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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010069 ID=TCONS_00010069|Name=TCONS_00010069|organism=Clytia hemisphaerica|type=transcript|length=4990bpRun BLAST on NCBI protein sequence of TCONS_00010069-protein >TCONS_00010069-protein ID=TCONS_00010069-protein|Name=TCONS_00010069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1541bp MRLILVVLVATLAVFTQAAYEAADKTCTPVELVWVVDSSGTITEEDHERSRun BLAST on NCBI transcript from alignment at sc0000102:173375..180995+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010069 ID=TCONS_00010069|Name=TCONS_00010069|organism=Clytia hemisphaerica|type=transcript|length=7621bp|location=Sequence derived from alignment at sc0000102:173375..180995+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000102:173375..180995+ >TCONS_00010069 ID=TCONS_00010069|Name=TCONS_00010069|organism=Clytia hemisphaerica|type=CDS|length=27756bp|location=Sequence derived from alignment at sc0000102:173375..180995+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010069 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 296.975 bits (759), Expect = 1.103e-80 Identity = 140/345 (40.58%), Postives = 185/345 (53.62%), Query Frame = 2
Query: 731 KVNGGWSIWGEFGECSTTCGEGHKIRYRKCNSPSPANGGKDCEGYPKNKVKCNVGYCPIDGYWGEWSDFSTCDKPCGNGTYYRTRKCIGKN--YGGEDCKGDATEYKDCRIKYCPIDGYWGEWSSFTTCDKTCGKGSHYRKRKCVG--QYYGGKYCDGKDTEYKDCRVAYCPIHGHWGKWSGFSTCSKTCGKGTRYRSRKCEG--QKYGGDYCPGKDEEYKDCHIKEYCAIDGYWGEWSDFSTCSKTCGKGDHYRTRKCIG--KNYGGKDCEGKDTHYKDCQIKYCPIDGYWGEWSSFSTCDKTCGKGTYYRTRKC---LGYKYDGKYCEGDDTYYEDCQIKYCP 1732
+V+GG+S W + CS TCG+G + R R CN P PANGGK C+G C CP+DG W EWS + C + CG G RTR C + +GG C+G+A E C I+ CP+ G W W + TC ++CGKG+ R R C +GG YCDG +T+ + C CPIHG W W+ +S CS +CG G R R+R C +YGG C G D + C+ + C G W WS + TCS+TC G R R C + GG+ C G D+ + C CP+DG WG W S+S C +CG G R R C + K G+ C GD T C ++ CP
Sbjct: 4527 QVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCN-SDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVK-GGRPCPGDTTQVTRCNVQACP 4869 HSP 2 Score: 272.322 bits (695), Expect = 3.743e-73 Identity = 134/347 (38.62%), Postives = 186/347 (53.60%), Query Frame = 2
Query: 1568 IDGYWGEWSSFSTCDKTCGKGTYYRTRKCLGY--KYDGKYCEGDDTYYEDCQIKYCPIDGYWGEWSDFSTCSKTCGKGNHYRTRKC--IAKKYGGKDCEGKDTHYEDCHIKEYCPIDGYWGEWSDFSTCSATCGKGKHYRKRECLG--QKYNGKYCEGDAEYYKDCQVKYCPVDGYWGSWSAYSKCSATCGKGTYYRYRKCEG--KKYGGKDCEGNDKHYADCDSGVYCPVGGKWSSWSAYSKCSKTCGIGEYYRTRTCEG--QKHGGKDCKGVDKQYSDCKTGVYCPVNGQWSSWSEEYSKCSVTCGKGTYYRTRKCEG--QQYGGDYCSGNSKYYADCDTGVHCP 2572
