TCONS_00010039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010039
Unique NameTCONS_00010039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2957

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010039 ID=TCONS_00010039|Name=TCONS_00010039|organism=Clytia hemisphaerica|type=transcript|length=2957bp
AACTGTCAATCAACTAGCACTTGGCCCATTTGGCTAATATTTTTGCTAAC
CTTGATAAACAAAGTGTTCTGACGGCCATTATCTCATGAAATAATTATGT
TTCCATTACATCTCGTGTTTATATTGGTTGCGGAAAACTTTTCAACTTCA
GAAGCAAACAAAGATGAAGGCGTTTTATACTTTGTTGGAATATATTCATC
TTGTTatggaaaaacaaacagaagtgTGGAAAATGCAATGTGCCAGCACA
CAGACGAATTTTTAAAGTATACCATCGAACGAGAACGGAATTATATACTA
GAGACAGACCATCGGCGATCACAAACACAATACGTAGGTTATGATGTTTG
CAATGATTTCAATAATCTTCACGAGCTGGCTCAAACACTTCTGTTGGAtg
aaaaatacatgatttcGACTAATCATTTAATAAACGTTTCTCACTCTATG
ATCGGTTGGGTTGTGTTACAGCTGTCAGACACCATGACAAACTTTTTTGC
TGGTCTATACCATGACGCAGCTGTGATCGATCTCAATTCCATTAGTCAAG
CAGGTGACTACTTAGTTGAATTAAGAATAGAAATCATTAAGTTTCTTGTC
CAATATCACGAATGGAATAATATCCTGTTATTATATACCAAAGCTGAAAC
ATCCAAATATTACAACTTCTTTACCGGACTTCTTAGAGAATTACGAGAAT
CAAGAGGAACAAGGATTTCAATACACTTCGCACCGATTCGAGGGAATTAC
AACCGATATTCATATTGGCTGCCATCACGTGACAAAAGATTCAACACTCA
ATGGATTCTTCGTAACAGACCTACAGTCATTTTATTTGCCAATAATAAAT
TTGACATTCATCTAGGGTCATTGGTGAATTTGAATCTCACGATTGTTAAC
TTTGAGAGCATGATTAGATGTTTCAGAAACAGTCCACATTCTACTACGAG
CATCAAATTAACGGACACTTCACTGTCTAATATGTATAGAACTCAACCTT
ATTATGTTAATCAGTTGAAATCAAGAAATATTACAAAATCTCAATCAGCT
CTGGAATCATACGCCCGTAGCTTACCACCAATAAAACGGTTCTCCGTGGA
CCTTATGTATGAATTTTGGGGAGTTGACGATGAAGACCTCTTTGGCACCA
ATACATTCAAACCNTATTCGCCAACAATAAATTTGACATTCATCTAGGGT
CATTGGTGAATTTGAATCTCACGATTGTTAACTTTGAGAGCATGATTAGA
TGTTTCAGAAACAGTCCACATTCTACTACGAGCATCAAATTAACGGACAC
TTCACTGTCTAATATGTATAGAACTCAACCTTATTATGTTAATCAGTTGA
AATCAAGAAATATTACAAAATCTCAATCAGCTCTGGAATCATACGCCCGT
AGCTTACCACCAATAAAACGGTTCTCCGTGGACCTTATGTATGAATTTTG
GGGAGTTGACGATGAAGACCTCTTTGGCACCAATACATTCAAACCGAAAA
ATAGGTCTCAATTTCTAGAACAACTTCAAAaggtaaaagaaaaattcaca
TTTAGTTTAAATGATATTTTCGGCTTCAGAAGCAGAGTAGACGATAGCAA
AGAGAGGTCTATCATTTATGGAAAAAGTTGTAGACGAAACTTTACTGAAA
TAGAAGGAAACGATCTGAAAGATTTCGAAAAGTATtacaatgagaaaaat
aaatctgACCCCCGATTTTTAGGAGCAGGTTCAAGTCACTTGCCTCCTTT
AAATTGTACACCCGGACATTACAAAGCGTACGGGAAGGTGACTCAAGGAT
TTTCGTGGACATGTTTGATGTGTAAAGAAAATTACTTCAAATCCGAATAT
GGGAATCAACCTTGTAAAAAATGTACCGGCAAAACATCTACTGCCAACAA
AGCAAGAAATGCTTGTATTGATCCTTACCAGGAGGTTTACATAAATCAAA
ACTCACAGGAATTCGTTATAGTGTTGACATTATGTTGTATTGGTTTTGCC
ATGACGCTGGTCGTGTTGATAATATTCATAACAAAGAGAACAACACCTAT
