TCONS_00010044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010044
Unique NameTCONS_00010044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010044 ID=TCONS_00010044|Name=TCONS_00010044|organism=Clytia hemisphaerica|type=transcript|length=603bp
GAAAGAATGTGTACAAGCTAAAGGCACCaagaatttattgaaaaaaatta
ttcttttcttcttttataaattTACAGACATGGCTTTAGCATTCAAGGGC
AAGCATAAGaactgaaatgaaaattttgagaattcaTCTCAGTTCTTATG
CAAGCTTCTTTCAGGtcttctattttctatttttcatttaaattatcttt
ctttttttttcttgttttattgCAGGACATATTCAATGATATTCCAACCA
AATGATTGTCTCTTTACACTCATTTTTGTAGCATAGTATTTTTCTCCata
agaaatgttttttgattCTTTCCAGAACAATCTCCATGTTATTCCAACCA
AAGTGAAAGGTTTGTTCAGTTTTTCAAATTCCAACCCATATCATATCTTG
CTAATAATTGATTTTGATAACCATTGTTTTCTCACTTCAAGAAACCAGAG
CATTGATCCAACTCAAGCCAGTGCCTGGAGATCATAATACCATTTAGACA
ATTTGAGATAATGAAATTTCCGTATCAATTATTTGAGGATTATTTTATCT
GTGGTTTGCTGAAAAAGAGTCAtcagaacaaaaattttcaaaccagTTTC
TTA
Run BLAST on NCBI

transcript from alignment at sc0000101:310568..311170

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010044 ID=TCONS_00010044|Name=TCONS_00010044|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at sc0000101:310568..311170 (Clytia hemisphaerica)
TAAGAAActggtttgaaaatttttgttctgaTGACTCTTTTTCAGCAAAC
CACAGATAAAATAATCCTCAAATAATTGATACGGAAATTTCATTATCTCA
AATTGTCTAAATGGTATTATGATCTCCAGGCACTGGCTTGAGTTGGATCA
ATGCTCTGGTTTCTTGAAGTGAGAAAACAATGGTTATCAAAATCAATTAT
TAGCAAGATATGATATGGGTTGGAATTTGAAAAACTGAACAAACCTTTCA
CTTTGGTTGGAATAACATGGAGATTGTTCTGGAAAGaatcaaaaaacatt
tcttatGGAGAAAAATACTATGCTACAAAAATGAGTGTAAAGAGACAATC
ATTTGGTTGGAATATCATTGAATATGTCCTGcaataaaacaagaaaaaaa
aagaaagataatttaaatgaaaaatagaaaatagaagaCCTGAAAGAAGC
TTGCATAAGAACTGAGAtgaattctcaaaattttcatttcagttCTTATG
CTTGCCCTTGAATGCTAAAGCCATGTCTGTAaatttataaaagaagaaaa
gaataatttttttcaataaattcttGGTGCCTTTAGCTTGTACACATTCT
TTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005632XLOC_005632Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010044-exon-sc0000101-1491911889:310568..311170TCONS_00010044-exon-sc0000101-1491911889:310568..311170Clytia hemisphaericaexon
TCONS_00010044-exon-sc0000101-1510915933:310568..311170TCONS_00010044-exon-sc0000101-1510915933:310568..311170Clytia hemisphaericaexon
TCONS_00010044-exon-sc0000101-1575043694:310568..311170TCONS_00010044-exon-sc0000101-1575043694:310568..311170Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:310568..311170 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.67284	6.93684	2.24298	1.99491	15.1788	9.40371	5.78836	6.9363	3.41456	1.6918	4.47016	3.41826	2.27567	0.621923	1.58505	1.81074	3.17703	2.14781	1.34008	0.901475	3.91773	2.42051	7.94978	8.82318	3.19035	3.79642	2.96327	3.03071	4.09766	4.78583
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top