|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010067 ID=TCONS_00010067|Name=TCONS_00010067|organism=Clytia hemisphaerica|type=transcript|length=1685bp
CAAAGGAACACACTACAGAACAAGAACTTGCATTGGAACAGCTCACGGTG
GCAAAGAATGCATCGGAGAAACCAAACAATCAGGTGTTTGTGACACCAAA
GTTAAGTGTCCAGTTGATGGATACTGGTCTCAATGGTCAGCATACGGACA
ATGTAGCGAAACCTGTGGCAAAGGAACTCAATACAGAACAAGAACTTGCG
TTGGACCAGCACATGGTGGTAAAGATTGTGTTGGAGAATCAAAACAATCC
TCAGTCTGTGATACCAAAAAGAAATGCCCAGAACATGGATATTGGTCCAA
CTGGTCTGAATACAGTGATTGCAGTGCCGATTGTGGCAAAGGAACCCAAT
TCAGAACTCGAGTCTGTGAAGGACGAAAACACGGTGGCGACGACTGCGAA
GGAAAAGCCAAAGAAACTCGAGTTTGCGACACCAAGAAACACTGCCCAGT
TGATGGTAAATGGTCTCAATGGTCAGAATACAGCGAGTGCAGTGTTACCT
GTGGAAACGGTAAACAATACAGAACAAGAACATGCGAAGGAAAGAAACAC
GGCGGCAAAAACTGTGTTGGAGAagacaaagaagaaaagaaatgtGAACT
TGAAGCATGTCTCCCTGAACCATACTGGGCCCAATGGGGTGCATGGTCAT
CATGCAGCAACTCTTGTGGTAAAGGAACTCAAACTCGAGCCAGAATTTGT
ATGAAAGATCCACGACAAGTTACAACCTGTGTTGGTGCTCCAACTCAAAC
ACAATCATGCCAATTGAAACCATGTCAACAAACACCTGTCTGTACTTGCC
AGAAATACAAATTGGAACAATTTACTTGCCTCAAATGGGACAAAgcagaa
attgaaaaacaatttgaaggaaaatgcTTCCTCGATAAAGCCAGATTGGC
ATACAAGGCTGTCGAGAAATTGTTGACCGAACTTCGACAAGATATGGCTG
ATACCAGAAAATGCAGATTGGATCTCCGAAAACAACTCATATATGGAAGC
ACTGAAATCTTCACCGCTTACGATCACTGTGTCACTTTGGGCTCATGCAA
GTTCATCCGATTGAGAGAACAACTTGAAGATAAACTCTTTGAATTGAAAC
GACTCATCAGCACTGAAGAAGAAGGCTTCGGATCATTGAATCCATTGAGA
TTACTCGGATGGTAAACTTCGAAAGAACGAAGAACGATCAACGATCAACG
AATcgctaaaaaagaaaataaatcaagaCCTTCaagaagcaaaacaaaaa
acattcgaatttgagATCTACAATCGAATATGATCTAACGAACATGGTTG
ATCCGAGTTCGTTAAAGAtgaaaaagttacaaatttagtgaaattaaaat
tttattatcaattatcaattttattatACCACACACatcaaatgttttat
tttatagtttttttgttttataaaatgacaattgttCTCCTAGGGAACTA
CTTTATTTGTTTATCCTTATAATTTATatttattgaaattaaaaaaaaat
cgaaaaaaaccaATTCTCAGACCTTTTTTCTTCAGTACCGAAATGTCTAT
TGAATTTGTCAATGTCATAATGTTTTAAAGGATAATTTGTATTAATTTGA
ATATATTAAGTGGGCCCTTTTAATGCTCCTTAATGTTTTGAAAGATAACT
CTACATAAATGGAATATATTTGATATATAAACCCT Run BLAST on NCBI transcript from alignment at sc0000102:158324..162777+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010067 ID=TCONS_00010067|Name=TCONS_00010067|organism=Clytia hemisphaerica|type=transcript|length=4454bp|location=Sequence derived from alignment at sc0000102:158324..162777+ (Clytia hemisphaerica)