CGTCACCATTTCTGATTTCCAGATATCTACAATCCACTTGGTCGACATCA
TCCTAATCTTTGCTATTTCACCAGTCATATTTTTCATCCAGCCCACGAAT
GCTATACATTGTCTCTTTAAACCAATCCTTAACAGCTCTTTGTATGTCGT
CAGTATTGGCATTATCTTCATCAAGACACAAAAGATTCTGAAAGCATTCC
TCAGTAAAGTGATAATAACGAGCagggaaattaaaaaaacaacggGGGAA
CAGATTTTCACTATCTTCGTTTTTCTCGGAGTTGTTAATTTAGCCTTCGC
CGTCTCGGTCTACTATGATCCagccaaaattctcaagatTGAGAACTCCC
AAACGTTGCAACGAAACTTCAGCTGCAACACCTATTTTCATAGCAGCATT
ATCATGGGCTTtgaattaatcattcaattatTATGCTCCATTCAAGCGTT
CAGAGGACGAAATCTCCCCAGTGTTATGAACGAAAGTATGATTTTAGTCT
ACACCACGTTCGTTTTAACAGCTGTATTTATGGCAACTTTCGCTATAGTG
CCTTTCCAAAAACCCTGGTACAAAGAAATAGCACAGTGTATTGGTATCAT
TGTAAATAATACAGTAATAATGGTGTTATTATATGGACAGAAAGCGTACC
GGATTATCAGATATCCAGCCAAAAACACGAAATCCTATTTTCGAGAATCA
CGAATGAAAAGCATGAGCGTACAATCTGAAAGTGTCATGTGATGAGAAAT
GAATGGGAAGTGAACTGTCCTGgcaaatttgaaatataaaatgaCTGATA
TATGATCATGTGTATTTTGAGAGAAAATCATGCCAGAATTCTTACATACT
TAATAACCCTACAAAACCATGTTAAATTATAGAACCctttatatttttaa
acttGTG
Run BLAST on NCBI

protein sequence of TCONS_00010039-protein

>TCONS_00010039-protein ID=TCONS_00010039-protein|Name=TCONS_00010039-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp
MIRCFRNSPHSTTSIKLTDTSLSNMYRTQPYYVNQLKSRNITKSQSALES
YARSLPPIKRFSVDLMYEFWGVDDEDLFGTNTFKPKNRSQFLEQLQKVKE
KFTFSLNDIFGFRSRVDDSKERSIIYGKSCRRNFTEIEGNDLKDFEKYYN
EKNKSDPRFLGAGSSHLPPLNCTPGHYKAYGKVTQGFSWTCLMCKENYFK
SEYGNQPCKKCTGKTSTANKARNACIDPYQEVYINQNSQEFVIVLTLCCI
GFAMTLVVLIIFITKRTTPIVTISDFQISTIHLVDIILIFAISPVIFFIQ
PTNAIHCLFKPILNSSLYVVSIGIIFIKTQKILKAFLSKVIITSREIKKT
TGEQIFTIFVFLGVVNLAFAVSVYYDPAKILKIENSQTLQRNFSCNTYFH
SSIIMGFELIIQLLCSIQAFRGRNLPSVMNESMILVYTTFVLTAVFMATF
AIVPFQKPWYKEIAQCIGIIVNNTVIMVLLYGQKAYRIIRYPAKNTKSYF
RESRMKSMSVQSESVM
Run BLAST on NCBI

transcript from alignment at sc0000101:2783..5739

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010039 ID=TCONS_00010039|Name=TCONS_00010039|organism=Clytia hemisphaerica|type=transcript|length=2957bp|location=Sequence derived from alignment at sc0000101:2783..5739 (Clytia hemisphaerica)
CACaagtttaaaaatataaagGGTTCTATAATTTAACATGGTTTTGTAGG
GTTATTAAGTATGTAAGAATTCTGGCATGATTTTCTCTCAAAATACACAT
GATCATATATCAGtcattttatatttcaaatttgcCAGGACAGTTCACTT
CCCATTCATTTCTCATCACATGACACTTTCAGATTGTACGCTCATGCTTT
TCATTCGTGATTCTCGAAAATAGGATTTCGTGTTTTTGGCTGGATATCTG
ATAATCCGGTACGCTTTCTGTCCATATAATAACACCATTATTACTGTATT
ATTTACAATGATACCAATACACTGTGCTATTTCTTTGTACCAGGGTTTTT
GGAAAGGCACTATAGCGAAAGTTGCCATAAATACAGCTGTTAAAACGAAC
GTGGTGTAGACTAAAATCATACTTTCGTTCATAACACTGGGGAGATTTCG