+ G + +WS++ C TCGKG R+R C GK C+G D +CQ K CP+DG W EWS + C+++CG+GN RTR C + ++GG+ CEG C+I+ CP+ G W W + TCS +CGKG R R C + G YC+G + C + CP+ G W +W+++S CS +CG G R R C +YGG+ CEG+D C+S CP G WS WS + CS+TC G+ R RTC+ +GG+ C G D Q C T + CPV+G W SW +S+CS +CG G R R C+ GG C G++ C+ CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRP-CPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDP-CPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSW-HSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQA-CP 4869 HSP 3 Score: 248.44 bits (633), Expect = 7.062e-66 Identity = 124/319 (38.87%), Postives = 168/319 (52.66%), Query Frame = 2
Query: 1733 IDGYWGEWSDFSTCSKTCGKGNHYRTRKCIAK--KYGGKDCEGKDTHYEDCHIKEYCPIDGYWGEWSDFSTCSATCGKGKHYRKRECLGQ--KYNGKYCEGDAEYYKDCQVKYCPVDGYWGSWSAYSKCSATCGKGTYYRYRKCEGK--KYGGKDCEGNDKHYADCDSGVYCPVGGKWSSWSAYSKCSKTCGIGEYYRTRTCEGQ--KHGGKDCKGVDKQYSDCKTGVYCPVNGQWSSWSEEYSKCSVTCGKGTYYRTRKCEGQ--QYGGDYCSGNSKYYADCDTGVHCPVDGYWGEWSSYSTCDKTCGKGSHYRYRKC 2659
+ G + +WS + CS TCGKG R+R C GGK C+G D +C K CP+DG W EWS + C+ +CG+G R R C ++ G+ CEG+A C ++ CPV G W +W + CS +CGKGT R R C +GG C+G + C+ CP+ GKW++W+++S CS +CG G RTR C ++GG+ C+G D Q C + CP +G WS WS + CS TC G R R C+ GG C G C+T + CPVDG WG W S+S C +CG G R R C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKP-CPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDP-CPTHGNWSPWSG-WGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLC 4841 HSP 4 Score: 247.284 bits (630), Expect = 1.809e-65 Identity = 114/291 (39.18%), Postives = 155/291 (53.26%), Query Frame = 2
Query: 722 KPTKVNGGWSIWGEFGECSTTCGEGHKIRYRKCNSPSPANGGKDCEGYPKNKVKCNVGYCPIDGYWGEWSDFSTCDKPCGNGTYYRTRKCIG--KNYGGEDCKGDATEYKDCRIKYCPIDGYWGEWSSFTTCDKTCGKGSHYRKRKC---VGQYYGGKYCDGKDTEYKDCRVAYCPIHGHWGKWSGFSTCSKTCGKGTRYRSRKCEG--QKYGGDYCPGKDEEYKDCHIKEYCAIDGYWGEWSDFSTCSKTCGKGDHYRTRKCIG--KNYGGKDCEGKDTHYKDCQIKYCP 1567
KP V+G WS W + EC+ +CG G++ R R CN+PS +GG+ CEG + CN+ CP+ G W W + TC + CG GT R R C +GG C G T+ + C + CPI G W W+S++ C +CG G+ R R C V Q YGG+ C+G D + C CP HG+W WSG+ TCS+TC G R R C+ GG C G D + + C+ + C +DG WG W +S CS +CG G+ R R C GG+ C G T C ++ CP
Sbjct: 4581 KPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQ-YGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCN-TDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 5 Score: 204.912 bits (520), Expect = 1.450e-52 Identity = 121/310 (39.03%), Postives = 155/310 (50.00%), Query Frame = 2
