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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010024 ID=TCONS_00010024|Name=TCONS_00010024|organism=Clytia hemisphaerica|type=transcript|length=1411bp
AATAAAAGTAATTTGTGTGCAATGTTGTTATTCTATAAGAGAGGGCTAGT
CTATGTTTGTTTCGTGTAGAGAGTTTTCATAGAGCAACTCTAGTAGTGTA
TGAAAGGTGCATATTTTAGGCTTGAAAATATTCATTCTTGATCTAAAGAT
GAGCGAGTCAAAAGAAAACGAGAAAATCGAAGAGCAGAAAGAGCCTGCTC
GATTCACACAACCATGGAAGAATAGTGATGTTGTTTTGGTTGCCGAAGAG
AAAGAAATACACGTTCATTCAACTACGTTATCTATGGTTTCACCCGTTTT
TGAGGCCATGTTTAATGGCAGTTTTAAGGAGTCAAAGACTAAGAAAGTCA
CTCTGGAAGGGAAATCGTACGATACTTTAATGTACGTCATGAAGATGATT
TATCCTTTTGACAACATCAAATTTGaGTTTGATTCACTTGTTTGTGAAAC
GTgtgaaacaaaagaaagcaaTGGGTTAATCTATTCAACCAAAGgTTCTT
GCCGTCGTTGTAATGCTGGGCTATCAAACCCTCGAATTCAACACCTGGTA
AGACGTTTGCAAGGCCTTTATCTTCTGGCAAACGAGTATATGATTGATGT
GGTTCTAGATCAGGTCAAATGTGAGCTGACACGACAAAGCAAACAAATTA
TGAATATGTATCATGCATTTGATCTGTTGGAAACTGCGGAGGTGACACAG
CTGGAAGAACTGAAAACTACATGTTTGCATTTCTCGAAAAGTTATTTGTC
ATCGTACACATTGATGAACCAATTGCTTACAAATAGGAAGATATCCTTAG
AAACTCAACTGAGATTGAAAGGAGTATTGTTAACATACATACTAGCAAGG
ACCAGCAACCCTGGAGGGTCCTATTTGAACGAAATGAAACAAGTTGCAGA
TGACTTTAGCACAATTTCCTTAGAAAAATCTCATAAAGCTGTCCAATGAT
TAACGAAAAATTTATACTTCTTGAGATTGTTTTTTTCAACTGTTTTCATT
TATGGTTCAATTCGAAATTTTGTAATGAGGAgaattagattttttctttt
agttcCAAATATCAAGTTTATTCCTGATATTGACTTGTAAAGCAAAcgaa
ataaagaaataaaatcctcTGTTTCTTTCATATTCTCTATTGCTAAGCCA
tcttaaagattttcaaaacacaaactcTCACCAATATTTTCTGCGACTTC
TTCTTCCTCAGTGATATCAATACATTCAGTGGGTTGTTTACCACCCTCCA
CCACTGGTAGTTGAGGTCCAAACATAACCGGTGAATTGTTGTTATTATAA
ACTTCAGTTGAGTTTGAAACCTCTTTCATTTCAATGTCTGCTTGCCCAAA
ACCACCTggtgaaaaaacaaacaattgacaataatttttgagtttttgat
ttgtttgaacA Run BLAST on NCBI protein sequence of TCONS_00010024-protein >TCONS_00010024-protein ID=TCONS_00010024-protein|Name=TCONS_00010024-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MSESKENEKIEEQKEPARFTQPWKNSDVVLVAEEKEIHVHSTTLSMVSPV
FEAMFNGSFKESKTKKVTLEGKSYDTLMYVMKMIYPFDNIKFEFDSLVCE
TCETKESNGLIYSTKGSCRRCNAGLSNPRIQHLVRRLQGLYLLANEYMID
VVLDQVKCELTRQSKQIMNMYHAFDLLETAEVTQLEELKTTCLHFSKSYL
SSYTLMNQLLTNRKISLETQLRLKGVLLTYILARTSNPGGSYLNEMKQVA