CAAAGGAACACACTACAGAACAAGAACTTGCATTGGAACAGCTCATGGTG
GCAAAGTCTGTGAAGGAGAATCCAAACAATCAGGAGTTTGTGACACCAAA
GTACACTGTCCATCTGATGGTGCATGGGGAAGCTGGTCATCCTACAGCAA
ATGTAGTGTCTCATGCGACAAAGGAACACACTACAGAACCAGAACTTGCG
TCGGAAAGAAACACGGTGGAAAAGACTGCGTCGGAGAAGACAAAGAAACC
GGAATTTGTGACACCAAAGTACCTTGCCCGGTCAACGGATATTGGTCAAG
CTGGTCATCTTATGGAGAATGTAGCGTTTCTTGTGGTGTAGGAACACACT
ACAGAACAAGAACATGTATTGGAGCAGCACATGGTGGCAAATTCTGTGTT
GGAGAATCCAAACAATCAGGTGAATGTGACACCAAAGTACATTGTCCATC
TGATGGTGTATGGGGAAGCTGGTCTAAATATGGAGAATGCAGTGTCACTT
GTGGCAAAGGAACACATATCCGTTCAAGAACTTGTATTGGAAAGAAACAC
GGTGGAAAAGACTGTGTTGGAAACTCCCAAGAATCTGGCATCTGTAACAC
CAACGTTTTCTGTGGAGGTAAGTTTATCGTTTATGgatatttcaattaat
tttataACTGGTTGCAAAAACATCTTTTTATTAAGCACGTTTTAAGAATA
CTTTGAATTTTATTGTACAGACAACGTAAATCTGAAAACCTCTTTTACGA
ATCTAGACAATAATCAAATACTGTTCTTCTAATATAGAATCTGTCGCCGG
AGGCTGGGGAGAATGGAGTGAATATGGACCATGTAGTAAAAACTGCAAAG
GAGGATACCAAACAAGACATCGTTACTGCAACAACCCTAAACCAAAGAAT
GGTGGAAAATACTGTGTCGGTGATGGTTACGAAAGTAAATCTTGTGGAGG
TGACGGCTACTGTCCAATTGATGGTTACTGGGCACAATGGTCTTCATACA
CTGCTTGCTCCAAGACTTGTGGAGAAGGACGTCAATCAAGAACACGTAAA
TGTAACCCACCTCAACACGGAGGAAAGAAATGTATTGGTCTTGATGAGGA
GGAACGAAAATGTACCGTCCGTGGATGTAAATGTAAGTATATGAAAATAG
TTTTAACGTCGAATTCAGTAGGAAATAATCAGCTTCTCAATGCTACAAAG
AACAGGTCATATCTCCAACCAACTTGCCTCAGAATTTAGATTCCTAAATT
CATAAGTGCTAAAGTAATAATATATAAAACAGTTTaataatcaatttcaa
ttttaaatttcagctgatGGCAAATGGTCGCAATGGTCATCTTATGGTCA
ATGCAGCGTCTCTTGTGCCAAAGGAACACAAATGCGAACAAGAACCTGTG
TAGGACAAGCTAATGGAGGTAAAGGCTGTAAtggaaaagataaacaaact
cgAGTTTGTGATACCAAAGTCCAATGCGCAGTTGATGGATATTGGTCACA
ATGGTCTTCATATGGTGAATGCAGTGTCACTTGTGAAAAAGGAACACACT
ACAGAACCAGAACCTGTGTAGGAAAGAAACACGGTGGAAAAGATTGTGAA
GGAGAATCAAAACAATCTGGAGTTTGTGACACCAAAGTTCATTGCCCATC
TGATGGTGCATGGGGAAGCTGGTCTTCATATGGTGAATGCAGCGTCACTT
GTGGCAAAGGAACACACTACAGAACCAGAACTTGCGTCGGAAAGAAACAC
GGTGGTAAAGATTGCGTCGGAGAAACCAAACAATCAGGAGTTTGTGACAC
CAAAATTAAGTGTCCAGTTGATGGATACTGGTCTCAATGGTCAGCATTCG
GACAATGTAGCGAAACATGTGGCAAAGGAACTCAATACAGAAAAAGAACT
TGCATTGGACAAGCACATGGTGGCAAAGATTGTGTTGGAGAATCAAAACA
ATCCTCAGTCTGTGATACCAAAAAGAAATGCCCAGAACATGGTTATTGGT
CCAACTGGTCTGAATACAGCGATTGCAGTGTAACTTGCGCCAAAGGAACT
CAATTCAGAACAAGAATCTGCGAAGGACAAAAACATGGAGGAGATAAATG
CGAAGGGGAAGCCAAAGAAACTCGAGTTTGTGACACTGAAGTATACTGTC
CAGTTGATGGTGAATGGTCTCAATGGTCTTCATATGGAGAATGCAGTGTC