Query: 2066 VDGYWGSWSAYSKCSATCGKGTYYRYRKCEGK--KYGGKDCEGNDKHYADCDSGVYCPVGGKWSSWSAYSKCSKTCGIGEYYRTRTCEGQ--KHGGKDCKGVDKQYSDCKTGVYCPVNGQWSSWSEEYSKCSVTCGKGTYYRTRKCEGQ--QYGGDYCSGNSKYYADCDTGVHCPVDGYWGEWSSYSTCDKTCGKGSHYRYRKCVXXX-XXXXXXXXXXXXXXDCQIQSYCPVDGSWGQWSKYSTCSEPCGKGTHXXXXXXXXX--XXXXXXXXXXXXQYQDCHIKYCSVDGYWGEWSSYSTCDKTCGKG 2968
V G + WSA+ CS TCGKG R R C GGK C+G+D +C + CPV G WS WS + +C+++CG G RTRTC +HGG+ C+G + C CPV+G WS+W + + CS +CGKGT R R C +GG YC G C+ +CP+ G W W+S+S C +CG G+ R R C G D CP G+W WS + TCS C G RYR CD GG+ C G D Q Q C+ C VDG WG W S+S C +CG G
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKP-CPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRP-CPVHGAWSAW-QPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGG 4833 HSP 6 Score: 193.356 bits (490), Expect = 5.602e-49 Identity = 89/236 (37.71%), Postives = 118/236 (50.00%), Query Frame = 2
Query: 701 EAICGSVKPTKVNGGWSIWGEFGECSTTCGEGHKIRYRKCNSPSPANGGKDCEGYPKNKVKCNVGYCPIDGYWGEWSDFSTCDKPCGNGTYYRTRKCIG--KNYGGEDCKGDATEYKDCRIKYCPIDGYWGEWSSFTTCDKTCGKGSHYRKRKCVG--QYYGGKYCDGKDTEYKDCRVAYCPIHGHWGKWSGFSTCSKTCGKGTRYRSRKCEG--QKYGGDYCPGKDEEYKDCHIK 1390
E I +++P V+G WS W +G CS +CG+G + R R CN+P PA GG C+G CN CPI G W W+ +S C CG G RTR C YGG C+G + C CP G W WS + TC +TC G R R C GG+ C G D++ + C CP+ G WG W +S CS +CG G + R R C+ GG CPG + C+++
Sbjct: 4631 EIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQ 4866 HSP 7 Score: 172.555 bits (436), Expect = 1.036e-42 Identity = 116/316 (36.71%), Postives = 152/316 (48.10%), Query Frame = 2
Query: 2222 VYCPVGGKWSSWSAYSKCSKTCGIGEYYRTRTCEG--QKHGGKDCKGVDKQYSDCKTGVYCPVNGQWSSWSEEYSKCSVTCGKGTYYRTRKCEGQ--QYGGDYCSGNSKYYADCDTGVHCPVDGYWGEWSSYSTCDKTCGKGSHYRYRKCVXXXXXXXXXXXXXXXXXDCQIQ----SYCPVDGSWGQWSKYSTCSEPCGKGTHXXXXXXXXXXXXXXXXXXXXXQYQD--CHIKYCSVDGYWGEWSSYSTCDKTCGKGSHXXXXXXXX--XXXXXXXXXXXXXXXXXXHIKYCPNDGSWGQWSKYSTCSEPCGKG 3133
V V G +S WSA+ CS TCG G R+R C +GGK C+G D + +C+ CPV+G WS WS + +C+ +CG+G RTR C Q+GG C GN+ C+ CPV G W W + TC ++CGKG+ R R C + G + + Q+Q CP+ G W W+ +S CS CG G R R C Q C+ C G W WS + TC +TC G RYR CD GG+ CGG D + + C+ CP DGSWG W +S CS CG G
Sbjct: 4524 VIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKP-CPVDGSWSEWS-LWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLC---NNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGG 4833 HSP 8 Score: 156.762 bits (395), Expect = 6.087e-38 Identity = 116/314 (36.94%), Postives = 151/314 (48.09%), Query Frame = 2
Query: 2390 VYCPVNGQWSSWSEEYSKCSVTCGKGTYYRTRKCEGQ--QYGGDYCSGNSKYYADCDTGVHCPVDGYWGEWSSYSTCDKTCGKGSHYRYRKCVXXXXXXXXXXXXXXXXX--DCQIQSYCPVDGSWGQWSKYSTCSEPCGKGTHXXXXXXXXX--XXXXXXXXXXXXQYQDCHIKYCSVDGYWGEWSSYSTCDKTCGKGSHXXXXXXXXXXXXXXXXXXXXXXXXXXHIKY--CPNDGSWGQWSKYSTCSEPCGKGTHXXXXXXXXX--XXXXXXXXXXXXQYQDCQIKYCSVDGYWGEWSDFSTCDKTCGKGK 3301
