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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010030 ID=TCONS_00010030|Name=TCONS_00010030|organism=Clytia hemisphaerica|type=transcript|length=1590bp
ggaGTTCCTCAGGTTTGGAGGTGGTTAGAccttttttgaggttttttaga
tttttttttacatgTTGAAAGATTTATTGTTTTGTGTGGTTTGTTATAGC
AATGTACATTTATAATTCTTTGCCAATTATTTTCACTTTACCAATCGCAT
TCTATTTTCATACGCATCCACCACCATCGAAATTTCACCAAGCTCAAAAT
GTTGaCACCCATCTCAATGGTCAACATCGATTCAAGCTGCAAAATGATTT
ACTTTCACAacttttggaaaaaacttttgGAAGGGAAGGTCGTCTCAACT
TGTTCCTCTTTGataaaatgacacaaaaattTCATTCCCTAAATAAAGGC
AAAATGTTGGACCTTTGGTGGATTGTCACAGCCTTCACCTCTCATACTCT
ATTTGCGCTCGCTTCTCTATTCATCTATGAACATACTGTACTGGGTGTTT
GCTGCAAAATCGTCGTCCGCAAGATGTCTCGAAGTTCGAAACTGTTGTTG
ATGGTGACTCGAAAAGCATTGAATcgagaaaatattttgcaacGAGCAGA
CTCAATGTCATCAACAAACGAAGATGAATTGGACCTTTTCGTCGAATGCg
aagaaacattcgaaaatcgaTTAGTGGCTCGCGAAGAGAGTATTCCAAAG
GCCAATCACAAGGATGAGAAAATGTTAGAAAATAATTCCGACCCTCTATC
GAGTAATGACAGCAATNCCGCAAGATGTCTCGAAGTTCGAAACTGTTGTT
GATGGTGACTCGAAAAGCATTGAATcgagaaaatattttgcaacGAGCAG
ACTCTATGTCATCAACAAACGAAGATGAATTGGACCTTTTCGTCGAATGC
gaagaaacattcgaaaatcgaTTAGTGGCTCGCGAAGAGAGTATTCCAAA
GGCCAATCACAAGGATGAGAAAATGTTAGAACATAATTCCGACCCTCTAT
CGAGTAATGACATCAACGAATCGATGCAAGTCGAGAAACGAAAAGATTCG
GGTGTTATTGTTCCGAATGCATCGATTGGAACGATGGTATCGAATGTCGA
TTTAGTCGAGAAATCGACCGAAACAACTACCGAGGAATTGATAAGTGCAG
CAAATATGATGGTTTTGAATTCAACTCTCGCTTATGGAATCGAATCGAGT
CCTGAGAAATTTAAACGGTTTTTACACGAACGAAACGAAGATGTTGATCG
ATTAGGAATCAGTTTCGATGAAGGATACCTCGATGAAAGCGATACTGATT
TATCGAATGAAAATGATCGATCTCGACTCATggatatttttgatttatca
TCATTAGGTGAAACTGTGATGGAAAAAATCTCTTTGCTTGTATGAATCTA
AATATCGTTACTCTTTTAGTCCGGCTTATAAGAAAGTACAACCAACTGTA
ATTTTAAATTAAGATAGTCTTACCAATAAATACCTTGAGATAGAAGTGTT
TTAATGGtgcaatttttatttcaaaagacACTGACTGAGGCGAAATTTTA
CATTAGTGTAACATTAGAATCAAAGAAAACACCAATTGGAATTTTATAAT
CGAAGATTTcctcaacaaaaacaaaaatttgctaGGGCAG Run BLAST on NCBI transcript from alignment at sc0000101:512909..516576- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010030 ID=TCONS_00010030|Name=TCONS_00010030|organism=Clytia hemisphaerica|type=transcript|length=3668bp|location=Sequence derived from alignment at sc0000101:512909..516576- (Clytia hemisphaerica)
GGAGTTCCTCAGGTTTGGAGGTGGTTAGACCTTTTTTGAGGTTTTTTAGA
TTTTTTTTTACATGTTGAAAGATTTATTGTTTTGTGTGGTTTGTTATAGC
AATGTACATTTATAATTCTTTGCCAATTATTTTCACTTTACCAATCGCAT
TCTATTTTCATACGCATCCACCACCATCGAAATTTCACCAAGCTCAAAAT
GTTGGTAAGTTTTTTGTGTTTTTTTCTTTTCTCGAAATACTGTAATATCT
GATTCAAAACCTCCCCCGATTGTTTTGCGTGATGGAGTGAGGTGGTCCTT
CCTTTGGCGTGATCTTAAGCGTGAGACGTGACTGATAAAATAAATCTTTT
TTGGCTGGCCCGACTGGCGTGCAGGGACTAGGTGGGAGACCAGGTGCTTA
CACAACTTGAGTAAAATAATAACCTTTGTAAAGTCTAGTGAGTAAGTAAG
