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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010070 ID=TCONS_00010070|Name=TCONS_00010070|organism=Clytia hemisphaerica|type=transcript|length=936bp
GCAGCATGAAAAAGATAATCTGTACatccatcaaaatcattttatcaCTC
GCTTTTTATGTGAGGATTGCTTCAAGCAACGATGCTTTTACTTCGATACA
CGATATTAAACAAATTTTACGAAAAGAACAAGTACTTATCGAACAGCTAG
ATCTCTCTATCGAACAAGAGAAAGCAAGGATACGAAAAATTGAGCAGATG
AGAGATTCATTAAAGAAGAAAGTAGCTCCCATTACGAAAACTTCAATAGA
TGAATATGTTGGGAATCCGTTGAATGCTTTGTATACGATAAGACGATTCA
ATAAAGACTGGCAAAGAGTTAAAGATGAACTAAATAATGAAGGATTCAAC
AAAGTTTGGAACGACAAGCCTGAGTTACTACCAACAAATCAAGATCAAAA
AGGTGCAATTGGTGGAATACTGAGGTTGCAAAACTTCTACAAAATCACCG
CACACAATATTTCAAAAGGAATACTACTGAACAATGACAGTGAAAAGAAA
CCTGAAGAAATGGACCTTGGTTTGATTTGCACGATAGGAGACGAATCATT
CAAACAAGAAGATTGGTTTTTGATGAAAGAATGGCTTGATCTTGCATTAG
AACGAATCGGAGATTCGGAGGAAAGGGATGGTTGTAAACGGATGTGGATT
GTCGACTTCTTATCGTATGTTGAATTTAAGCTTAATCACTTTGAAAGAGC
ATTGAAGTTAAATTACGAATTATTGGCAAAATATTATCCGAACGAAAAAC
GAATAACAGATAACATTGAAAATATGAAGACTTTGATAAAAGACGGTNGA
TCCGAACGAAAAACGAATAACAGATAACATTGAAAATATGAAGAGTTTGA
TAAAAGACGGTAGCAACAAACCGTTAGTAAAACCTAATGATAACAATTAC
AAGAAACTTTGTCGTGGTGAAAATCTTAGAAATATG Run BLAST on NCBI transcript from alignment at sc0000102:195340..200492+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010070 ID=TCONS_00010070|Name=TCONS_00010070|organism=Clytia hemisphaerica|type=transcript|length=5153bp|location=Sequence derived from alignment at sc0000102:195340..200492+ (Clytia hemisphaerica)
GCAGCATGAAAAAGATAATCTGTACatccatcaaaatcattttatcaCTC
GCTTTTTATGTGAGGATTGCTTCAAGCAACGATGCTTTTACTTCGATACA
CGATATTAAACAAATTTTACGAAAAGAACAAGTACTTATCGAACAGCTAG
ATCTCTCTATCGAACAAGAGAAAGCAAGGATACGAAAAATTGAGCAGATG
AGAGATTCATTAAAGAAGAAAGTAGCTCCCATTACGAAAACTTCAATAGA
TGAATATGTTGGGAATCCGTTGAATGCTTTGTATACGATAAGACGATTCA
ATAAAGACTGGCAAAGAGTTAAAGATGAACTAAATAATGAAGGTATACCT
CTTATAAGAGGAACGAAAATGAAGAGACGGAACTATGCAAAAACATAGAA
TTCTCTCAACAGGGATaaaagcgagtttatgtatttgcaattttgaggac
ggtagagtgactgaagctaTTTGGAATTACCCgtagttttgacccgcaaa
gtcgaggacggtaaaagtaaCGATTTACAGTCGTCCAGTCATTCAAGATG
TAGACAGATTAGAACCTCatcgtctccgtcgcagaaacacacaatacata
aactcggtaatacaCCTATCAATACCCTTAACAGAGCGGTCGGCTTTTGA
GGGGTCTGGTAACGAATTTACAAGAATAATGACGTCACAATCCTTTGGCT
TTTAAATAGGCCAATACAATGACGTAATTCTTCCTGGTAAATTCGAACTT
AGTCCCTACATGATTTAAAGGTTGATAGGTGTATAGCCCGTCGGTCtact
tttttattcagtttaaAATACATATTATTCATATCATCATGAAGGATATG
CCAAAGGGTATTAACACGGGAATAGCTCGACAACCTCTATTTAGTAGCGA
ACCACTCCCAACTGAAGACTGAGGGCAATTTGAACAGGGGTGGATTTTTG
