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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009997 ID=TCONS_00009997|Name=TCONS_00009997|organism=Clytia hemisphaerica|type=transcript|length=2128bp
ACGagatattcttcttttttttgagagaacaaaaaaatacaaaaacgcAA
TGAGTCTGTCGCAACTGTCACCAGAACTGGTGGAAAAAGCAAAAGTGGAA
TTAAATGAGGACCCAGATACTCGaatgaacttcatccaagaattgcgtga
aaaatcaaaaacaagacAAGATTTACGAATCGAGCAAGCTGATAAAGATT
TAATCAAATTCTTACGCGCGCGGAAGTTTGATTTAGACCGCGCGTTCGAT
CTGATGGTGACGTACTATGAATCGAAACGAGATATGAGTGACTTGTTCAC
CAACTACAGTCCTTCAGGGGAGATCAAAGCATTCGAAAGTGGTTTCAGTA
TCGGCTTCAAAGACAGAGATCAAGAGGGGCGAAAGATTTTCGCGTTCCGT
CCAGGAATGTGGGAGCCAAGTGAACGAACCTTGCTGGACAATCTGCGTGC
CAATTTGATTGCCATTGAGATGCTgcttgaagaagaagaaacgcAAATTT
GTGGAATCGTCATTATTGGCGATTTCCGGGGGTTTGGGTTCAAACAAGCG
AAAGCAATGTCGCCGTCCATCTTCCGTAGTTATGCTAACGTTTTGTTGAA
CTGTTTCCCCGTTCGAATCAAAGGGATTCACGTCATCGAGCAACCAAGGA
TTTTTACCATTGTTTTTGCTATTGTTTCACAATTCATGAAAGAGAAGTTG
CGGAAACGTGTTTATTTACATGGTTCGAACATTGTTGGAATGCATCAACA
TATTGCAAAGTCTATTTTACCGAACGATTTTGGAGGTGATAATTCACCGA
CTGATGTTCAAGAATGGttaaggtttgttttgaatggTGAAGAAGAGTAC
CAACACCTCTGGATGTAAATGTCtctgtgtgtattttacagaatggTTTT
GTAATTCAccgaacattttgaaattttaccgaACAGGCCCCTAAAAGTGA
AAGGTGATTGAAAGTTAATACACATTTGTGGATATTTCACCGAATGGTTT
GTAATTTGCAGAACGGTTTCGAATTATATGAAAGGAGGCTTCAAAAGGTT
GTAGGGGATTGATTTTCAATGTTTGTATATTTGTGGTGATTTCGAAATTT
TATACAGTTagccctctctaattcgattttcaagggaccaACAGCATTAT
TCGAAATAGAGAAAAATCTGAAttataaagtctgtctcaatataatctgc
agcggagacaaaaaaggctttaacttttgatagaattcgaattagatagc
ggttttgtgcttgttgaaaagattagCAGGAGTGGAATATCgtcataaag
aaaaaaaaagatcgggaaatgaagattgaaatgaagaagaagaaaatcaa
cttcttcaataattggGCTGTAATTATCATTTCCACACGAGGAATTCTTT
GTTCTTAGAACATCATTAGTGTGAAATATATTCCATCGAAAGATATAGTC
cactgattgacttcaaaaaccataaaaaggagccttttttaagtcaacca
gggcaaagttttaagctgtattATTTAACTGAATGAAtaatgtttgaatt
ttttttcgcgtttATGACGTTCTAATATTAAAGAATTTCTGATACAAAAA
TAATaagatcatagcattattctaagaagttgattttcttcttcttcatt
ttttcattttcgtttttccaTTCTTTAAATTGATTtcctttttgataata
ttccactccaaattatctttttaacgagcacaaaaccgctatcaaattct
atcaaaagttgcagcttttttttgtctccgctgcaaattatattgagaca
gacttgaGGGAGTAATTTAAGGACacgtttttttttgactgtaccaaaat
