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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010053 ID=TCONS_00010053|Name=TCONS_00010053|organism=Clytia hemisphaerica|type=transcript|length=1896bp
AGCGATTGGAATTGGAAAACTGTTTTTTGTAAGTGCAAATTGTTTTGTTG
GTTGAATATCTCCTAATCTTTGTATATCAAGAACAAAAATATGGCAGCGA
AACATGGGACCGATCAAATCTACATCGGTGAAGCTTACCTTAAGTCTGAA
GAAGCAATAACAAAAGGTTTTACTATTGAAGATGTGAACGCGAGAAGAGA
TATCGTTTTAGATGTGGCACATTTTGAACCTAAATTGACCTGTTTTGATG
ACAATAAGCATCCTAAAACTTTCATAGAGGATATGGTTTATCGTTTGGAT
AGTTACGTCTGGCGTGACCCTGATCTAGAAACTAGCCAAATGGCTTTAAG
TCACACAAAATCCCTTATCGAGCTTCTATTCGGATATGTACGTGCTAATT
GGGTATATGGAAGTTATATAAAGGATGATGTTGACTTGATTGAAACTGGC
agctatttttcaaatttgagggTTGGTCTACCTTTTGAGTTCGACTTCAT
GTTTGATATAACGGATATTTTATCACCAGCCTACGAAATCGTTCAAGTTG
AAGATGACAAAGAGCGGAATTTCATCAGCGAGAGGCCGGAATTGCGTGAA
AATATTTACTATTGTATCAGATTAAAGGACGACTGTGCATTCACAAAATG
TTCTACTATCGGCATGTTATTTCATGTTGAGGAGTTTTGCGAATCACTAC
ACAAAGCCTTTGAAGATGCAATAAAGTTTTGTAAATATGAAGGATGGGAT
ATATTTGATTGGTCATCGCCCAAAACCTCCCCAGCATTTTCATTCTCCAT
GTTTTATGATGAAACTGGCATTTTAGTTGATCTAGTACCTTGTTTCAGAA
TCGAAGCAACAGATGTATACAATCTGccgaaaattaattcaagattGAAC
ACATTCTTCACTGAGAACCAATGGGGTTCAAGTACCTCTCATGATGATGA
CAAAGGCTCTGCTTATGATACTCAACCCCTTTACTTAATTTGCTGTGATG
TTGATTTTAAACAGAGTTCGGGGTTCAATCGTTATGCCGAAATCTATAAG
GGATGCACATTCAGATTGTCCTTATCATTATTCGAAAAGCATTTCTATCG
CCGTTTAGATTCAAACATATCGTCTGCTTTACGcgtttttaaatatcttt
tccAGACTTTTCCGTCAACGCTTGGCGATTGTAATGGTGTTTGGGATAAA
GAAAAGAACaccaaattgaaaaaaaaatttgataaacaagCAAAGGCTGA
TTTGAAGAAGCATAAAAACAGAATACGGAACAATAAATATGGAGACGAAC
AAGATCCAATGGTTACATTCGGATGCAAATCATCAATACCTAGTTATTTC
TTCACCAACTTCTTTTTGAAGCTTCTTTCAACTGGAGAATTTATTCAGCT
ATGGAAAGGTTACGGTCCCGGTGATATTTTTCTACAGCTTTTCTCGTATC
TTTTAAAACTGTTAGAAACGATACCTTCAGACCCGTTTCAGTACACAGAA
CATTCGCCCACCGTTTATCACCATGTTGCAGTGGgtagttggtttttcga
agatagATCATTTGCAAGCAAAGAAGTCTCCTTGACCGATGATCAAATAT
TTGGTCTTCGATCCTGGTTGCATGCTATCGTATTTGTTTTATCTGATCCG
AGTAGTACGTCTGAAATATACGCCAATTTTCCCTTACGTTGTATATTACC
TCGAGTTGAATGTTTGAGTTGCAAGAAACATTATTTCATCTTGAACGACG
ATATTCCACATTTAAATATCGAGGAAGATGAAATATATCGATGTCACATT
CATAGATTAGCTGCCTCCTCAATTCCAATTGGTTTTAATCATGTGGATTG
GGATGATGTTTGGCCTGGCTTGTCTAAAtattgttcaaactgaaaa Run BLAST on NCBI protein sequence of TCONS_00010053-protein >TCONS_00010053-protein ID=TCONS_00010053-protein|Name=TCONS_00010053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=600bp