ACGTGTGAAAAAGGAACACACTACAGAACAAGAACCTGTGTCGGAAAGAA
ACACGGTGGAAAAGATTGTGAAGGAGAATCAAAACAATCAGGAGTTTGTG
ACACCAAAGTTCATTGCCCATCTGATGGTGCATGGGGAAGCTGGTCTTCA
TATGGTGAATGCAGCGTCACTTGTGGCAAAGGAACACACTACAGAACCAG
AGCTTGCGTCGGAAAGAAACACGGTGGCAAAGAATGCATCGGAGAAACCA
AACAATCAGGTGTTTGTGACACCAAAGTTAAGTGTCCAGTTGATGGATAC
TGGTCTCAATGGTCAGCATACGGACAATGTAGCGAAACCTGTGGCAAAGG
AACTCAATACAGAACAAGAACTTGCGTTGGACCAGCACATGGTGGTAAAG
ATTGTGTTGGAGAATCAAAACAATCCTCAGTCTGTGATACCAAAAAGAAA
TGCCCAGAACATGGATATTGGTCCAACTGGTCTGAATACAGTGATTGCAG
TGCCGATTGTGGCAAAGGAACCCAATTCAGAACTCGAGTCTGTGAAGGAC
GAAAACACGGTGGCGACGACTGCGAAGGAAAAGCCAAAGAAACTCGAGTT
TGCGACACCAAGAAACACTGCCCAGTTGATGGTAAATGGTCTCAATGGTC
AGAATACAGCGAGTGCAGTGTTACCTGTGGAAACGGTAAACAATACAGAA
CAAGAACATGCGAAGGAAAGAAACACGGCGGCAAAAACTGTGTTGGAGAa
gacaaagaagaaaagaaatgtGAACTTGAAGCATGTCTCCCTGAACCATA
CTGGGCCCAATGGGGTGCATGGTCATCATGCAGCAACTCTTGTGGTAAAG
GAACTCAAACTCGAGCCAGAATTTGTATGAAAGATCCACGACAAGTTACA
ACCTGTGTTGGTGCTCCAACTCAAACACAATCATGCCAATTGAAACCATG
TCAACAAACACCTGTCTGTACTTGCCAGAAATACAAATTGGAACAATTTA
CTTGCCTCAAATGGGACAAAgcagaaattgaaaaacaatttgaagGTAAG
AATTCAATGTTAATCTTAAATTATTCATTCCGTTgaatttctttgaaatg
aaaagCGAAAACATTCAATCTAACCAAAGCTAAATCATTATATCTTGTAA
TTGATCTTCTTCCAGCTCCACATTTCTtataatatttcactttttctcat
ttttcaggaaaatgcTTCCTCGATAAAGCCAGATTGGCATACAAGGCTGT
CGAGAAATTGTTGACCGAACTTCGACAAGATATGGCTGATACCAGAAAAT
GCAGATTGGATCTCCGAAAACAACTCATATATGGAAGCACTGAAATCTTC
ACCGCTTACGATCACTGTGTCACTTTGGGCTCATGCAAGTTCATCCGATT
GAGAGAACAACTTGAAGATAAACTCTTTGAATTGAAACGACTCATCAGCA
CTGAAGAAGAAGGCTTCGGATCATTGAATCGTAAGTACTTCTTAGTATAT
CACTTATCATTGAGTTGAAAACTTAGTTGATTGCACACGAGCCCAAACTT
GTTTTTATCGACAGAATCTTGAAATAATGAACGGGTATTGCTAAGGCAGA
AAACTCTCATAAAAAGTCCTCATTTTGCAGAGGATTCGTAAATCGATTAT
TTTCTGCTATATCTTAAAAGTAATTAACAATCAATGACcaatcatttcat
tttatttacagCATTGAGATTACTCGGATGGTAAACTTCGAAAGAACGAA
GAACGATCAACGATCAACGAATcgctaaaaaagaaaataaatcaagaCCT
TCaagaagcaaaacaaaaaacattcgaatttgagATCTACAATCGAATAT
GATCTAACGAACATGGTTGATCCGAGTTCGTTAAAGAtgaaaaagttaca
aatttagtgaaattaaaattttattatcaattatcaattttattatACCA
CACACatcaaatgttttattttatagtttttttgttttataaaatgacaa
ttgttCTCCTAGGGAACTACTTTATTTGTTTATCCTTATAATTTATattt
attgaaattaaaaaaaaatcgaaaaaaaccaATTCTCAGACCTTTTTTCT
TCAGTACCGAAATGTCTATTGAATTTGTCAATGTCATAATGTTTTAAAGG