TATTTCCTTCGTCTTTGAAATACCAGAAAAGTTTCGATTTCCTTTTCACA
CTCCGGGGAGGGGGGGGTTTAGGGTTGTAAGCTGACGGACGGGATGCCGC
CCGACTTTCGAACTTTGGACCCTTTCCGAGACTAAAAAGGAGAAAACAAA
TAAAAAAATTGGGAATTTTACGACCCTACGCGGGACAAATTTGACCAATT
TTGTCCAAATTTTGATTTTTCAGGGAGTAAAAGGTTGAAATCTTTCTATT
TTTCTGGCCCTTAGTGGGACTTTGGAAGTCCAAAGAAGGTACCCTTTAAG
GGCGGCACATACCGTACCCTCCATTTGCCTAAGTACCCCCCGCCCCTGGG
TTCACACTACAGTAAAGTTTCGGGAAAGTGACTGACTACCAACAAGCCGC
CCTCAAGGAACATTTTAAGAAAAAAGACTTACCACCAGGGTTGCTATCAT
CAGATACACGTTTTTTTTTAAGAATCACACTTTTAAGAAACATGAGGCTC
AGAATGCCTAAAAACTAAAAAACATCTAAGAAACATGCTGAGGCTGAAAA
TGAAAAAATGACATTTTTAATTCGTTTTTTTTAAGAACCTTCCAATCAAA
ACATGAAAAATAGGCTGATTATGTCAAAAAGTTTAGAAACATGTAAGAAA
CATTTAAGGCTCAAAAGGCTGATTTCTCAAGAAACATTGAGGCTGCTTGG
TAAAACTAGTTTAAAAAAAAAAAAACGTGTACAAATTTTCCTCTCCTCCA
GATAAAGTAAAGTATTTTGTGCGACCGCAGTCGAGAGCAACCCGAAGGCT
CCCTTTTCTCTAGTTGTCCACCCAAAGGTAGGGGCCGCTACTCCTTTCCC
TGGATTTCTCCACTTACCCTTGACCCTTCTTTTTTGCATTAAGCAGAGCG
GCATCAAGTACCATTCTGGAAATCTTTGGTATGACCCGGCTGGGGCTGGG
CGGGGGTTGAACCCACGCCACTGTAGCTGGATGCTCTAACTTCGTGCCAC
AACACAAGGTGTCACTGCCGCTGAGGAGGCCCAACTCTTGGACAGATGGA
AATGCTGCAACCCCCTAGAATTCGAGGCAATTGGAGGTTTAAACCCCTCT
GGAATTCTGAATTTTTGTTTGAATTCTTTTTTTAGACACCCATCTCAATG
GTCAACATCGATTCAAGCTGCAAAATGATTTACTTTCACAACTTTTGGAA
AAAACTTTTGGAAGGGAAGGTCGTCTCAACTTGTTCCTCTTTGATAAAAT
GACACAAAAATTTCATTCCCTAAATAAAGGTAATTTTAGATTCTTTTACT
TTTATGATAATTTCAAAATCTTATCCTTCTTCTATTGCAGTCAGTTAGTG
TTCTTTAAGCACTTGTGGTCCCCAGGTTTAACTAGGTAGTCAACCGTCCC
AACCTTCTTAAAAACTAAGCAAAAGGCAAAAGCCAACACTACTATCAAAG
CAACACTTGAAAATTTAGCCTTGCACATGGCTTCAAAAAATTAAAAATTT
ATCTCTATATACATACTTTTCTCCTTTCCTCAGGCAAAATGTTGGACCTT
TGGTGGATTGTCACAGCCTTCACCTCTCATACTCTATTTGCGCTCGCTTC
TCTATTCATCTATGAACATACTGTACTGGGTGTTTGCTGCAAAATCGTCG
TGTAAGAAAAAAGCATTTTGTTAAACTTCTAAACAGTCGGGAAGTGTACT
TATAGGTGCCTATTAAACTTTTCATTTTAACATTAAAGAGGGGGGTTTGT
AGGGTTTCGAAATACTGTTTTCCCGTCAAAATCTTTGCTGAATCGTGGAA
TCCCGGAAATTGAAAAAGAAAATAACACCTTCACACCGGTTTGAAAAGCT
TGAAATATCGAAATACTGACAAAAAATAAGGCTAAATACCGTCACCGTCT
GATTTTAAAATACCGTATTCCGTCTATTTTTTCGTCAAATCCCGTAATAC
CGTACTAAGAAAGGGCCGATCCCGTCACACCATAAAAGTACAATCCCCCC
CTAAAGAGACTCCACGGTACCATATTTTTATGGTACACTATCCTCAGATA
CAGGCTTCAACTAATCAAATTCACAAAACACTTCTTTTCTACAGCCGCAA
GATGTCTCGAAGTTCGAAACTGTTGTTGATGGTGACTCGAAAAGCATTGA
ATCGAGAAAATATTTTGCAACGAGCAGACTCAATGTCATCAACAAACGAA
GATGAATTGGACCTTTTCGTCGAATGCGAAGAAACATTCGAAAATCGATT
AGTGGCTCGCGAAGAGAGTATTCCAAAGGCCAATCACAAGGATGAGAAAA
TGTTAGAAAATAATTCCGACCCTCTATCGAGTAATGACAGCAATNCCGCA
AGATGTCTCGAAGTTCGAAACTGTTGTTGATGGTGACTCGAAAAGCATTG
AATCGAGAAAATATTTTGCAACGAGCAGACTCTATGTCATCAACAAACGA
AGATGAATTGGACCTTTTCGTCGAATGCGAAGAAACATTCGAAAATCGAT
TAGTGGCTCGCGAAGAGAGTATTCCAAAGGCCAATCACAAGGATGAGAAA
ATGTTAGAACATAATTCCGACCCTCTATCGAGTAATGACATCAACGAATC