MAAKHGTDQIYIGEAYLKSEEAITKGFTIEDVNARRDIVLDVAHFEPKLT
CFDDNKHPKTFIEDMVYRLDSYVWRDPDLETSQMALSHTKSLIELLFGYV
RANWVYGSYIKDDVDLIETGSYFSNLRVGLPFEFDFMFDITDILSPAYEI
VQVEDDKERNFISERPELRENIYYCIRLKDDCAFTKCSTIGMLFHVEEFC
ESLHKAFEDAIKFCKYEGWDIFDWSSPKTSPAFSFSMFYDETGILVDLVP
CFRIEATDVYNLPKINSRLNTFFTENQWGSSTSHDDDKGSAYDTQPLYLI
CCDVDFKQSSGFNRYAEIYKGCTFRLSLSLFEKHFYRRLDSNISSALRVF
KYLFQTFPSTLGDCNGVWDKEKNTKLKKKFDKQAKADLKKHKNRIRNNKY
GDEQDPMVTFGCKSSIPSYFFTNFFLKLLSTGEFIQLWKGYGPGDIFLQL
FSYLLKLLETIPSDPFQYTEHSPTVYHHVAVGSWFFEDRSFASKEVSLTD
DQIFGLRSWLHAIVFVLSDPSSTSEIYANFPLRCILPRVECLSCKKHYFI
LNDDIPHLNIEEDEIYRCHIHRLAASSIPIGFNHVDWDDVWPGLSKYCSN Run BLAST on NCBI transcript from alignment at sc0000102:20530..23335+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010053 ID=TCONS_00010053|Name=TCONS_00010053|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at sc0000102:20530..23335+ (Clytia hemisphaerica)
AGCGATTGGAATTGGAAAACTGTTTTTTGTAAGTGCAAATTGTTTTGTTG
GTTGAATATCTCCTAATCTTTGTATGTAAGTTGCTTATTGTTTGTATGTA
AGTGCTTATTGACTCTTCTCTGTGTTGCTGTACACAACAACCTCCgaatt
gattttcattttaagCTACTGTCATGGTGGATTTATGATCTACCATTTTA
TAACTATTGTTATAGTAACCAACTCTATAGCCATCTTATTGAGCATTTAA
ATATATGATGCTTAGTGAATGAATTTAAAACACTTCTATGTTTGGGCTGG
CAGAGTGAAGAGCTTGCGAAGCTTAACGATCTTATCGAGGAAGAATGTAG
ACGTATTGGTTTAGTGCGGGAACGAGGAACTTTGCCCATGAGTCGTTCGA
GAGATGGCCTTTGTATTGAGCTATAAGGAAGCTACATGCATCTCTCGACA
TTCTAAGTCGATCGATCGTTTTGAATGTTCTTTAACATCTTATCTTCTGC
ATAAACTTCAATTCGCACAAAATGTCAATTTTCTtcaagataaaaaattt
aatcatatcatatcatataccATAACCAATTTTTCTAATGTTTCATATCA
ACGATGCTCAAAAATTGTCAGATTTGGCTTAAATTCGGCACACTTATTCC
TTTgatgaatatctgggggtctaccaTTGGGCCTATAAATAATTTGAAGC
TACTGatgttgagcccagtgcgttgtgCACGTTCGACTATGTAAATCCCC
GAAATAAATTCCGTCAAATTGAAAGAAAACTGGAAAATTtgctcattcgc
caaaatttcaatttcttctcTCAATCTTTTCTCAAGGTATGTCCGTGGTA
CTGAGAAAATAATGACGACGATGTCGGGATATATTTGGGTGGAATGACCC
TTTGCGACTTGCTATTTTATAACTTAAAGTATTCTGTAAACATGTTCTTT
TCTAGTAGTGACGTCACTTGCCACTTTCATTTTAGATCAAGAACAAAAAT
ATGGCAGCGAAACATGGGACCGATCAAATCTACATCGGTGAAGCTTACCT
TAAGTCTGAAGAAGCAATAACAAAAGGTTTTACTATTGAAGATGTGAACG
CGAGAAGAGATATCGTTTTAGATGTGGCACATTTTGAACCTAAATTGACC
TGTTTTGATGACAATAAGCATCCTAAAACTTTCATAGAGGATATGGTTTA
TCGTTTGGATAGTTACGTCTGGCGTGACCCTGATCTAGAAACTAGCCAAA
TGGCTTTAAGTCACACAAAATCCCTTATCGAGCTTCTATTCGGATATGTA
CGTGCTAATTGGGTATATGGAAGTTATATAAAGGATGATGTTGACTTGAT
TGAAACTGGCagctatttttcaaatttgagggTTGGTCTACCTTTTGAGT