gccgattttcaaccaacccggttcaaatcggcactaacagagacagctga
accctttcttatcgttattcaaaaataaaaaaatagattaGTAGCTCTGT
CCGATACTTTTTGTCCGATCTTAATAGCTTTTATGGAACTTAAGATATTG
TTTGTTGAAtccggagtatttcaggatgaaaaaaatcatagtctATTTCG
GATTTATAAAGTCGGCTCTATATTTTGCCTTTGTCGTGTCCAATTTATAT
ACGAAACTTATATCAGGGTGTAGCTAAA Run BLAST on NCBI protein sequence of TCONS_00009997-protein >TCONS_00009997-protein ID=TCONS_00009997-protein|Name=TCONS_00009997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
RDILLFFERTKKYKNAMSLSQLSPELVEKAKVELNEDPDTRMNFIQELRE
KSKTRQDLRIEQADKDLIKFLRARKFDLDRAFDLMVTYYESKRDMSDLFT
NYSPSGEIKAFESGFSIGFKDRDQEGRKIFAFRPGMWEPSERTLLDNLRA
NLIAIEMLLEEEETQICGIVIIGDFRGFGFKQAKAMSPSIFRSYANVLLN
CFPVRIKGIHVIEQPRIFTIVFAIVSQFMKEKLRKRVYLHGSNIVGMHQH
IAKSILPNDFGGDNSPTDVQEWLRFVLNGEEEYQHLWM Run BLAST on NCBI transcript from alignment at sc0000101:497851..501778+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009997 ID=TCONS_00009997|Name=TCONS_00009997|organism=Clytia hemisphaerica|type=transcript|length=3928bp|location=Sequence derived from alignment at sc0000101:497851..501778+ (Clytia hemisphaerica)
ACGagatattcttcttttttttgagagaacaaaaaaatacaaaaacgcAA
TGAGTCTGTCGCAACTGTCACCAGAACTGGTGGAAAAAGCAAAAGTGGAA
TTAAATGAGGACCCAGATACTCGaatgaacttcatccaagaattgcgtga
aaaatcaaaaacaagacAAGATTTACGAATCGAGCAAGCTGATAAAGTAA
GTCAATTGCAGCATATAGGATACAGTGTGTTCCAAAACAGCGGATTcgtt
tttatataaagtaaaatcttcataatttatgccaaattttatgacttgta
tatttaatatttcaatctcaaaaccTATTCAATCCTCTTCAGAATCGAGT
ATCTATTGATTGAACTGAAATTTGTGCGcttatttcaattattctaatcc
cattttagaaaaatgagtttcgaggattttactttccataaaatttgtcc
gctttttttgggacacactgtatttcCAACCTCGTTCCCGTGTATCCTAG
TGTATGCCAGGTTTTATTTATGTTTCTGATTAACGTCAGAGAATATTATA
TATGCTTTTTAACTGGCTAACCATTAAGAGACGTAATGTGCTATTTTTCA
ACTCCTTGGTATGGAAATTTAAACATCTGCCACAGTGCTACCATTGAGTT
TTAAGGCTAAAGGGGTAgcggcgagactcctggatgggaaatgaagccac
ttttttcccatccagaacgccagtgcgtagtttttacacaaacgccggat
tgaaactaaaatctatcgctaaaTTAAAAAAGTCcacgaaaacaaaggaa
ccgctaaaTATAATCCGTCGttatgattacggcgcgttctatgggCGTTT
TGGTTGGGAAATacgtggcttcaatttctcttgactgagaagggttaaag
tttcgcctctagccttTGGGATTGAAACTTAACGAGTGCTACAGTACAGA