V V+G +S WS + CSVTCGKG R+R C GG C G+ +C CPVDG W EWS + C ++CG+G+ R R C G +G + C I+ CPV G+W W + TCSE CGKGT R R C+ +GG C G + Q Q C+ + C + G W W+S+S C +CG G+ R R C + + + CP G+W WS + TCS C G RYR CD GG+ C G D Q Q C C VDG WG W +S C +CG G+
Sbjct: 4524 VIVQVHGGFSQWSA-WRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRP-CPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGE 4834 HSP 9 Score: 150.984 bits (380), Expect = 3.926e-36 Identity = 117/362 (32.32%), Postives = 165/362 (45.58%), Query Frame = 2
Query: 3236 VDGYWGEWSDFSTCDKTCGKGKHXXXXXXXXXXXXXXXXAGXHXXXXXXXXXXXXXXXXXXXXXQYQDCHIKYCSVDGYWGEWSSYSTCDKTCGKGSHXXXXXXXXXXXXXXXXXXXXXXXX--XXHIKYCPNDGSWGQWSKYSTCSEPCGKGTHXXXXXXXXX--XXXXXXXXXXXXQYQDCQIKYCSVDGYWGEWSDFSTCDKTCGKGKHXXXXXXXXXXXXXXXXXXXXXEYK-DCHIKEYCPTHGSWGQWSKYSTCDKKCGKGH--RYRQRXXXXXXXXXXXXXXNHTQYTDCEIKKCSVDGTWGAWSGYSECSKTCGKGVQIKSRKC---IGRKDGGKKCVGSATDSKECILKKCQG 4291
V G + +WS + C TCGKG R R C+ C G D + ++C K C VDG W EWS + C ++CG+G+ R R C+ + + C+I+ CP G+W W + TCSE CGKGT R R C+ +GG C G + Q Q C + C + G W W+ +S C +CG G R R C + + + D + CPTHG+W WS + TC + C G RYR +GG+ C G +Q C C VDG+WG+W +S+CS +CG G + + R C + K GG+ C G T C ++ C G
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKP------------------CQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVK-GGRPCPGDTTQVTRCNVQACPG 4870 HSP 10 Score: 128.257 bits (321), Expect = 3.107e-29 Identity = 112/325 (34.46%), Postives = 150/325 (46.15%), Query Frame = 2
Query: 2573 VDGYWGEWSSYSTCDKTCGKGSHYRYRKCVXX--XXXXXXXXXXXXXXXDCQIQSYCPVDGSWGQWSKYSTCSEPCGKG--THXXXXXXXXXXXXXXXXXXXXXQYQDCHIKYCSVDGYWGEWSSYSTCDKTCGKGSHXXXXXXXXX--XXXXXXXXXXXXXXXXXHIKYCPNDGSWGQWSKYSTCSEPCGKGTHXXXXXXXXXXXXXXXXXXXXXQYQD--CQIKYCSVDGYWGEWSDFSTCDKTCGKGKHXXXXXXXXXXXXXXXXAGXHXXXXXXXXXXXXXXXXXXXXXQYQDCHIKYCSVDGYWGEWSSYSTCDKTCGKG 3523
V G + +WS++ C TCGKG R R C +GGK C+G E ++CQ + CPVDGSW +WS + C+ CG+G T R ++GG+ C G + C+I+ C V G W W + TC ++CGKG+ R R C+ +GG C G + + + C+ + CP G W W+ +S CS CG G R R C Q C C G W WS + TC +TC G+ RYR CD A C G D Q Q C+ C VDG WG W S+S C +CG G
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKP-CPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRA------------------CGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGG 4833 The following BLAST results are available for this feature:
BLAST of TCONS_00010069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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