TCGACTTCATGTTTGATATAACGGATATTTTATCACCAGCCTACGAAATC
GTTCAAGTTGAAGATGACAAAGAGCGGAATTTCATCAGCGAGAGGCCGGA
ATTGCGTGAAAATATTTACTATTGTATCAGATTAAAGGACGACTGTGCAT
TCACAAAATGTTCTACTATCGGCATGTTATTTCATGTTGAGGAGTTTTGC
GAATCACTACACAAAGCCTTTGAAGATGCAATAAAGTTTTGTAAATATGA
AGGATGGGATATATTTGATTGGTCATCGCCCAAAACCTCCCCAGCATTTT
CATTCTCCATGTTTTATGATGAAACTGGCATTTTAGTTGATCTAGTACCT
TGTTTCAGAATCGAAGCAACAGATGTATACAATCTGccgaaaattaattc
aagattGAACACATTCTTCACTGAGAACCAATGGGGTTCAAGTACCTCTC
ATGATGATGACAAAGGCTCTGCTTATGATACTCAACCCCTTTACTTAATT
TGCTGTGATGTTGATTTTAAACAGAGTTCGGGGTTCAATCGTTATGCCGA
AATCTATAAGGGATGCACATTCAGATTGTCCTTATCATTATTCGAAAAGC
ATTTCTATCGCCGTTTAGATTCAAACATATCGTCTGCTTTACGcgttttt
aaatatcttttccAGACTTTTCCGTCAACGCTTGGCGATTGTAATGGTGT
TTGGGATAAAGAAAAGAACaccaaattgaaaaaaaaatttgataaacaag
CAAAGGCTGATTTGAAGAAGCATAAAAACAGAATACGGAACAATAAATAT
GGAGACGAACAAGATCCAATGGTTACATTCGGATGCAAATCATCAATACC
TAGTTATTTCTTCACCAACTTCTTTTTGAAGCTTCTTTCAACTGGAGAAT
TTATTCAGCTATGGAAAGGTTACGGTCCCGGTGATATTTTTCTACAGCTT
TTCTCGTATCTTTTAAAACTGTTAGAAACGATACCTTCAGACCCGTTTCA
GTACACAGAACATTCGCCCACCGTTTATCACCATGTTGCAGTGGgtagtt
ggtttttcgaagatagATCATTTGCAAGCAAAGAAGTCTCCTTGACCGAT
GATCAAATATTTGGTCTTCGATCCTGGTTGCATGCTATCGTATTTGTTTT
ATCTGATCCGAGTAGTACGTCTGAAATATACGCCAATTTTCCCTTACGTT
GTATATTACCTCGAGTTGAATGTTTGAGTTGCAAGAAACATTATTTCATC
TTGAACGACGATATTCCACATTTAAATATCGAGGAAGATGAAATATATCG
ATGTCACATTCATAGATTAGCTGCCTCCTCAATTCCAATTGGTTTTAATC
ATGTGGATTGGGATGATGTTTGGCCTGGCTTGTCTAAAtattgttcaaac
tgaaaa Coding sequence (CDS) from alignment at sc0000102:20530..23335+ >TCONS_00010053 ID=TCONS_00010053|Name=TCONS_00010053|organism=Clytia hemisphaerica|type=CDS|length=1803bp|location=Sequence derived from alignment at sc0000102:20530..23335+ (Clytia hemisphaerica)
ATGGCAGCGAAACATGGGACCGATCAAATCTACATCGGTGAAGCTTACCT
TAAGTCTGAAGAAGCAATAACAAAAGGTTTTACTATTGAAGATGTGAACG
CGAGAAGAGATATCGTTTTAGATGTGGCACATTTTGAACCTAAATTGACC
TGTTTTGATGACAATAAGCATCCTAAAACTTTCATAGAGGATATGGTTTA
TCGTTTGGATAGTTACGTCTGGCGTGACCCTGATCTAGAAACTAGCCAAA
TGGCTTTAAGTCACACAAAATCCCTTATCGAGCTTCTATTCGGATATGTA
CGTGCTAATTGGGTATATGGAAGTTATATAAAGGATGATGTTGACTTGAT
TGAAACTGGCagctatttttcaaatttgagggTTGGTCTACCTTTTGAGT
TCGACTTCATGTTTGATATAACGGATATTTTATCACCAGCCTACGAAATC
GTTCAAGTTGAAGATGACAAAGAGCGGAATTTCATCAGCGAGAGGCCGGA
ATTGCGTGAAAATATTTACTATTGTATCAGATTAAAGGACGACTGTGCAT
TCACAAAATGTTCTACTATCGGCATGTTATTTCATGTTGAGGAGTTTTGC