ATTGATCttccatagcaatattttgtaGTGTCAGATGCAAGACTGAGAGG
TTAGTGGGTTAAGAGATGCTAAGTTATTCTTTATATTATGACCATAGGGT
TTAGTACGAAGCCCGGCAAATGCCAATAAGAACAAAATACCACGACTACC
TGTCTACCACTATTGACCTTTACATACCCTGGATAAAGTTTCTCGATCCT
GGCCCCAGCAAAATCTTTattcggagttttttgaaaagtggtaccctaaa
gGTAGCACCAGTCAATGTGCAtggaaaaatttttgaacagaaaatttcat
tgaattacAAATTGACCCACATCGAtaagggtaccacttttcaaaaaact
cttaTCAAAGATGATgtatatagcttggtccagggtatataaaagTCCAG
TGTCTGCACACATATGCCTCATGGTGTCAAgataatgaaaaagaaatttt
ttgaaattctacaGATTTGTATTTACAGGATTCAACAAAGTTTGGAACGA
CAAGCCTGAGTTACTACCAACAAATCAAGATCAAAAAGGTGCAATTGGTG
GAATACTGAGGTTGCAAAACTTCTACAAAATCACCGCACACAATATTTCA
AAAGGTATTCCTCAACCTATCAAAATTGAATATTCTCACAATACAGGTAT
CTTTAATCATTTGGCCCTCATCGGTCCATTCCCCTGGTTGAGTTATACTC
ATTATGCCTTTGTGCCATTTATTTTCATGTCCTTAGCAATTTAAGAGAAT
AAGCGCGTGTAAAAAGATGAAACAAActagggagaaagagtggaTTGTGA
AATAGACTGTGAAATGGTAGAGGATGCTATTCGGCCGTTAAAGTGATAGT
AAACGCGGGGACATAATATATGTGAGGAAATTcatagaatttctgtccaa
ctatcttcgtccttattaggaatCGTCAGTACTGCATACTGCAACCTGGC
TCGATCGAATTGCCTAGCATTTCACGTCATACAACTAATTGTAGCGCAGA
CTGAAAGAAGAAGTGGAGCCAAGCTTTGAAGATTTGTAGTCGTAAATGGT
AGTATACGGAAAAGACAGCGGCGGTAGCATTTGGGGCAAACACTGCAGAC
ACTTCCGTCACTATTCACTCTACACAAAATTATCTTGGTTAATCCCTAAA
TTATTCGCTTTTTAGTGATCTCGTGTAGAAGATAGGATCATCTAGTGAAA
TGGAAGCCTTTAAACCATTGATAAATAAGACTTACTTACTATTATTTCAT
ACAGGAATACTACTGAACAATGACAGTGAAAAGAAACCTGAAGAAATGGA
CCTTGGTTTGATTTGCACGATAGGAGACGAATCATTCAAACAAGAAGATT
GGTTTTTGATGAAAGAATGGCTTGATCTTGCATTAGAACGAATCGGAGAT
TCGGAGGAAAGGGATGGTTGTAAACGGATGTGGATTGTCGACTTCTTATC
GTATGTTGAATTTAAGGTGAtttaacgttttttttataagaacgcaAGGC
TCAATTTTGTCCGAAATCTTAGCAGAaatactttaaccggattaaatttc
gcgagattaaatttcgcgagctaaaaaaatcgcgaaatttcgcgagtcag
agctttgaaatattttatctgatattccgatggcgtattggcggccgccc
acgctaaagctctaaaggagcggaccaatataccatcggagaggttTAGT
AGTAGccctttgatgtgccgacaaCAGTCGGGTTCAATGGCTATATCTTC
GCTTGCTCAAGAATTTTGTTCGTCCTGACTGAACAAAATTANGGTTGCAA
AACTTCTACAAAATCACCGCACACAATATTTCAAAAGGTATTCCTCAACC
TATCAAAATTGAATATTCTCACAATACAGGTATCTTTAATCATTTGGCCC
TCATCGGTCCATTCCCCTGGTTGAGTTATACTCATTATGCCTTTGTGCCA
TTTATTTTCATGTCCTTAGCAATTTAAGAGAATAAGCGCGTGTAAAAAGA
TGAAACAAActagggagaaagagtggaTTGTGAAATAGACTGTGAAATGG
TAGAGGATGCTATTCGGCCGTTAAAGTGATAGTAAACGCGGGGNTATAAA
TGTCTTTATACTTTCTTAGTATTACTTTTAGtattcagtgtaatttctgt
aaatgcaccaaccttttaaagattgttttttGCACAcaaatgttgaattt
tttttgtttgttttggtggactgatttttactgatttttctcAAATCCAA
ACTCAAAGATCATAAAGAAACAGTAACAGGTATGTTCCTTATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTGACCG
ACAACAGTCAAAGTCAGTCAAAGTCTCTAGCAGCAGTACAAATATGTGTA