TCCTCTGAACGCTTGAATGGAGCATAataattgaatgattaattcaAAGC
CCATGATAATGCTGCTATGAAAATAGGTGTTGCAGCTGAAGTTTCGTTGC
AACGTTTGGGAGTTCTCAatcttgagaattttggctGGATCATAGTAGAC
CGAGACGGCGAAGGCTAAATTAACAACTCCGAGAAAAACGAAGATAGTGA
AAATCTGTTCCCccgttgtttttttaatttccctGCTCGTTATTATCACT
TTACTGAGGAATGCTTTCAGAATCTTTTGTGTCTTGATGAAGATAATGCC
AATACTGACGACATACAAAGAGCTGTTAAGGATTGGTTTAAAGAGACAAT
GTATAGCATTCGTGGGCTGGATGAAAAATATGACTGGTGAAATAGCAAAG
ATTAGGATGATGTCGACCAAGTGGATTGTAGATATCTGGAAATCAGAAAT
GGTGACGATAGGTGTTGTTCTCTTTGTTATGAATATTATCAACACGACCA
GCGTCATGGCAAAACCAATACAACATAATGTCAACACTATAACGAATTCC
TGTGAGTTTTGATTTATGTAAACCTCCTGGTAAGGATCAATACAAGCATT
TCTTGCTTTGTTGGCAGTAGATGTTTTGCCGGTACATTTTTTACAAGGTT
GATTCCCATATTCGGATTTGAAGTAATTTTCTTTACACATCAAACATGTC
CACGAAAATCCTTGAGTCACCTTCCCGTACGCTTTGTAATGTCCGGGTGT
ACAATTTAAAGGAGGCAAGTGACTTGAACCTGCTCCTAAAAATCGGGGGT
cagatttatttttctcattgtaATACTTTTCGAAATCTTTCAGATCGTTT
CCTTCTATTTCAGTAAAGTTTCGTCTACAACTTTTTCCATAAATGATAGA
CCTCTCTTTGCTATCGTCTACTCTGCTTCTGAAGCCGAAAATATCATTTA
AACTAAAtgtgaatttttcttttacctTTTGAAGTTGTTCTAGAAATTGA
GACCTATTTTTCGGTTTGAATGTATTGGTGCCAAAGAGGTCTTCATCGTC
AACTCCCCAAAATTCATACATAAGGTCCACGGAGAACCGTTTTATTGGTG
GTAAGCTACGGGCGTATGATTCCAGAGCTGATTGAGATTTTGTAATATTT
CTTGATTTCAACTGATTAACATAATAAGGTTGAGTTCTATACATATTAGA
CAGTGAAGTGTCCGTTAATTTGATGCTCGTAGTAGAATGTGGACTGTTTC
TGAAACATCTAATCATGCTCTCAAAGTTAACAATCGTGAGATTCAAATTC
ACCAATGACCCTAGATGAATGTCAAATTTATTGTTGGCGAATANGGTTTG
AATGTATTGGTGCCAAAGAGGTCTTCATCGTCAACTCCCCAAAATTCATA
CATAAGGTCCACGGAGAACCGTTTTATTGGTGGTAAGCTACGGGCGTATG
ATTCCAGAGCTGATTGAGATTTTGTAATATTTCTTGATTTCAACTGATTA
ACATAATAAGGTTGAGTTCTATACATATTAGACAGTGAAGTGTCCGTTAA
TTTGATGCTCGTAGTAGAATGTGGACTGTTTCTGAAACATCTAATCATGC
TCTCAAAGTTAACAATCGTGAGATTCAAATTCACCAATGACCCTAGATGA
ATGTCAAATTTATTATTGGCAAATAAAATGACTGTAGGTCTGTTACGAAG
AATCCATTGAGTGTTGAATCTTTTGTCACGTGATGGCAGCCAATATGAAT
ATCGGTTGTAATTCCCTCGAATCGGTGCGAAGTGTATTGAAATCCTTGTT
CCTCTTGATTCTCGTAATTCTCTAAGAAGTCCGGTAAAGAAGTTGTAATA
TTTGGATGTTTCAGCTTTGGTATATAATAACAGGATATTATTCCATTCGT
GATATTGGACAAGAAACTTAATGATTTCTATTCTTAATTCAACTAAGTAG
TCACCTGCTTGACTAATGGAATTGAGATCGATCACAGCTGCGTCATGGTA
TAGACCAGCAAAAAAGTTTGTCATGGTGTCTGACAGCTGTAACACAACCC
AACCGATCATAGAGTGAGAAACGTTTATTAAATGATTAGTCgaaatcatg
tatttttcaTCCAACAGAAGTGTTTGAGCCAGCTCGTGAAGATTATTGAA
ATCATTGCAAACATCATAACCTACGTATTGTGTTTGTGATCGCCGATGGT
CTGTCTCTAGTATATAATTCCGTTCTCGTTCGATGGTATACTTTAAAAAT
TCGTCTGTGTGCTGGCACATTGCATTTTCCAcacttctgtttgtttttcc
atAACAAGATGAATATATTCCAACAAAGTATAAAACGCCTTCATCTTTGT
