648	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00010071-protein	TCONS_00010071-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000102	supercontig	sc0000102:195340..202094 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.287505	0	0.0722423	0.175896	0.104219	0	0.0784956	0	0.0680727	0	0.0868676	12.9631	14.1634	0.0558045	0.119774	10.9341	11.8148	22.1567	19.7395	11.3685	8.8224	2.56612	2.61906	1.65822	2.06389	0.894247	0	0.218158	0.626867

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013547	Pro_4_hyd_alph_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0004656	procollagen-proline 4-dioxygenase activity
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005783	endoplasmic reticulum

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0004656	procollagen-proline 4-dioxygenase activity

Blast

[Close]

BLAST of TCONS_00010071 vs. Swiss-Prot (Human)
Match: P4HA2 (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.358e-36
Identity = 106/418 (25.36%), Postives = 201/418 (48.09%), Query Frame = 3

Query:   30 IKIILSLAFYVRIASSNDAFTSIHDIKQILRKEQVLIEQLDLSIEQEKARIRKIEQMRDSLKKKVAPITKTSIDE--YVGNPLNALYTIRRFNKDWQRVKDEL---NNEGFNKVWNDKPELLPTNQDQKGAIGGILRLQNFYKITAHNISKGILLNNDSEKKPEEMDLGLICTIGDESFKQEDWFLMKEWLDLALERIGDSEERDGCKRMWIVDFLSYVEFKLNHFERALKLNYELLAKYYPNEKRITDNIENMKSLIKDGSNKPLVK--------------------PNDNNYKKLCRGENLRNMTQNEELQMVCWFK--NDQPILRYKPQKIERLWARPEILMFRELLNDEKIGTLINLSLQKLQRAGLHAETKDQKQYDDSRTSKHAWLYPKDIPLLKQMERRVQTMTNLDMRYA 1202
            +  +L   F V      + FTSI  +  ++  E+ L++ L   I  E+A++ KI+   + ++   A  +K++ D   Y+ +P+NA   ++R N DW  ++D +   +  GF    + + +  PT++D+ GA   ++RLQ+ Y++    IS+G L      K    + +     +G  ++ + D++    W++  L+++   EE    K   ++D+LSY  F+L    RAL+L   LL+   P+ +R   N+   + L+++   K L                      P  + Y+ LCRGE ++ +T   + ++ C +   N  P L   P K E  W  P I+ + ++++DE+I  +  ++  KL RA +             R SK +WL   D P++ ++ RR+Q +T L ++ A
Sbjct:    5 VSALLMAWFGVLSCVQAEFFTSIGHMTDLIYAEKELVQSLKEYILVEEAKLSKIKSWANKME---ALTSKSAADAEGYLAHPVNAYKLVKRLNTDWPALEDLVLQDSAAGFIANLSVQRQFFPTDEDEIGAAKALMRLQDTYRLDPGTISRGELPGT---KYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATTTKSQ-VLDYLSYAVFQLGDLHRALELTRRLLS-LDPSHERAGGNLRYFEQLLEEEREKTLTNQTEAELATPEGIYERPVDYLPERDVYESLCRGEGVK-LTPRRQKRLFCRYHHGNRAPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTA 413

The following BLAST results are available for this feature:

BLAST of TCONS_00010071 vs. Swiss-Prot (Human)

BLAST of TCONS_00010071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
P4HA2	2.358e-36	25.36	Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapie...	[more]

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TCONS_00010071 (transcript) - C. hemisphaerica