TCONS_00009999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009999
Unique NameTCONS_00009999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009999 ID=TCONS_00009999|Name=TCONS_00009999|organism=Clytia hemisphaerica|type=transcript|length=1460bp
TGTGTGTGTGTCATCACACAGCTCGTTTTTGAAAGCACAGAGGATCTAAA
ACATGAGATAAACATGGTTTCCTTATCTCGTTAAAATCTTGGTCTGTCAA
TGTCATAGATTCATTTCATATTGACATGTTTAACTGATATGTTCTGAGTA
TAttaacatttttgatttttttggacaaaaaaatgtGGCTTATTTTTGGG
GTATCCATTTTTCTGCTCAAACTTCCATCATGTCAAACCCTCCCAATGTT
AGGGTCTTGTTTCGTCAACGGTATCGTCTCACCTAGCATCTCGCGTGCGA
ATAGCGTGACTTTTTGTAGCAATGCAGATGGTGGTTCAAGTTTGTTATTT
GGTCGCTTTACCGGCAACGACTTTATTGATATATTTTGCCACCGCAATTC
GACCGGAGGAATGACGTTGTTCAACATGAACTCCATCCAGGTGTTGAGTA
TTGCACGGACTTTCTGTGAAGGAGGGTGGAGATTAATGACCGCTGATCTC
AACGGTGATTCGAACCAAGATTTAGTATGCTTACGAGCGGACGGAAGTGT
CAGCTACTTGTTAAACACAGATGGAGGAACATTTTTGACAGcGGCCGAGC
AAAATATCAATGCATCGTTTACGTGTAACAAGACCCTAATATTTGGTGAC
ATCAACGGCGATAACAAAGACGATATTGTTTGTCAAAATGAAGATGGAAT
CATCCACTTTGCTTTGACTAACTCATCCAATTTAGCAACGGGTTTGTTTA
CATCACAACAGACATTTCCAACGAGCTGGTGTAATGGAACAATGGATCAA
ATTATGAAAGGTGACCTGAATGGAGACGGTAAGATTGATCTTTTGTGTCA
CGCCGAGCGAACTTATTTGAGGAGCGCGCTCATTTCTTCGGGAGCAAGTT
TTGAAGAAGAATTATTTGAGATGGAGTTGGAAGTGTGTGGCGATGAAAAT
CAATTTCTATTAGTTCGTGATATCAACGGTGACGGATACGCTGATCTGGT
CTGTAAATCTTCCGACCTCACTGGTACCACTAAAATCATCCATAACAAGC
CTGGtgaatattttacagaccagtctgtaCGCAATGAGTTCCGTTTTTGT
GTAAATGGTGGACCGACAAATTTTTATGTGGAAGATGTGAACAGGGATGG
CTTTGATGATTTGGTTTGTCAGACCAGCATCGCAAAAAGATATATCTTCA
TCAGTCGATGCTACTTTTAAAATCTAACACTTCTATCAATATAAACATTT
GAAAGacttaaaatttcgaaaagtaATACAGTCCCAAAAATTGGTTTCTC
TCTTTGATATGAAGtgaattttaaaagttgaaCCTTTTGGAAAGGGAATA
TATAAACTTAAATTGATGGGTTGTTTATCGATTGGGCCATTACATCAAAT
GTTACGATTCTGCAGTTACATTGGTTTCTTTGCTCACTGAGAAGTCATTT
TGATCATaat
Run BLAST on NCBI

transcript from alignment at sc0000101:506625..512386+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009999 ID=TCONS_00009999|Name=TCONS_00009999|organism=Clytia hemisphaerica|type=transcript|length=5762bp|location=Sequence derived from alignment at sc0000101:506625..512386+ (Clytia hemisphaerica)
TGTGTGTGTGTCATCACACAGCTCGTTTTTGAAAGCACAGAGGATCTAAA
ACATGAGATAAACATGGTTTCCTTATCTCGTTAAAATCTTGGTCTGTCAA
TGTCATAGATTCATTTCATATTGACATGTTTAACTGATATGTTCTGAGTA
TAttaacatttttgatttttttggacaaaaaaatgtGGCTTATTTTTGGG
GTAAGTTGATATTTGTAAATCGCGATAAATatccattttgttttgttttg
ttgttaacATACCGCAAACCTAGTAGCTTTCAAATTGATTTAAAGCCACC
AGCTAAAAAGAATCTACACTTGGAGTACGTGGTTTCCATTATCTCATTAC
AGTTTTCATTAAGTcttttcaaaactgaaaatcaGTTCCAATACTGAGGC
AAGTAATGTAGCCTAGAAACCACTGAACAcctccaaaattgaaatatccc
agacggcacacaacgtcaaatcaacgtccatgtgacattcataacgtcca
aataacgttatttgaacgttaaaacaacgttgtgtgccagctgggatcta