DDFSTISLEKSHKAVQ Run BLAST on NCBI transcript from alignment at sc0000101:395901..398481- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010024 ID=TCONS_00010024|Name=TCONS_00010024|organism=Clytia hemisphaerica|type=transcript|length=2581bp|location=Sequence derived from alignment at sc0000101:395901..398481- (Clytia hemisphaerica)
AATAAAAGTAATTTGTGTGCAATGTTGTTATTCTATAAGAGAGGGCTAGT
CTATGTTTGTTTCGTGTAGAGAGTTTTCATAGAGCAACTCTAGTAGTGTA
TGAAAGGTGCATATTTTAGGCTTGAAAATATTCATTCTTGATCTAAAGAT
GAGCGAGTCAAAAGAAAACGAGAAAATCGAAGAGCAGAAAGAGCCTGCTC
GATTCACACAACCATGGAAGAATAGTGATGTTGTTTTGGTTGCCGAAGAG
AAAGAAATACACGTTCATTCAACTACGTTATCTATGGTTTCACCCGTTTT
TGAGGCCATGTTTAATGGCAGTTTTAAGGAGTCAAAGACTAAGAAAGTCA
CTCTGGAAGGGAAATCGTACGATACTTTAATGTACGTCATGAAGATGATT
TATCCTTTTGACAACATCAAATTTGGTAGGTGCTTTTTAAATAGAACAAT
TTTTATGAGAATATGAGGCTCGAATAAATCAAGATATAAAGACAAAACAG
GATAAAGAACAATTTTTATTTTTTTCTTAAGAACAAAGCTAAGCTTGAAA
TGACCAAACTTTAAACAAATTTTAAGAATCAAAGTCAAAATATACAAGAA
CATTGGAACCTCAACAAAATCTTACTGGCTCACTGGTTTATTGCTGTTAA
CCTGTTCAAATTTAAGGGCAAAAGATATCTAAGATTTTATTCTCAATTCT
TTCTGGATAATCTTTTTCTTGTTTTAGAGTTTGATTCACTTGTTTGTGAA
ACGTGTGAAACAAAAGAAAGCAATGGGTTAATCTATTCAACCAAAGGTAA
TTAAACACTCTCGCGTTGTGTATTTCTTGTAACTAATAGTGTACAGAGGG
GTCTGACCCCTCCTCTCATTCATTGCTCCCCCCATTGCTGTTCTTAAATT
GATTCATTTAAATATACAGAGTTACCCTGGGTTATAAAAATTGGCTCTCA
AGAAGAAAAAATCTGCTCTAATTGAAAATTAAAAGTTATAACAATTAATG
AAACTACGAAAATCCCTTATGAATATCAGATAATATTGAGCAAATTTGGT
CTCTTTTCAATTCTCATTAGGCTGACCTTGTTCATACAATATTCTTATAT
TTTTTACACAAATCTCAGTCTAAATGTTCTTTAGAAAATGCGTCCACCTT
GAAAGTTCAAAACATTTACATCTGAGAAGGTCCTGTCACCCCTTTAAAGC
ATATCTTGAAAAGATGGTGGCCCCTCTTAGAGAAATTCACACTATGTAAT
AATATGCCCTTTTCTTTAAATGGAAACCTCCACATTTGCGATAACAATCC
TTCAAATTCACATTTTTTAAACATTTTTTTCAGGTTCTTGCCGTCGTTGT
AATGCTGGGCTATCAAGTATGCATAAATTTCTACAGTTTATAATGGGCTT
GCTTACCCCTATTACAAGAAGAAGATCCATAAAATGTCAAACATACAAAA
ACCCATGAAATTCTCCCCCTAAAAATTATCTTTATTGCAGAATAGAAATT
TGTTGTAAAATCCTACCCTGTCCTTGAAAACTCTCAATGATGATTTTTGC
AGTATTCTACAAACAGATATTTTAAAGCAGTTGACAGGTTTTTCGTACAG
TGAATACACAAATTTCGTGATTTATAACCTAATTCTGTTAATTAGTATGA
TCTGATTTTTTTGTTGATTATTTTAAATTCAATCTTTTTTAATTCAGACC
CTCGAATTCAACACCTGGTAAGACGTTTGCAAGGCCTTTATCTTCTGGCA