GATGCAAGTCGAGAAACGAAAAGATTCGGGTGTTATTGTTCCGAATGCAT
CGATTGGAACGATGGTATCGAATGTCGATTTAGTCGAGAAATCGACCGAA
ACAACTACCGAGGAATTGATAAGTGCAGCAAATATGATGGTTTTGAATTC
AACTCTCGCTTATGGAATCGAATCGAGTCCTGAGAAATTTAAACGGTTTT
TACACGAACGAAACGAAGATGTTGATCGATTAGGAATCAGTTTCGATGAA
GGATACCTCGATGAAAGCGATACTGATTTATCGAATGAAAATGATCGATC
TCGACTCATGGATATTTTTGATTTATCATCATTAGGTGAAACTGTGATGG
AAAAAATCTCTTTGCTTGTATGAATCTAAATATCGTTACTCTTTTAGTCC
GGCTTATAAGAAAGTACAACCAACTGTAATTTTAAATTAAGATAGTCTTA
CCAATAAATACCTTGAGATAGAAGTGTTTTAATGGTGCAATTTTTATTTC
AAAAGACACTGACTGAGGCGAAATTTTACATTAGTGTAACATTAGAATCA
AAGAAAACACCAATTGGAATTTTATAATCGAAGATTTCCTCAACAAAAAC
AAAAATTTGCTAGGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010030-exon-sc0000101-1575043694:516373..516576 | TCONS_00010030-exon-sc0000101-1575043694:516373..516576 | Clytia hemisphaerica | exon |
| TCONS_00010030-exon-sc0000101-1575043694:514848..514991 | TCONS_00010030-exon-sc0000101-1575043694:514848..514991 | Clytia hemisphaerica | exon |
| TCONS_00010030-exon-sc0000101-1575043694:514476..514593 | TCONS_00010030-exon-sc0000101-1575043694:514476..514593 | Clytia hemisphaerica | exon |
| TCONS_00010030-exon-sc0000101-1575043694:512909..514032 | TCONS_00010030-exon-sc0000101-1575043694:512909..514032 | Clytia hemisphaerica | exon |
| TCONS_00010030-exon-sc0000101-1510915933:516373..516576 | TCONS_00010030-exon-sc0000101-1510915933:516373..516576 | Clytia hemisphaerica | exon |
| TCONS_00010030-exon-sc0000101-1510915933:514848..514991 | TCONS_00010030-exon-sc0000101-1510915933:514848..514991 | Clytia hemisphaerica | exon |
| TCONS_00010030-exon-sc0000101-1510915933:514476..514593 | TCONS_00010030-exon-sc0000101-1510915933:514476..514593 | Clytia hemisphaerica | exon |
| TCONS_00010030-exon-sc0000101-1510915933:512909..514032 | TCONS_00010030-exon-sc0000101-1510915933:512909..514032 | Clytia hemisphaerica | exon |
| TCONS_00010030-exon-sc0000101-1491911889:516373..516576 | TCONS_00010030-exon-sc0000101-1491911889:516373..516576 | Clytia hemisphaerica | exon |
| TCONS_00010030-exon-sc0000101-1491911889:514848..514991 | TCONS_00010030-exon-sc0000101-1491911889:514848..514991 | Clytia hemisphaerica | exon |
| TCONS_00010030-exon-sc0000101-1491911889:514476..514593 | TCONS_00010030-exon-sc0000101-1491911889:514476..514593 | Clytia hemisphaerica | exon |
| TCONS_00010030-exon-sc0000101-1491911889:512909..514032 | TCONS_00010030-exon-sc0000101-1491911889:512909..514032 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000101 | supercontig | sc0000101:512909..516576 - |
Blast
The following BLAST results are available for this feature:
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