TTGCTTCTGAAGTTGAAAAGTTTTCCGCAACCAATATAAACACGAGATGT
AATGGAAACATAATTATTTCATGAGATAATGGCCGTCAGAACACTTTGTT
TATCAAGGTTAGCAAAAATATTAGCCAAATGGGCCAAGTGCTAGTTGATT
GACAGTT

Coding sequence (CDS) from alignment at sc0000101:2783..5739

>TCONS_00010039 ID=TCONS_00010039|Name=TCONS_00010039|organism=Clytia hemisphaerica|type=CDS|length=1551bp|location=Sequence derived from alignment at sc0000101:2783..5739 (Clytia hemisphaerica)
TCACATGACACTTTCAGATTGTACGCTCATGCTTTTCATTCGTGATTCTC
GAAAATAGGATTTCGTGTTTTTGGCTGGATATCTGATAATCCGGTACGCT
TTCTGTCCATATAATAACACCATTATTACTGTATTATTTACAATGATACC
AATACACTGTGCTATTTCTTTGTACCAGGGTTTTTGGAAAGGCACTATAG
CGAAAGTTGCCATAAATACAGCTGTTAAAACGAACGTGGTGTAGACTAAA
ATCATACTTTCGTTCATAACACTGGGGAGATTTCGTCCTCTGAACGCTTG
AATGGAGCATAataattgaatgattaattcaAAGCCCATGATAATGCTGC
TATGAAAATAGGTGTTGCAGCTGAAGTTTCGTTGCAACGTTTGGGAGTTC
TCAatcttgagaattttggctGGATCATAGTAGACCGAGACGGCGAAGGC
TAAATTAACAACTCCGAGAAAAACGAAGATAGTGAAAATCTGTTCCCccg
ttgtttttttaatttccctGCTCGTTATTATCACTTTACTGAGGAATGCT
TTCAGAATCTTTTGTGTCTTGATGAAGATAATGCCAATACTGACGACATA
CAAAGAGCTGTTAAGGATTGGTTTAAAGAGACAATGTATAGCATTCGTGG
GCTGGATGAAAAATATGACTGGTGAAATAGCAAAGATTAGGATGATGTCG
ACCAAGTGGATTGTAGATATCTGGAAATCAGAAATGGTGACGATAGGTGT
TGTTCTCTTTGTTATGAATATTATCAACACGACCAGCGTCATGGCAAAAC
CAATACAACATAATGTCAACACTATAACGAATTCCTGTGAGTTTTGATTT
ATGTAAACCTCCTGGTAAGGATCAATACAAGCATTTCTTGCTTTGTTGGC
AGTAGATGTTTTGCCGGTACATTTTTTACAAGGTTGATTCCCATATTCGG
ATTTGAAGTAATTTTCTTTACACATCAAACATGTCCACGAAAATCCTTGA
GTCACCTTCCCGTACGCTTTGTAATGTCCGGGTGTACAATTTAAAGGAGG
CAAGTGACTTGAACCTGCTCCTAAAAATCGGGGGTcagatttatttttct
cattgtaATACTTTTCGAAATCTTTCAGATCGTTTCCTTCTATTTCAGTA
AAGTTTCGTCTACAACTTTTTCCATAAATGATAGACCTCTCTTTGCTATC
GTCTACTCTGCTTCTGAAGCCGAAAATATCATTTAAACTAAAtgtgaatt
tttcttttacctTTTGAAGTTGTTCTAGAAATTGAGACCTATTTTTCGGT
TTGAATGTATTGGTGCCAAAGAGGTCTTCATCGTCAACTCCCCAAAATTC
ATACATAAGGTCCACGGAGAACCGTTTTATTGGTGGTAAGCTACGGGCGT
ATGATTCCAGAGCTGATTGAGATTTTGTAATATTTCTTGATTTCAACTGA
TTAACATAATAAGGTTGAGTTCTATACATATTAGACAGTGAAGTGTCCGT
TAATTTGATGCTCGTAGTAGAATGTGGACTGTTTCTGAAACATCTAATCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005627XLOC_005627Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010039-proteinTCONS_00010039-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010039-exon-sc0000101-1491911889:2783..5739TCONS_00010039-exon-sc0000101-1491911889:2783..5739Clytia hemisphaericaexon
TCONS_00010039-exon-sc0000101-1510915933:2783..5739TCONS_00010039-exon-sc0000101-1510915933:2783..5739Clytia hemisphaericaexon