ATGAAATAAAGTAGAAGTACTAAAATCACAATTCTTgcccgagctttaaa
ttctgcgaaaacgttaaaatacccaaaatatctcaaacttGATTCTAATT
AAAACTTGTACTCTCTTTTTTTTAACAGGTATCCATTTTTCTGCTCAAAC
TTCCATCATGTCAAACCCTCCCAATGTTAGGGTCTTGTTTCGTCAACGGT
ATCGTCTCACCTAGCATCTCGCGTGCGAATAGCGTGACTTTTTGTAGCAA
TGCAGATGGTGGTTCAAGGTAATCTTTGATGTTATTCTTCGGAAATTCAT
GCAGTGGAGTTAGTCTCTTTAAATCGAACATCtgtaaatttttcattcac
AACAATACCTTATAAATAAACCCCAAgtttccttaattcgaacaaatttg
tgtttcccgtgcgtgttcgagttacggagactcCACTGTGTTTCGTTTTG
CGTGTATGTAATTATGGATGGTTAAACGGCCTAGTTATTCTCTAGAAATC
CGAATTTCTATGGATCAATTCGAATGGATTCTTTGTAAACAGTCTCGTCC
CGTGTATCCTGTAtttcaggctttatttacgttactgatggacgcTAGAG
ATAATTACCTGGCGTTATCAGTAAGCATCGGAAAGGCGATAATGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaa
aaaaaacatgtagtacgtacgcactaaggggggaggggggtcttctcaaa
agcgtatgcttgcgtacaggggggaggAGGGGTCAAaagaaaatgtacgt
acgcagagaaaattttttcatagcctcttttcgcttgttttttgtcgact
tttacgcttgttatacgcatcaaggaaaagttgataaacattgagtttca
tgtatgaaataaaggtcggaaccaaacgatttgaattcgaaattttcttc
aaccgagggggggtgaatgaaaaagtacgtaatTACCAGAGGAGGGTATA
GCCaattgcgtacagggggagggatTCCtcaattttcgacattttagtgt
gtacgtactatgtggacggcccccgCCCCAGAGAGATAAAGCTCGAATCA
AAGGTCGAAAGAATCCTTCTGTAAAACTTTCCATAATTACTGCCTGTACA
CCTTTTTTTCAGTTTGTTATTTGGTCGCTTTACCGGCAACGACTTTATTG
ATATATTTTGCCACCGCAATTCGACCGGAGGAATGACGTTGTTCAACATG
AACTCCATCCAGGTGTTGAGTATTGCACGGACTTTCTGTGAAGGAGGGTG
GAGATTAATGACCGCTGATCTCAACGGTGATTCGAACCAAGATTTAGTAT
GCTTACGAGCGGACGGAAGTGTCAGCTACTTGTTAAACACAGATGGAGGA
ACATTTTTGACAGGTAATCCACTGAATCCAAACATTTCTGAAGAGTTTTC
ACCTTTTCGAATGGAAAGTTTGAGCCTTTTAGAATATGAGGTCAGAAAAC
AAAGTCTCACAGAAATAGTGCAGTCAAATCTTTTCTACATCCTTGTCTCG
TTGATCTGGTGAGAATTTACTAATAGGATATAGAATGAAGGTTCTGGATG
CCAATGGGGCTGAATAATGAATTTTATCTTGTGTTTAGTTGGTGGCGGGA
ACTTCAAAATTCTATTGTGTACAGTTCAAACTtacaattttaattaaaaa
actttGCTATCTTTCCTGGCGAGGATAGGCCTTGAAAATGGGATTGGATT
TTTATCACCTGGAAGAGTTTTTCAGGATGAAGGGGTCCGATcttttgtga
cacaggggtgttttctcTGACTAAAAAAAGTACCCGGACAGAACTTTGAC
ATAGATGTGGgtctttttcagaaattgatcatttcttttatgaaatcggc
atttttttctttcacagcGGCCGAGCAAAATATCAATGCATCGTTTACGT
GTAACAAGACCCTAATATTTGGTGACATCAACGGCGATAACAAAGACGAT
ATTGTTTGTCAAAATGAAGATGGAATCATCCACTTTGCTTTGACTAACTC
ATCCAATTTAGCAACGGGTTTGTTTACATCACAACAGACATTTCCAACGA
GCTGGTGTAATGGAACAATGGATCAAATTATGAAAGGTATTTACTTGGTT
TCCCTGTCAACTGACATACCATAATTAGTGTCAAGGGGGCATACCATAAT
TAGTTGCGATGGGATAATTTTGAcaacttttcttttatttatcgcgcaat
ttttcaTACActaaatatttttccttttaatCCCATGCTAGAGATAAAAC
TTTATCAAGCCATTCAAGAAAGTACAGTTGGCATTGATTTACCGTAGCCT
TACCCCGCGGAAAAtttggtatttctatttttacGTTTTCTTTGTGGGAA
AACAATATGATATGCCAATAAATGCCAGGAATATGACAAAGCAACTGTCA
AGTTTGTTTTTCACTGATTGCGAAATGTGAAGCGCGTATAAAGTTTGTTT
TCAGTGTCGAAAGTAAGAGTCTGACGTAAAAAAACACTGCTTTTGAACCG
TGAATTTATTCTCTTCATGAAATTAAGCAAAAAAGCAGCTGCTTTTGTGA
