TCONS_00010005 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00010005
Unique Name	TCONS_00010005
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3177

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000101:119146..122322-

transcript sequence

>TCONS_00010005 ID=TCONS_00010005|Name=TCONS_00010005|organism=Clytia hemisphaerica|type=transcript|length=3177bp
GAGTATGGGGTTCCGAAGGGACCCACACCCCCAAAACGTCCCCAAAACTA
CCCGCACAATACATCCCCAAATCAGCAGCCAAACTCAAAAAGAAGTCATT
ACACATTAGGAACCTAACTCTTACTAAAAGGATAACAGTCTTGGTCTTAG
TGCTTTAAAGTTTTCCCTATAGGTTATAATGAGAAAAGCCTGAGCCCATG
TATTTGATGAAGATGGCCTGAGCCTATATCCTGGTGAGAATAACCTGAGC
CCATGTCCTGATAGGGATGATTGATTTTAGTCTAAATTGTAATGAGGATG
GTTGGACTTAGTTGCCTAAGACCGTAGGGATGACGGCCTGTCGAaggact
gtaaggaggacagccaTATGAGCAAGGCAGGGTGGTCTGAATCGAGATCT
GAGGGTAAATTGTTTGAACATTTATTAAAGCAAGAGATCTGCTAAGTATA
TAATAGGATTATTTGAGAATGGTGACATAGAACTTTTAATCTAAGCACTG
TATCTCTTTGGGGTATGTTTCGGGGCAAGAAAGGGAAACAAGTCTCAGGG
TAgttaaaaccaaaaaataaaaCTACTTATTGTGAAGCCTCCATACCCAA
CTTATGTTACAGCTGTATAGAGAATAGGTGTCAAAAACCNTGAAACCAAA
AGGCAATCTACTTATTGTAAAGTCTCCAGACCTAATTTATGTTACAGCTG
TATAGAGAATAggtgtcaaaaaaaaataaaaacccatatctCAACAAGTA
AATTCCCACATGTTCATTGCTAATATAATTACCATTGAATCGTGACGTCA
TTCGACGTCACCAGGGATTATAGCAAGagaaaacaagaaagaaaagaaaa
ttatctGTCCCACTCACAAGTGAACCCAAGGTTGAATAGTAAGAAACCCA
GTTAAGACAAAATAAAACTTGACGACACAATACCAAGAGCTACCCAACCA
GTAGGTTTGCATGGGATCATAGGCTAGGATTATTACCAGTGTATCATGAC
GTCATTAGACGTCGCCAGGAATAATAgaatgaaaacaaacaaaaaaggcc
aggtgaaaaaaaaaaaaagaaaaaaaaaacaatacaaaaaaCTGCCCAAT
TTACAGGTGAACATGGGTGGATAGTTGGAAACTCaactaaaacaaaagta
aacaTGAGAGCACAGAAACCCAGGGCTATCCAATCAGTAGATTCCCTAAA
AGTTCATAGGCTAAGTAGTTACCAATGTATCATGACGTCATTGGACGTCG
GCATGAGTGATAGGATGAAAAAAGAAGGGTGAAAAACAACTGTCCAACTT
ACAGGTGAACTCTTGGGTGGATAGTTAGAAACCcagttaaaaacaaaagt
aatACATGACAACACAGAAACCCAGGGCTATCCAATCAGTGGGTTCCCAA
AAGTTCATAGGCTAAGTAATTACCAATGTATCATGACGTCATTGGACGTC
GGCATGAGTGATAGGATGAAGAAAAGAAGGGTGAAAAACAACTGTCCAAC
TTACAGGTGAACTCTTTGGTGGGTAGTTAGAATCCCAGTTAACAACAAAA
GTAAAACATGACAACACAGAAACCCAGGGCTATCCAACCAGTAGGTCTCC
AAAAGTTCATAGGCTAAATAATTACCAATGCATCATGAGGCCATTGGACG
TCAACAGGGATGATAGGATGAAGAAAAGAGAGGTGAAAAACAAATGCCTA
ACTTAAAGTGAGCTTATGGGTGGATAGTGAGAAACCCAGTTAAAAACGAA
AGGTGAAACATAACACTCAAACCCAGGGCTATCCAACCAGTAGATTTCCC
AAAGGTGCATTTACAAGCTGAAATAATTACCAATGTATCAACCAACACCA
TTGGATATCAACAGGGATTAAAGAAGGGAGAACAAATGAGGTGAAAAACA
ACTGCCCGACTTGACAAATGAACCCATGGGTGGATAGTTAAAAACCCCAG
TTAAAAACAAAAGGGTAAAAgatgatacacgctttttttttttataagaa
tacactttataagaatgtccatgatgaaaatggccaaaaaattaagaata
tggtaagaatatcaccatcatgGAATTTAGCAActaaacctaagaatgcc
atttttaatgcattttaacctgtagattgccgatttcgatcttaacctaa
gaataccgtaagaatattttcggatgatttttgccaaaaagttaagaata
tccatgatgaaatgaaaaaacaccattcttataaaaaaaaaagcgtgtaa
cacATGAAACCCAGGGCTATCAACCAAGGCTTCCAAAGGTTCGTAGGCTA
GAATAATGAAATGGCTAATGTATCAGCGTCATTGGACATTACCAGGGATT
AAAAGGAAGGGAAAAACAAAATGGGGTGAAAACAACTGCCCGACTTACGA
TATATGAACCCATAGGTGGATAGTTAGAAGCCCCCCAGAGaaatgaaaga
caaaaattGCAACTTGAAACCAACAAAGCAAGGGTACGCAAACCTAATGT
GGTTCCTTTCCACGACTAAGATTGCCCATGTGCCATGACCAGCAAAACAA
ACTCAGGGACGTACACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
ATTTGAACTTACAAGACTGTTCACttaactttccattttgttGAAAGACC
ATCCAAGGAAGAGAGTGAAGACAGGTGCATCTGGGACTGTGACTTCGAGG
AGAACGAGTACGCAAGTAACAAACGTGTGTGGATGGGAGCTTCTATTCTT
GGATTGGTTGTCATCAGTCAGCAatgtttattgtttttgaaggaattcaG
CAGTAGAGTAGCCAACAGCACATAGAGTGTAAGGTAAGGACCAGCAGAAC
AGACATCCATCAAGAGTTCTTGATTTATTTAATTAACTATCAGGACTTTT
CTTTGACACTTGAAAACATGGTCTTGGGTCTGCTGCACATGTCATCCCAA
AATTGAAAACACAAGAATAAGAAAGGCTAAGCGTGGTTTCACTCCCGTAT
AAATAGTGATACTGGGATTTGAGCAATGGCTTCTAGAGTGCGTAGCATGA
TGGCGGAAGGGTGTATTGCGGGCGTTAATTTGTCTTCCTTAAAATTAACC
TAACCTAACTAAAGTTagctctaattt