TCONS_00010039-exon-sc0000101-1575043694:2783..5739TCONS_00010039-exon-sc0000101-1575043694:2783..5739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:2783..5739 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.309849	0.188845	0.321592	0.185916	0.191514	0.0825475	0.165983	0.155392	0.032638	0.0673791	0	0.034393	0.0257589	0	0.0219928	0.0314689	0.125993	0.149006	0	0.0143612	0.124825	0.0730623	0.236845	0.686352	0.554452	1.2742	0.0708108	0.0755712	0.028659	0.0437985
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00010039 vs. Swiss-Prot (Human)
Match: GRM5 (Metabotropic glutamate receptor 5 OS=Homo sapiens GN=GRM5 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.748e-19
Identity = 109/437 (24.94%), Postives = 181/437 (41.42%), Query Frame = 3 
Query: 1482 NTFKPKNRSQFLEQLQKVKEKFTFSLNDIFGFRSRVDDSKERSIIYGKSCRRNFTEIEGNDLKDF---EKYYNEKNKSDPRFLGAGSSHL------PPLNCTPGHYKAYGKVTQGFSWTCLMCKEN-YFKSEYGNQPCKKCTGKTSTANKARNACIDPYQEVYINQNSQEFVIVLTLCCIGFAMTLVVLIIFITKRTTPIVTISDFQISTIHLVDIILIFAISPVIFFIQPTNAIHCLFKPILNSSLYVVSIGIIFIKTQKILK--AFLSKVIITSREIKKTTGEQIFTIFVFLGVVNLAFAVSVY-YDPAKILKIENSQTLQRNFSCNTYFHSSII-MGFELIIQLLCSIQAFRGRNLPSVMNESMILVYTTFVLTAVFMATFAIVPFQKPWYKEIAQCIGIIVNNTVIMVLLYGQKAYRIIRYPAKNTKSYFRES 2750
            +  KP +  + LE L  +K  FT    D   F    D      I+       NF E+ G D  D+     + N + K D   + +  S++       P  C  G  K   K      WTC  CKEN Y   EY    CK C   +   +      + P Q  Y+     E +  +   C+G   TL V ++FI  R TP+V  S  ++  I L  I L +  +     I     I+C  + I       +S   +  KT +I +  A   K I T +    +   Q+   F+ +  + L   V+++  +P  I+  +     +    CNT     +  +G+  ++ L C+  AF+ RN+P+  NE+  + +T +    +++A F  + F    YK I  C  + ++ TV +  ++  K Y I+  P +N +S F  S
Sbjct:  427 DAMKPIDGRKLLESL--MKTNFTGVSGDTILFDENGDSPGRYEIM-------NFKEM-GKDYFDYINVGSWDNGELKMDDDEVWSKKSNIIRSVCSEP--CEKGQIKVIRKGEVSCCWTCTPCKENEYVFDEYT---CKACQLGSWPTDDLTGCDLIPVQ--YLRWGDPEPIAAVVFACLGLLATLFVTVVFIIYRDTPVVKSSSRELCYIILAGICLGYLCT--FCLIAKPKQIYCYLQRIGIGLSPAMSYSALVTKTNRIARILAGSKKKICTKKPRFMSACAQLVIAFILI-CIQLGIIVALFIMEPPDIMH-DYPSIREVYLICNTTNLGVVTPLGYNGLLILSCTFYAFKTRNVPANFNEAKYIAFTMYTTCIIWLA-FVPIYFGSN-YKIITMCFSVSLSATVALGCMFVPKVYIILAKPERNVRSAFTTS 840
The following BLAST results are available for this feature:
BLAST of TCONS_00010039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM52.748e-1924.94Metabotropic glutamate receptor 5 OS=Homo sapiens ... [more]
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