AACGAGTATATGATTGATGTGGTTCTAGATCAGGTCAAATGTGAGCTGAC
ACGACAAAGCAAACAAATTATGAATATGTATCATGCATTTGATCTGTTGG
AAACTGCGGAGGTGACACAGCTGGAAGAACTGAAAACTACATGTTTGCAT
TTCTCGAAAAGTTATTTGTCATCGTACACATTGATGAACCAATTGCTTAC
AAATAGGAAGATATCCTTAGAAACTCAACTGAGATTGAAAGGAGTATTGT
TAACATACATACTAGCAAGGACCAGCAACCCTGGAGGGTCCTATTTGAAC
GAAATGAAACAAGTTGCAGATGACTTTAGCACAATTTCCTTAGAAAAATC
TCATAAAGCTGTCCAATGATTAACGAAAAATTTATACTTCTTGAGATTGT
TTTTTTCAACTGTTTTCATTTATGGTTCAATTCGAAATTTTGTAATGAGG
AGAATTAGATTTTTTCTTTTAGTTCCAAATATCAAGTTTATTCCTGATAT
TGACTTGTAAAGCAAACGAAATAAAGAAATAAAATCCTCTGTTTCTTTCA
TATTCTCTATTGCTAAGCCATCTTAAAGATTTTCAAAACACAAACTCTCA
CCAATATTTTCTGCGACTTCTTCTTCCTCAGTGATATCAATACATTCAGT
GGGTTGTTTACCACCCTCCACCACTGGTAGTTGAGGTCCAAACATAACCG
GTGAATTGTTGTTATTATAAACTTCAGTTGAGTTTGAAACCTCTTTCATT
TCAATGTCTGCTTGCCCAAAACCACCTGGTGAAAAAACAAACAATTGACA
ATAATTTTTGAGTTTTTGATTTGTTTGAACA Coding sequence (CDS) from alignment at sc0000101:395901..398481- >TCONS_00010024 ID=TCONS_00010024|Name=TCONS_00010024|organism=Clytia hemisphaerica|type=CDS|length=3204bp|location=Sequence derived from alignment at sc0000101:395901..398481- (Clytia hemisphaerica)
ACCCTCGAATTCAACACCTGGTAAGACGTTTGCAAGGCCTTTATCTTCTG
GCAAACGAGTATATGATTGATGTGGTTCTAGATCAGGTCAAATGTGAGCT
GACACGACAAAGCAAACAAATTATGAATATGTATCATGCATTTGATCTGT
TGGAAACTGCGGAGGTGACACAGCTGGAAGAACTGAAAACTACATGTTTG
CATTTCTCGAAAAGTTATTTGTCATCGTACACATTGATGAACCAATTGCT
TACAAATAGGAAGATATCCTTAGAAACTCAACTGAGATTGAAAGGAGTAT
TGTTAACATACATACTAGCAAGGACCAGCAACCCTGGAGGGTCCTATTTG
AACGAAATGAAACAAGTTGCAGATGACTTTAGCACAATTTCCTTAGAAAA
ATCTCATAAAGCTGTCCAATGAGTTCTTGCCGTCGTTGTAATGCTGGGCT
ATCAAAGTTTGATTCACTTGTTTGTGAAACGTGTGAAACAAAAGAAAGCA
ATGGGTTAATCTATTCAACCAAAGATGAGCGAGTCAAAAGAAAACGAGAA
AATCGAAGAGCAGAAAGAGCCTGCTCGATTCACACAACCATGGAAGAATA
GTGATGTTGTTTTGGTTGCCGAAGAGAAAGAAATACACGTTCATTCAACT
ACGTTATCTATGGTTTCACCCGTTTTTGAGGCCATGTTTAATGGCAGTTT
TAAGGAGTCAAAGACTAAGAAAGTCACTCTGGAAGGGAAATCGTACGATA
CTTTAATGTACGTCATGAAGATGATTTATCCTTTTGACAACATCAAATTT
GACCCTCGAATTCAACACCTGGTAAGACGTTTGCAAGGCCTTTATCTTCT
GGCAAACGAGTATATGATTGATGTGGTTCTAGATCAGGTCAAATGTGAGC
TGACACGACAAAGCAAACAAATTATGAATATGTATCATGCATTTGATCTG
TTGGAAACTGCGGAGGTGACACAGCTGGAAGAACTGAAAACTACATGTTT