Run BLAST on NCBI

transcript from alignment at sc0000101:119146..122322-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00010005 ID=TCONS_00010005|Name=TCONS_00010005|organism=Clytia hemisphaerica|type=transcript|length=3177bp|location=Sequence derived from alignment at sc0000101:119146..122322- (Clytia hemisphaerica)
GAGTATGGGGTTCCGAAGGGACCCACACCCCCAAAACGTCCCCAAAACTA
CCCGCACAATACATCCCCAAATCAGCAGCCAAACTCAAAAAGAAGTCATT
ACACATTAGGAACCTAACTCTTACTAAAAGGATAACAGTCTTGGTCTTAG
TGCTTTAAAGTTTTCCCTATAGGTTATAATGAGAAAAGCCTGAGCCCATG
TATTTGATGAAGATGGCCTGAGCCTATATCCTGGTGAGAATAACCTGAGC
CCATGTCCTGATAGGGATGATTGATTTTAGTCTAAATTGTAATGAGGATG
GTTGGACTTAGTTGCCTAAGACCGTAGGGATGACGGCCTGTCGAAGGACT
GTAAGGAGGACAGCCATATGAGCAAGGCAGGGTGGTCTGAATCGAGATCT
GAGGGTAAATTGTTTGAACATTTATTAAAGCAAGAGATCTGCTAAGTATA
TAATAGGATTATTTGAGAATGGTGACATAGAACTTTTAATCTAAGCACTG
TATCTCTTTGGGGTATGTTTCGGGGCAAGAAAGGGAAACAAGTCTCAGGG
TAGTTAAAACCAAAAAATAAAACTACTTATTGTGAAGCCTCCATACCCAA
CTTATGTTACAGCTGTATAGAGAATAGGTGTCAAAAACCNTGAAACCAAA
AGGCAATCTACTTATTGTAAAGTCTCCAGACCTAATTTATGTTACAGCTG
TATAGAGAATAGGTGTCAAAAAAAAATAAAAACCCATATCTCAACAAGTA
AATTCCCACATGTTCATTGCTAATATAATTACCATTGAATCGTGACGTCA
TTCGACGTCACCAGGGATTATAGCAAGAGAAAACAAGAAAGAAAAGAAAA
TTATCTGTCCCACTCACAAGTGAACCCAAGGTTGAATAGTAAGAAACCCA
GTTAAGACAAAATAAAACTTGACGACACAATACCAAGAGCTACCCAACCA
GTAGGTTTGCATGGGATCATAGGCTAGGATTATTACCAGTGTATCATGAC
GTCATTAGACGTCGCCAGGAATAATAGAATGAAAACAAACAAAAAAGGCC
AGGTGAAAAAAAAAAAAAGAAAAAAAAAACAATACAAAAAACTGCCCAAT
TTACAGGTGAACATGGGTGGATAGTTGGAAACTCAACTAAAACAAAAGTA
AACATGAGAGCACAGAAACCCAGGGCTATCCAATCAGTAGATTCCCTAAA
AGTTCATAGGCTAAGTAGTTACCAATGTATCATGACGTCATTGGACGTCG
GCATGAGTGATAGGATGAAAAAAGAAGGGTGAAAAACAACTGTCCAACTT
ACAGGTGAACTCTTGGGTGGATAGTTAGAAACCCAGTTAAAAACAAAAGT
AATACATGACAACACAGAAACCCAGGGCTATCCAATCAGTGGGTTCCCAA
AAGTTCATAGGCTAAGTAATTACCAATGTATCATGACGTCATTGGACGTC
GGCATGAGTGATAGGATGAAGAAAAGAAGGGTGAAAAACAACTGTCCAAC
TTACAGGTGAACTCTTTGGTGGGTAGTTAGAATCCCAGTTAACAACAAAA
GTAAAACATGACAACACAGAAACCCAGGGCTATCCAACCAGTAGGTCTCC
AAAAGTTCATAGGCTAAATAATTACCAATGCATCATGAGGCCATTGGACG
TCAACAGGGATGATAGGATGAAGAAAAGAGAGGTGAAAAACAAATGCCTA
ACTTAAAGTGAGCTTATGGGTGGATAGTGAGAAACCCAGTTAAAAACGAA
AGGTGAAACATAACACTCAAACCCAGGGCTATCCAACCAGTAGATTTCCC
AAAGGTGCATTTACAAGCTGAAATAATTACCAATGTATCAACCAACACCA
TTGGATATCAACAGGGATTAAAGAAGGGAGAACAAATGAGGTGAAAAACA
ACTGCCCGACTTGACAAATGAACCCATGGGTGGATAGTTAAAAACCCCAG