ATAATTTGTATTAATTTGAATATATTAAGTGGGCCCTTTTAATGCTCCTT
AATGTTTTGAAAGATAACTCTACATAAATGGAATATATTTGATATATAAA
CCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010067-exon-sc0000102-1491911889:158324..158367 | TCONS_00010067-exon-sc0000102-1491911889:158324..158367 | Clytia hemisphaerica | exon |
| TCONS_00010067-exon-sc0000102-1510915933:158324..158367 | TCONS_00010067-exon-sc0000102-1510915933:158324..158367 | Clytia hemisphaerica | exon |
| TCONS_00010067-exon-sc0000102-1575043694:158324..158367 | TCONS_00010067-exon-sc0000102-1575043694:158324..158367 | Clytia hemisphaerica | exon |
| TCONS_00010067-exon-sc0000102-1491911889:160744..161568 | TCONS_00010067-exon-sc0000102-1491911889:160744..161568 | Clytia hemisphaerica | exon |
| TCONS_00010067-exon-sc0000102-1510915933:160744..161568 | TCONS_00010067-exon-sc0000102-1510915933:160744..161568 | Clytia hemisphaerica | exon |
| TCONS_00010067-exon-sc0000102-1575043694:160744..161568 | TCONS_00010067-exon-sc0000102-1575043694:160744..161568 | Clytia hemisphaerica | exon |
| TCONS_00010067-exon-sc0000102-1491911889:161731..162003 | TCONS_00010067-exon-sc0000102-1491911889:161731..162003 | Clytia hemisphaerica | exon |
| TCONS_00010067-exon-sc0000102-1510915933:161731..162003 | TCONS_00010067-exon-sc0000102-1510915933:161731..162003 | Clytia hemisphaerica | exon |
| TCONS_00010067-exon-sc0000102-1575043694:161731..162003 | TCONS_00010067-exon-sc0000102-1575043694:161731..162003 | Clytia hemisphaerica | exon |
| TCONS_00010067-exon-sc0000102-1491911889:162235..162777 | TCONS_00010067-exon-sc0000102-1491911889:162235..162777 | Clytia hemisphaerica | exon |
| TCONS_00010067-exon-sc0000102-1510915933:162235..162777 | TCONS_00010067-exon-sc0000102-1510915933:162235..162777 | Clytia hemisphaerica | exon |
| TCONS_00010067-exon-sc0000102-1575043694:162235..162777 | TCONS_00010067-exon-sc0000102-1575043694:162235..162777 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:158324..162777 + |
Blast
BLAST of TCONS_00010067 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 171.785 bits (434), Expect = 1.983e-44 Identity = 104/268 (38.81%), Postives = 144/268 (53.73%), Query Frame = 2