CAAAACAGATAATTTTGTCTTCAGAAAGATCTACAGACTTCTGTATAGTT
AGTTTGTATCTTACTAACGATTAACCTCACTTTTTGTGTACCAACAGAAC
agcccaattttgtattttacagagcacattgaaaattcacttttgaggTC
CTGAAAACTATGAAGGTTAGTGTTATATTTATCGAGTTTGTCTAGGTAAG
TaggaaaaagcaataaattcatgttttaagtTGTATTTTCATGTAAATGA
AGCTAAATTAGGGACTGTTTATGTTTGTTTACTAGTACATGAATATGATT
CCGAACCATATCGAATATGGTGCTAATAGCAAATATGGTGCCAGCCTAGA
GAATATAACAAATCTGATGCGAATCagatttgttattattttctgcTTAG
CACTCGCATCCGATAGGAATTAGATGCTAACTTGTTATGTTGATCGTTTC
CAAGCTCCTCACAAAATGTTTAAACGCGGTcaagtcaaatcccgtaatgc
aaaccttccagatgttaaaatatgcccgacctttagagcaaagcgtgtcg
tagcatatttccacatctggtaccagataatgaaatatttcgcgtggatt
taatttcgcgaataagccagaaaacagctgaaaatagccaatttttgcca
taaatggagacttggaactagtttctccgccaaaaatacaattttaaaag
ttttgcggtggatttaatttcgcgaatcaggaatctcacgcgtgttCGCG
AGTTTTAATTTCGCGAAAATGGCAAAAATTCGCGAAATCGCGAAATTTAA
TCTCGTGAAAATTAATCCGATTAAAGTATAATCCATGCCAGATTTTAGAA
ATGACTAATGCTGAATGTAAGCTCTTCCAAGTCAATAGGTGAATAAAGTA
ATCATTTtgagaacatttaagcctgaaaatcacGTAACCTCGACCAAAAT
AACCACAGCTCCTTGTATTGTAGATAGCAGGAATTTTTTAGGGTTTTGGC
TAAGCAAGTTTCCATTTTTGTGTCCCAAGAGTATTATTTTTCTTGAGTTG
TAGATCAGTCGTAAAACTGACTGCTGGCATAGCAGAGTAAATCTCATGTT
TATCCCCCATATATAACCTGCACGGATCGGAAATACAAGAGCGTGGGAAA
CGTTCATTTGATTCCTTCATTTAAATATCAATATATTATTTCACAATTAA
TTCTTCAATTTGCTTTAGCTTAATCACTTTGAAAGAGCATTGAAGTTAAA
TTACGAATTATTGGCAAAATATTGTAAGTTTAATCATTTTTATATACACT
TGCCTTTTCTACACTATACACGtaatttttggataattttgttATATGGA
CCGTCgctgttttcttgaaatttccaaaatttatttttacttgctttctt
ggaaaattaaatcgggacaattttttttaattttcgtgcTTTCTTCTTTC
AGATCCGAACGAAAAACGAATAACAGATAACATTGAAAATATGAAGACTT
TGATAAAAGACGGTNGATCCGAACGAAAAACGAATAACAGATAACATTGA
AAATATGAAGAGTTTGATAAAAGACGGTAGCAACAAACCGTTAGTAAAAC
CTAATGATAACAATTACAAGAAACTTTGTCGTGGTGAAAATCTTAGAAAT
ATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010070-exon-sc0000102-1491911889:195340..195681 | TCONS_00010070-exon-sc0000102-1491911889:195340..195681 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1510915933:195340..195681 | TCONS_00010070-exon-sc0000102-1510915933:195340..195681 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1575043694:195340..195681 | TCONS_00010070-exon-sc0000102-1575043694:195340..195681 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1491911889:196768..196893 | TCONS_00010070-exon-sc0000102-1491911889:196768..196893 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1510915933:196768..196893 | TCONS_00010070-exon-sc0000102-1510915933:196768..196893 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1575043694:196768..196893 | TCONS_00010070-exon-sc0000102-1575043694:196768..196893 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1491911889:197544..197755 | TCONS_00010070-exon-sc0000102-1491911889:197544..197755 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1510915933:197544..197755 | TCONS_00010070-exon-sc0000102-1510915933:197544..197755 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1575043694:197544..197755 | TCONS_00010070-exon-sc0000102-1575043694:197544..197755 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1491911889:200058..200112 | TCONS_00010070-exon-sc0000102-1491911889:200058..200112 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1510915933:200058..200112 | TCONS_00010070-exon-sc0000102-1510915933:200058..200112 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1575043694:200058..200112 | TCONS_00010070-exon-sc0000102-1575043694:200058..200112 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1491911889:200292..200492 | TCONS_00010070-exon-sc0000102-1491911889:200292..200492 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1510915933:200292..200492 | TCONS_00010070-exon-sc0000102-1510915933:200292..200492 | Clytia hemisphaerica | exon |
| TCONS_00010070-exon-sc0000102-1575043694:200292..200492 | TCONS_00010070-exon-sc0000102-1575043694:200292..200492 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:195340..200492 + |
Blast
BLAST of TCONS_00010070 vs. Swiss-Prot (Human)
Match: P4HA2 (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 5.268e-21 Identity = 68/269 (25.28%), Postives = 135/269 (50.19%), Query Frame = 3
Query: 30 IKIILSLAFYVRIASSNDAFTSIHDIKQILRKEQVLIEQLDLSIEQEKARIRKIEQMRDSLKKKVAPITKTSIDE--YVGNPLNALYTIRRFNKDWQRVKDEL---NNEGFNKVWNDKPELLPTNQDQKGAIGGILRLQNFYKITAHNISKGILLNNDSEKKPEEMDLGLICTIGDESFKQEDWFLMKEWLDLALERIGDSEERDGCKRMWIVDFLSYVEFKLNHFERALKLNYELLAKYYPNEKRITDNIENMKTLIKDGXSERKTNN 821
+ +L F V + FTSI + ++ E+ L++ L I E+A++ KI+ + ++ A +K++ D Y+ +P+NA ++R N DW ++D + + GF + + + PT++D+ GA ++RLQ+ Y++ IS+G L K + + +G ++ + D++ W++ L+++ EE K ++D+LSY F+L RAL+L LL+ P+ +R N+ + L+++ + TN
Sbjct: 5 VSALLMAWFGVLSCVQAEFFTSIGHMTDLIYAEKELVQSLKEYILVEEAKLSKIKSWANKME---ALTSKSAADAEGYLAHPVNAYKLVKRLNTDWPALEDLVLQDSAAGFIANLSVQRQFFPTDEDEIGAAKALMRLQDTYRLDPGTISRGELPGT---KYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATTTKSQ-VLDYLSYAVFQLGDLHRALELTRRLLS-LDPSHERAGGNLRYFEQLLEEEREKTLTNQ 265
The following BLAST results are available for this feature:
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