GAATCACTACACAAAGCCTTTGAAGATGCAATAAAGTTTTGTAAATATGA
AGGATGGGATATATTTGATTGGTCATCGCCCAAAACCTCCCCAGCATTTT
CATTCTCCATGTTTTATGATGAAACTGGCATTTTAGTTGATCTAGTACCT
TGTTTCAGAATCGAAGCAACAGATGTATACAATCTGccgaaaattaattc
aagattGAACACATTCTTCACTGAGAACCAATGGGGTTCAAGTACCTCTC
ATGATGATGACAAAGGCTCTGCTTATGATACTCAACCCCTTTACTTAATT
TGCTGTGATGTTGATTTTAAACAGAGTTCGGGGTTCAATCGTTATGCCGA
AATCTATAAGGGATGCACATTCAGATTGTCCTTATCATTATTCGAAAAGC
ATTTCTATCGCCGTTTAGATTCAAACATATCGTCTGCTTTACGcgttttt
aaatatcttttccAGACTTTTCCGTCAACGCTTGGCGATTGTAATGGTGT
TTGGGATAAAGAAAAGAACaccaaattgaaaaaaaaatttgataaacaag
CAAAGGCTGATTTGAAGAAGCATAAAAACAGAATACGGAACAATAAATAT
GGAGACGAACAAGATCCAATGGTTACATTCGGATGCAAATCATCAATACC
TAGTTATTTCTTCACCAACTTCTTTTTGAAGCTTCTTTCAACTGGAGAAT
TTATTCAGCTATGGAAAGGTTACGGTCCCGGTGATATTTTTCTACAGCTT
TTCTCGTATCTTTTAAAACTGTTAGAAACGATACCTTCAGACCCGTTTCA
GTACACAGAACATTCGCCCACCGTTTATCACCATGTTGCAGTGGgtagtt
ggtttttcgaagatagATCATTTGCAAGCAAAGAAGTCTCCTTGACCGAT
GATCAAATATTTGGTCTTCGATCCTGGTTGCATGCTATCGTATTTGTTTT
ATCTGATCCGAGTAGTACGTCTGAAATATACGCCAATTTTCCCTTACGTT
GTATATTACCTCGAGTTGAATGTTTGAGTTGCAAGAAACATTATTTCATC
TTGAACGACGATATTCCACATTTAAATATCGAGGAAGATGAAATATATCG
ATGTCACATTCATAGATTAGCTGCCTCCTCAATTCCAATTGGTTTTAATC
ATGTGGATTGGGATGATGTTTGGCCTGGCTTGTCTAAAtattgttcaaac
tga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010053-exon-sc0000102-1491911889:20530..20604 | TCONS_00010053-exon-sc0000102-1491911889:20530..20604 | Clytia hemisphaerica | exon |
| TCONS_00010053-exon-sc0000102-1510915933:20530..20604 | TCONS_00010053-exon-sc0000102-1510915933:20530..20604 | Clytia hemisphaerica | exon |
| TCONS_00010053-exon-sc0000102-1575043694:20530..20604 | TCONS_00010053-exon-sc0000102-1575043694:20530..20604 | Clytia hemisphaerica | exon |
| TCONS_00010053-exon-sc0000102-1491911889:21515..23335 | TCONS_00010053-exon-sc0000102-1491911889:21515..23335 | Clytia hemisphaerica | exon |
| TCONS_00010053-exon-sc0000102-1510915933:21515..23335 | TCONS_00010053-exon-sc0000102-1510915933:21515..23335 | Clytia hemisphaerica | exon |
| TCONS_00010053-exon-sc0000102-1575043694:21515..23335 | TCONS_00010053-exon-sc0000102-1575043694:21515..23335 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:20530..23335 + |
Blast
The following BLAST results are available for this feature:
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