Query: 2 KGTHYRTRTC--IGTAHGGKECIGETKQSGVCDTKVKCPVDGYWSQWSAYGQCSETCGKGTQYRTRTCVGPA--HGGKDCVGESKQSSVCDTKKKCPEHGYWSNWSEYSDCSADCGKGTQFRTRVCEGRK--HGGDDCEGKAKETRVCDTKKHCPVDGKWSQWSEYSECSVTCGNGKQYRTRTCEG--KKHGGKNCVGXXXXXXXXXXXXXXXXPYWAQWGAWSSCSNSCGKGTQTRARICMKDPRQV--TTCVGAPTQTQSCQLKPC 775
KG R+R C A+GGK C G + C K CPVDG WS+WS + +C+ +CG+G Q RTRTC P+ HGG+ C G + + +C+ + CP HG WS W + CS CGKGTQ R R+C GG C+G + +VC+ +++CP+ GKW+ W+ +S CSV+CG G + RTR C ++GG+ C G D + C + C W+ W W +CS +C G R R C P C G +Q Q C C
Sbjct: 4547 KGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNI-RPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCN-ERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 2 Score: 169.474 bits (428), Expect = 1.205e-43 Identity = 109/273 (39.93%), Postives = 146/273 (53.48%), Query Frame = 2
Query: 2 KGTHYRTRTCIGTA--HGGKECIGETKQSGVCDTKVKCPVDGYWSQWSAYGQCSETCGKGTQYRTRTCVGP--AHGGKDCVGESKQSSVCDTKKKCPEHGYWSNWSEYSDCSADCGKGTQFRTRVCEGR--KHGGDDCEGKAKETRVCDTKKHCPVDGKWSQWSEYSECSVTCGNGKQYRTRTCEGKK--HGGKNCVGXXXXXXXXXXXXXXXXPYWAQWGAWSSCSNSCGKGTQTRARICMKDPRQVT---TCVGAPTQTQSCQLKPCQQTP 787
+G RTRTC + HGG+ C G + +C+ + CPV G WS W +G CSE+CGKGTQ R R C P A GG C G Q VC+ ++ CP HG W+ W+ +S CS CG G + RTR C ++GG CEG ++ C++ CP G WS WS + CS TC G+ R RTC+ +GG+ C G D + ++C + C + W W +WS CS SCG G +TR R+C P V C G TQ C ++ C P
Sbjct: 4604 RGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCN-ERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDP-CPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLC-DHPVPVKGGRPCPGDTTQVTRCNVQACPGGP 4872 HSP 3 Score: 150.599 bits (379), Expect = 9.304e-38 Identity = 99/249 (39.76%), Postives = 123/249 (49.40%), Query Frame = 2
Query: 56 ECIGETKQSGV-CDTKVKCPVDGYWSQWSAYGQCSETCGKGTQYRTRTC--VGPAHGGKDCVGESKQSSVCDTKKKCPEHGYWSNWSEYSDCSADCGKGTQFRTRVCEGR--KHGGDDCEGKAKETRVCDTKKHCPVDGKWSQWSEYSECSVTCGNGKQYRTRTCEGKK--HGGKNCVGXXXXXXXXXXXXXXXXPYWAQWGAWSSCSNSCGKGTQTRARICMKDPRQV--TTCVGAPTQTQSCQLKPC 775
EC+ V V V G +SQWSA+ CS TCGKG Q R+R C PA+GGK C G + C K CP G WS WS + +C+ CG+G Q RTR C +HGG CEG A E +C+ + CPV G WS W + CS +CG G Q R R C GG C G + + + C C WA W +WS+CS SCG G + R R C Q C G+ Q+ C PC
Sbjct: 4508 ECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRP-CPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754
The following BLAST results are available for this feature:
|
