TCONS_00010046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010046
Unique NameTCONS_00010046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010046 ID=TCONS_00010046|Name=TCONS_00010046|organism=Clytia hemisphaerica|type=transcript|length=796bp
GTTCCATCCATCTTTTAAAAAAGTATGCCCCACCATATTGCTCAAGCTTC
TTCAAGCAGGGCGGAAAATTAAGCGTGCAATTACACCACATGGGTGGACT
CGGGCAGACTATGATAAGCGCGTATTTACAAGTTTATGCCCACGGAAGTT
AAGCGTGCAATTAGACGGATTTCTCAGACTGGCTAATCTCCTTCCAAGAA
TATCTCCTTAGGCGGCAATCACTAATACCTTCATTTCGGTCGAGgttatt
tgtgattgccgccttacaTTACTAATGCGTAAAACTACATTCAAAGATTT
GACTAATATagttctttcttttttaggCTTGCTGATGTAAAGACCCTTTT
CCCTGATCGATTAAATGGACTGATGTTGGTATATGACTAAAATCCATTAT
ATTGATAACTAAAATAGTTTAGTCTAGAATTAAATGTGGATTTGGTTAAT
TTAGTCTTCACTTTACTACTAAATAAATGATTAAGTTAatgttttttata
ctttttgataggtgtgacaatttcattttgatcaaGCATGTTGCAAAGCC
ACTTGGACATGTGCAAGATTAACTTGGCAAGTTACACTTCCATTTTTCAT
TGAGGCCAAAAAAAATAAgtagtcttgtttccggaaatcggccgggtgaa
cttttttttggaaaaaatatatctcacccggccgcaaatagaaaaaaaca
gcGAGCTCGTcgaaataaaaaagatacataaagagtttattttccatttt
acgattttacgatccatttaacgattgtattcaaagatttataaag
Run BLAST on NCBI

transcript from alignment at sc0000101:350244..351039

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010046 ID=TCONS_00010046|Name=TCONS_00010046|organism=Clytia hemisphaerica|type=transcript|length=796bp|location=Sequence derived from alignment at sc0000101:350244..351039 (Clytia hemisphaerica)
ctttataaatctttgaatacaatcgttaaatggatcgtaaaatcgtaaaa
tggaaaataaactctttatgtatcttttttatttcgACGAGCTCgctgtt
tttttctatttgcggccgggtgagatatattttttccaaaaaaaagttca
cccggccgatttccggaaacaagactacTTATTTTTTTTGGCCTCAATGA
AAAATGGAAGTGTAACTTGCCAAGTTAATCTTGCACATGTCCAAGTGGCT
TTGCAACATGCttgatcaaaatgaaattgtcacacctatcaaaaagtata
aaaaacatTAACTTAATCATTTATTTAGTAGTAAAGTGAAGACTAAATTA
ACCAAATCCACATTTAATTCTAGACTAAACTATTTTAGTTATCAATATAA
TGGATTTTAGTCATATACCAACATCAGTCCATTTAATCGATCAGGGAAAA
GGGTCTTTACATCAGCAAGcctaaaaaagaaagaactATATTAGTCAAAT
CTTTGAATGTAGTTTTACGCATTAGTAAtgtaaggcggcaatcacaaata
acCTCGACCGAAATGAAGGTATTAGTGATTGCCGCCTAAGGAGATATTCT
TGGAAGGAGATTAGCCAGTCTGAGAAATCCGTCTAATTGCACGCTTAACT
TCCGTGGGCATAAACTTGTAAATACGCGCTTATCATAGTCTGCCCGAGTC
CACCCATGTGGTGTAATTGCACGCTTAATTTTCCGCCCTGCTTGAAGAAG
CTTGAGCAATATGGTGGGGCATACTTTTTTAAAAGATGGATGGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005634XLOC_005634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010046-exon-sc0000101-1491911889:350244..351039TCONS_00010046-exon-sc0000101-1491911889:350244..351039Clytia hemisphaericaexon
TCONS_00010046-exon-sc0000101-1510915933:350244..351039TCONS_00010046-exon-sc0000101-1510915933:350244..351039Clytia hemisphaericaexon
TCONS_00010046-exon-sc0000101-1575043694:350244..351039TCONS_00010046-exon-sc0000101-1575043694:350244..351039Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:350244..351039 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.35712	3.25308	2.34018	2.10403	0.420101	0.295244	0.543928	0.602258	0.462332	0.630102	0.798533	0.257022	0.977733	0.424019	0.25952	0.0814509	0.3176	0.139862	0.258746	0.407323	0.644464	0.600576	1.38597	1.89007	0.58731	2.22216	0.436219	0.712091	1.66669	1.14999
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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