CAGACCCCAGTCCGCTCAAAAATCCAGTAAGAATTCTTTCTGGGATGGCT
TTCCCAGTGGATTTCTAACTTTGAAGTTTGAAGAATTTCCGATGACCAGC
CTATTTTCTCACCGGGACGATTTCTGGCTGATTTCTTTTCAGTGAGAAAA
GAGGGTCCCATGGGGTCTTTCacaaccggttgggaacagtaattttgccg
gaaaaccggtttttaggcctacagagccgtctggGCATATATGAACCCTC
TTTCTCTTAGGTGACCTGAATGGAGACGGTAAGATTGATCTTTTGTGTCA
CGCCGAGCGAACTTATTTGAGGAGCGCGCTCATTTCTTCGGGAGCAAGTT
TTGAAGAAGAATTATTTGAGATGGAGTTGGAAGTGTGTGGCGATGAAAAT
CAATTTCTATTGTAAGTATTGTAAGTTATGATATGTTGTTAACCGTTTAC
TATTTCGAATAGGGTTacacgactttttgcgcaatgcaattggttctttt
cgcatgacgacgggcctacactgcccagagttgcccgtcgttaggaaaat
ttattgtgacgtcactttttcaaaggaaaatgaacaacgCGTTGatatca
tttctctcatttttttatttcctcGGTCAaagcaacaacctcgcaagctt
ggtcgttacttgaccttgGGCAATATTTCTCTGCCCTccctaaccggtca
ttattgtattaataacattagcagaaaaaaaacatcatctTTTTAACGAA
CAATTTCAGCCTCTGGTTCTTTAAACAATATGTCTGGGAAAGAcgactga
aaaaaataaagatttgtgTGAATTTCtgacatgaaaaatgaaaacaaatg
atgtcaacgtagtgttcattttctttgaaaataattggcgtcacaatgaa
ttttcttaACAACGGGCACATCGTGCTATGTAAGCCCGTCGTCATGTGAA
AAGAACCAATCGCGTTGCGTAAAAACTCGCACAGCCCgcacaaaaaataa
caataattaataatataatttttagcagattaagaataattttttttcca
aaacttcaCCTACACCTATATTCACCTACATTTATAGTCAACAAGCTAAC
GGTCAAATTTGGATCAATGACCTCCTTACCGGAcataatatttacaaaaa
tattctaaattcTATGTCAAATAGAAGTTTCCATTTCAACAAAGTCCACC
ACTTTTAAACCAAAATAGCCCAAATTATATCATCAATAGCTATCATTTCC
CGCCAAGTTTTCTCCATAACTCAACTGGAATAATTATTACTTTCCCTTGT
CGTTCGAGTTGTTAGACTCAACTTTATTTATCACGGAGACTTACCATAGT
TTTGCATACATAAGATTTCTTTTCCCAAGATTCTCCAGCCACTTTTCTAC
TGGAAAAAGACCAGAACTCCGGGTAGCTGAGAAATGATcttcggaaagtt
aggcagtttcgtgagtaaacacaagattttccgtacctttagaagaaaat
cctttccaatctcatgccggtTATCCCGGGAAAAATACGTGGAAAAAACC
CCGGAATAGTGGCAAATCAATCTTAATGCGAGAATtggaatcttatgcaa
aacgacggcacgcgtttttttataagaacaaactatataagaacataagg
cttcgcagactagaaaacacccaatttcttagaaaaattgacaaaaatag
tcaaaaaatgaattgtttgaatgttcttataaagaaaacgtatATTCTAC
TGTCATTTTTTAGAGTTCGTGATATCAACGGTGACGGATACGCTGATCTG
GTCTGTAAATCTTCCGACCTCACTGGTACCACTAAAATCATCCATAACAA
GCCTGGtgaatattttacagaccagtctgtaCGCAATGAGTTCCGTTTTT
GTGTAAATGGTGGACCGACAAATTTTTATGTGGAAGATGTGAACAGGGAT
GGCTTTGATGATTTGGTTTGTCAGACCAGCATCGCAAAAAGATATATCTT
CATCAGTCGATGCTACTTTTAAAATCTAACACTTCTATCAATATAAACAT
TTGAAAGacttaaaatttcgaaaagtaATACAGTCCCAAAAATTGGTTTC
TCTCTTTGATATGAAGtgaattttaaaagttgaaCCTTTTGGAAAGGGAA
TATATAAACTTAAATTGATGGGTTGTTTATCGATTGGGCCATTACATCAA
ATGTTACGATTCTGCAGTTACATTGGTTTCTTTGCTCACTGAGAAGTCAT
TTTGATCATaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005609XLOC_005609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009999-exon-sc0000101-1491911889:506625..506824TCONS_00009999-exon-sc0000101-1491911889:506625..506824Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1510915933:506625..506824TCONS_00009999-exon-sc0000101-1510915933:506625..506824Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1575043694:506625..506824TCONS_00009999-exon-sc0000101-1575043694:506625..506824Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1491911889:507303..507442TCONS_00009999-exon-sc0000101-1491911889:507303..507442Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1510915933:507303..507442TCONS_00009999-exon-sc0000101-1510915933:507303..507442Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1575043694:507303..507442TCONS_00009999-exon-sc0000101-1575043694:507303..507442Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1491911889:508687..508937TCONS_00009999-exon-sc0000101-1491911889:508687..508937Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1510915933:508687..508937TCONS_00009999-exon-sc0000101-1510915933:508687..508937Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1575043694:508687..508937TCONS_00009999-exon-sc0000101-1575043694:508687..508937Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1491911889:509442..509660TCONS_00009999-exon-sc0000101-1491911889:509442..509660Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1510915933:509442..509660TCONS_00009999-exon-sc0000101-1510915933:509442..509660Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1575043694:509442..509660TCONS_00009999-exon-sc0000101-1575043694:509442..509660Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1491911889:510385..510535TCONS_00009999-exon-sc0000101-1491911889:510385..510535Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1510915933:510385..510535TCONS_00009999-exon-sc0000101-1510915933:510385..510535Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1575043694:510385..510535TCONS_00009999-exon-sc0000101-1575043694:510385..510535Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1491911889:511888..512386TCONS_00009999-exon-sc0000101-1491911889:511888..512386Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1510915933:511888..512386TCONS_00009999-exon-sc0000101-1510915933:511888..512386Clytia hemisphaericaexon
TCONS_00009999-exon-sc0000101-1575043694:511888..512386TCONS_00009999-exon-sc0000101-1575043694:511888..512386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:506625..512386 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.43276	0.988468	2.70812	2.51675	0.273393	0.216039	1.79067	0.976037	0.683347	1.21437	0	0.135017	0.539317	0.84013	0.185284	0.247076	0	0.468157	0	0.157732	3.13617	3.15504	263.826	252.959	10.8831	7.18756	132.598	187.111	2146.77	2190.62
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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