TGAATGAATAATATCTCCAATTTCGTGCGGTCAGCTGAAGGGTAAAATTC
TTTATAGAGACGTTCATGAACATTGAATTGTTTTGAGCTACTAGTTCACA
TGTGTTGTgttgagaaatttgaaatgcaAGGAAggatttcatttttgttt
tcatcaagTTCTTGTTAACAAAGTATGGGAAGTTTTGTTGCTGAGAATTT
ACTTTTCAAGTTTGTaatataaaatttcaatttatttgCTTTTAGGATTT
AATCAAATTCTTACGCGCGCGGAAGTTTGATTTAGACCGCGCGTTCGATC
TGATGGTGACGTACTATGAATCGAAACGAGATATGAGTGACTTGTTCACC
AACTACAGTCCTTCAGGGGAGATCAAAGCATTCGAAAGTGGTTTCAGTAT
CGGCTTCAAAGACAGAGATCAAGAGGTTTGGAATAaagatttttcatgtt
ttgttaaattacgtaatttccgccatcaTGAAAGTAAatgttcgaatctg
tagaggtgatcacttacgcaaatcgaacgtttgcttccataatgtgGGAA
GTTACATAacttaaaacatgaaaaacctctatacATTTATTAAATCTAAG
GCTATGAAAAGATAGTGTTGGACTTAATCAAATGTCTGTATATATAAAGA
GTCTTTTCCGCCTCAAAACTCTACATAATCCTCCAACATTTCAAGATGTT
GTGCTattttgctgtgtaaaatccatttttagaAGGAATATCTTGCTTTA
AGCACTAAAAAATGGAACAAACTCTGATAAAATGGCTTCGTTTGACCGTG
ATTCACTTGAACCCAACCCCTTTTTCAAGCAGGATTTCATGAATTGGATG
GAAGGTTTCTCTTAACATTTGAAAGAGAAGAATTGGGTTTCATTTTGAGT
AATATGAACGACTTTAAGAATCTTCTTCTTCcaaataaacattttaaaca
GTCTACGAGGACATGATTCTGCACCAAAATATTTACTCCTAGCAAAAATT
ACAGATCTAATACACCCATCAACCCTTAATGAGGTGGTCGGTTTTTAAGG
GGTTGTGTAACGGTTTTACAAGGAAGTGACGTTGAATTTCTTTATCTGTA
AGAATGTCAATGCACAGACTTCAGGATTTTTGACGTCATCACTTCTTCCT
AGTTAACTCGAACCCAGCCTCCTTACActttaaaagttgattttaGTATA
GGGATCATATCTTCTTTTTAATCTAGGGGCGAAAGATTTTCGCGTTCCGT
CCAGGAATGTGGGAGCCAAGTGAACGAACCTTGCTGGACAATCTGCGTGC
CAATTTGATTGCCATTGAGATGCTgcttgaagaagaagaaacgcAAATTT
GTGGAATCGTCATTATTGGCGATTTCCGGGGGTTTGGGTTCAAACAAGCG
AAAGCAATGTCGCCGTCCATCTTCCGTAGTTATGCTAACGTTTTGTTGAA
CTGTTTCCCCGTTCGAATCAAAGGGATTCACGTCATCGAGCAACCAAGGA
TTTTTACCATTGTTTTTGCTATTGTTTCACAATTCATGAAAGAGAAGTTG
CGGAAACGTGTTTATTTACATGGTTCGAACATTGTTGGAATGCATCAACA
TATTGCAAAGTCTATTTTACCGAACGATTTTGGAGGTGATAATTCACCGA
CTGATGTTCAAGAATGGttaaggtttgttttgaatggTGAAGAAGAGTAC
CAACACCTCTGGATGTAAATGTCtctgtgtgtattttacagaatggTTTT
GTAATTCAccgaacattttgaaattttaccgaACAGGCCCCTAAAAGTGA
AAGGTGATTGAAAGTTAATACACATTTGTGGATATTTCACCGAATGGTTT
GTAATTTGCAGAACGGTTTCGAATTATATGAAAGGAGGCTTCAAAAGGTT
GTAGGGGATTGATTTTCAATGTTTGTATATTTGTGGTGATTTCGAAATTT
TATACAGTTagccctctctaattcgattttcaagggaccaACAGCATTAT
TCGAAATAGAGAAAAATCTGAAttataaagtctgtctcaatataatctgc