GCATTTCTCGAAAAGTTATTTGTCATCGTACACATTGATGAACCAATTGC
TTACAAATAGGAAGATATCCTTAGAAACTCAACTGAGATTGAAAGGAGTA
TTGTTAACATACATACTAGCAAGGACCAGCAACCCTGGAGGGTCCTATTT
GAACGAAATGAAACAAGTTGCAGATGACTTTAGCACAATTTCCTTAGAAA
AATCTCATAAAGCTGTCCAATGAGTTCTTGCCGTCGTTGTAATGCTGGGC
TATCAAAGTTTGATTCACTTGTTTGTGAAACGTGTGAAACAAAAGAAAGC
AATGGGTTAATCTATTCAACCAAAGATGAGCGAGTCAAAAGAAAACGAGA
AAATCGAAGAGCAGAAAGAGCCTGCTCGATTCACACAACCATGGAAGAAT
AGTGATGTTGTTTTGGTTGCCGAAGAGAAAGAAATACACGTTCATTCAAC
TACGTTATCTATGGTTTCACCCGTTTTTGAGGCCATGTTTAATGGCAGTT
TTAAGGAGTCAAAGACTAAGAAAGTCACTCTGGAAGGGAAATCGTACGAT
ACTTTAATGTACGTCATGAAGATGATTTATCCTTTTGACAACATCAAATT
TGACCCTCGAATTCAACACCTGGTAAGACGTTTGCAAGGCCTTTATCTTC
TGGCAAACGAGTATATGATTGATGTGGTTCTAGATCAGGTCAAATGTGAG
CTGACACGACAAAGCAAACAAATTATGAATATGTATCATGCATTTGATCT
GTTGGAAACTGCGGAGGTGACACAGCTGGAAGAACTGAAAACTACATGTT
TGCATTTCTCGAAAAGTTATTTGTCATCGTACACATTGATGAACCAATTG
CTTACAAATAGGAAGATATCCTTAGAAACTCAACTGAGATTGAAAGGAGT
ATTGTTAACATACATACTAGCAAGGACCAGCAACCCTGGAGGGTCCTATT
TGAACGAAATGAAACAAGTTGCAGATGACTTTAGCACAATTTCCTTAGAA
AAATCTCATAAAGCTGTCCAATGAGTTCTTGCCGTCGTTGTAATGCTGGG
CTATCAAAGTTTGATTCACTTGTTTGTGAAACGTGTGAAACAAAAGAAAG
CAATGGGTTAATCTATTCAACCAAAGATGAGCGAGTCAAAAGAAAACGAG
AAAATCGAAGAGCAGAAAGAGCCTGCTCGATTCACACAACCATGGAAGAA
TAGTGATGTTGTTTTGGTTGCCGAAGAGAAAGAAATACACGTTCATTCAA
CTACGTTATCTATGGTTTCACCCGTTTTTGAGGCCATGTTTAATGGCAGT
TTTAAGGAGTCAAAGACTAAGAAAGTCACTCTGGAAGGGAAATCGTACGA
TACTTTAATGTACGTCATGAAGATGATTTATCCTTTTGACAACATCAAAT
TTGACCCTCGAATTCAACACCTGGTAAGACGTTTGCAAGGCCTTTATCTT
CTGGCAAACGAGTATATGATTGATGTGGTTCTAGATCAGGTCAAATGTGA
GCTGACACGACAAAGCAAACAAATTATGAATATGTATCATGCATTTGATC
TGTTGGAAACTGCGGAGGTGACACAGCTGGAAGAACTGAAAACTACATGT
TTGCATTTCTCGAAAAGTTATTTGTCATCGTACACATTGATGAACCAATT
GCTTACAAATAGGAAGATATCCTTAGAAACTCAACTGAGATTGAAAGGAG
TATTGTTAACATACATACTAGCAAGGACCAGCAACCCTGGAGGGTCCTAT
TTGAACGAAATGAAACAAGTTGCAGATGACTTTAGCACAATTTCCTTAGA
AAAATCTCATAAAGCTGTCCAATGAGTTCTTGCCGTCGTTGTAATGCTGG
GCTATCAAAGTTTGATTCACTTGTTTGTGAAACGTGTGAAACAAAAGAAA
GCAATGGGTTAATCTATTCAACCAAAGATGAGCGAGTCAAAAGAAAACGA
GAAAATCGAAGAGCAGAAAGAGCCTGCTCGATTCACACAACCATGGAAGA
ATAGTGATGTTGTTTTGGTTGCCGAAGAGAAAGAAATACACGTTCATTCA
ACTACGTTATCTATGGTTTCACCCGTTTTTGAGGCCATGTTTAATGGCAG