TTAAAAACAAAAGGGTAAAAGATGATACACGCTTTTTTTTTTTATAAGAA
TACACTTTATAAGAATGTCCATGATGAAAATGGCCAAAAAATTAAGAATA
TGGTAAGAATATCACCATCATGGAATTTAGCAACTAAACCTAAGAATGCC
ATTTTTAATGCATTTTAACCTGTAGATTGCCGATTTCGATCTTAACCTAA
GAATACCGTAAGAATATTTTCGGATGATTTTTGCCAAAAAGTTAAGAATA
TCCATGATGAAATGAAAAAACACCATTCTTATAAAAAAAAAAGCGTGTAA
CACATGAAACCCAGGGCTATCAACCAAGGCTTCCAAAGGTTCGTAGGCTA
GAATAATGAAATGGCTAATGTATCAGCGTCATTGGACATTACCAGGGATT
AAAAGGAAGGGAAAAACAAAATGGGGTGAAAACAACTGCCCGACTTACGA
TATATGAACCCATAGGTGGATAGTTAGAAGCCCCCCAGAGAAATGAAAGA
CAAAAATTGCAACTTGAAACCAACAAAGCAAGGGTACGCAAACCTAATGT
GGTTCCTTTCCACGACTAAGATTGCCCATGTGCCATGACCAGCAAAACAA
ACTCAGGGACGTACACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
ATTTGAACTTACAAGACTGTTCACTTAACTTTCCATTTTGTTGAAAGACC
ATCCAAGGAAGAGAGTGAAGACAGGTGCATCTGGGACTGTGACTTCGAGG
AGAACGAGTACGCAAGTAACAAACGTGTGTGGATGGGAGCTTCTATTCTT
GGATTGGTTGTCATCAGTCAGCAATGTTTATTGTTTTTGAAGGAATTCAG
CAGTAGAGTAGCCAACAGCACATAGAGTGTAAGGTAAGGACCAGCAGAAC
AGACATCCATCAAGAGTTCTTGATTTATTTAATTAACTATCAGGACTTTT
CTTTGACACTTGAAAACATGGTCTTGGGTCTGCTGCACATGTCATCCCAA
AATTGAAAACACAAGAATAAGAAAGGCTAAGCGTGGTTTCACTCCCGTAT
AAATAGTGATACTGGGATTTGAGCAATGGCTTCTAGAGTGCGTAGCATGA
TGGCGGAAGGGTGTATTGCGGGCGTTAATTTGTCTTCCTTAAAATTAACC
TAACCTAACTAAAGTTAGCTCTAATTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005613	XLOC_005613	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00010005-exon-sc0000101-1575043694:119146..122322	TCONS_00010005-exon-sc0000101-1575043694:119146..122322	Clytia hemisphaerica	exon
TCONS_00010005-exon-sc0000101-1510915933:119146..122322	TCONS_00010005-exon-sc0000101-1510915933:119146..122322	Clytia hemisphaerica	exon
TCONS_00010005-exon-sc0000101-1491911889:119146..122322	TCONS_00010005-exon-sc0000101-1491911889:119146..122322	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000101	supercontig	sc0000101:119146..122322 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.47086	0.327553	0.679656	0.773718	3.85308	1.94467	4.17775	4.9253	1.34314	3.34071	1.85656	1.21043	0.95567	1.15631	0.727968	0.356439	0.803118	0.354391	0.252549	0.558111	0.979955	0.949099	0.415271	0.573985	2.91078	3.71639	0.78807	0.567892	0.534662	0.606372

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00010005 vs. Swiss-Prot (Human)

BLAST of TCONS_00010005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00010005 (transcript) - C. hemisphaerica