TTTTAAGGAGTCAAAGACTAAGAAAGTCACTCTGGAAGGGAAATCGTACG
ATACTTTAATGTACGTCATGAAGATGATTTATCCTTTTGACAACATCAAA
TTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010024-exon-sc0000101-1575043694:398057..398481 | TCONS_00010024-exon-sc0000101-1575043694:398057..398481 | Clytia hemisphaerica | exon |
| TCONS_00010024-exon-sc0000101-1575043694:397686..397754 | TCONS_00010024-exon-sc0000101-1575043694:397686..397754 | Clytia hemisphaerica | exon |
| TCONS_00010024-exon-sc0000101-1575043694:397116..397148 | TCONS_00010024-exon-sc0000101-1575043694:397116..397148 | Clytia hemisphaerica | exon |
| TCONS_00010024-exon-sc0000101-1575043694:395901..396784 | TCONS_00010024-exon-sc0000101-1575043694:395901..396784 | Clytia hemisphaerica | exon |
| TCONS_00010024-exon-sc0000101-1510915933:398057..398481 | TCONS_00010024-exon-sc0000101-1510915933:398057..398481 | Clytia hemisphaerica | exon |
| TCONS_00010024-exon-sc0000101-1510915933:397686..397754 | TCONS_00010024-exon-sc0000101-1510915933:397686..397754 | Clytia hemisphaerica | exon |
| TCONS_00010024-exon-sc0000101-1510915933:397116..397148 | TCONS_00010024-exon-sc0000101-1510915933:397116..397148 | Clytia hemisphaerica | exon |
| TCONS_00010024-exon-sc0000101-1510915933:395901..396784 | TCONS_00010024-exon-sc0000101-1510915933:395901..396784 | Clytia hemisphaerica | exon |
| TCONS_00010024-exon-sc0000101-1491911889:398057..398481 | TCONS_00010024-exon-sc0000101-1491911889:398057..398481 | Clytia hemisphaerica | exon |
| TCONS_00010024-exon-sc0000101-1491911889:397686..397754 | TCONS_00010024-exon-sc0000101-1491911889:397686..397754 | Clytia hemisphaerica | exon |
| TCONS_00010024-exon-sc0000101-1491911889:397116..397148 | TCONS_00010024-exon-sc0000101-1491911889:397116..397148 | Clytia hemisphaerica | exon |
| TCONS_00010024-exon-sc0000101-1491911889:395901..396784 | TCONS_00010024-exon-sc0000101-1491911889:395901..396784 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000101 | supercontig | sc0000101:395901..398481 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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