agcggagacaaaaaaggctttaacttttgatagaattcgaattagatagc
ggttttgtgcttgttgaaaagattagCAGGAGTGGAATATCgtcataaag
aaaaaaaaagatcgggaaatgaagattgaaatgaagaagaagaaaatcaa
cttcttcaataattggGCTGTAATTATCATTTCCACACGAGGAATTCTTT
GTTCTTAGAACATCATTAGTGTGAAATATATTCCATCGAAAGATATAGTC
cactgattgacttcaaaaaccataaaaaggagccttttttaagtcaacca
gggcaaagttttaagctgtattATTTAACTGAATGAAtaatgtttgaatt
ttttttcgcgtttATGACGTTCTAATATTAAAGAATTTCTGATACAAAAA
TAATaagatcatagcattattctaagaagttgattttcttcttcttcatt
ttttcattttcgtttttccaTTCTTTAAATTGATTtcctttttgataata
ttccactccaaattatctttttaacgagcacaaaaccgctatcaaattct
atcaaaagttgcagcttttttttgtctccgctgcaaattatattgagaca
gacttgaGGGAGTAATTTAAGGACacgtttttttttgactgtaccaaaat
gccgattttcaaccaacccggttcaaatcggcactaacagagacagctga
accctttcttatcgttattcaaaaataaaaaaatagattaGTAGCTCTGT
CCGATACTTTTTGTCCGATCTTAATAGCTTTTATGGAACTTAAGATATTG
TTTGTTGAAtccggagtatttcaggatgaaaaaaatcatagtctATTTCG
GATTTATAAAGTCGGCTCTATATTTTGCCTTTGTCGTGTCCAATTTATAT
ACGAAACTTATATCAGGGTGTAGCTAAA Coding sequence (CDS) from alignment at sc0000101:497851..501778+ >TCONS_00009997 ID=TCONS_00009997|Name=TCONS_00009997|organism=Clytia hemisphaerica|type=CDS|length=2601bp|location=Sequence derived from alignment at sc0000101:497851..501778+ (Clytia hemisphaerica)
CGagatattcttcttttttttgagagaacaaaaaaatacaaaaacgcAAT
GAGTCTGTCGCAACTGTCACCAGAACTGGTGGAAAAAGCAAAAGTGGAAT
TAAATGAGGACCCAGATACTCGaatgaacttcatccaagaattgcgtgaa
aaatcaaaaacaagacAAGATTTACGAATCGAGCAAGCTGATAAAGATTT
AATCAAATTCTTACGCGCGCGGAAGTTTGATTTAGACCGCGCGTTCGATC
TGATGGTGACGTACTATGAATCGAAACGAGATATGAGTGACTTGTTCACC
AACTACAGTCCTTCAGGGGAGATCAAAGCATTCGAAAGTGGTTTCAGTAT
CGGCTTCAAAGACAGAGATCAAGAGGGGCGAAAGATTTTCGCGTTCCGTC
CAGGAATGTGGGAGCCAAGTGAACGAACCTTGCTGGACAATCTGCGTGCC
AATTTGATTGCCATTGAGATGCTgcttgaagaagaagaaacgcAAATTTG
TGGAATCGTCATTATTGGCGATTTCCGGGGGTTTGGGTTCAAACAAGCGA
AAGCAATGTCGCCGTCCATCTTCCGTAGTTATGCTAACGTTTTGTTGAAC
TGTTTCCCCGTTCGAATCAAAGGGATTCACGTCATCGAGCAACCAAGGAT
TTTTACCATTGTTTTTGCTATTGTTTCACAATTCATGAAAGAGAAGTTGC
GGAAACGTGTTTATTTACATGGTTCGAACATTGTTGGAATGCATCAACAT
ATTGCAAAGTCTATTTTACCGAACGATTTTGGAGGTGATAATTCACCGAC
TGATGTTCAAGAATGGttaaggtttgttttgaatggTGAAGAAGAGTACC
AACACCTCTGGATGTAACGagatattcttcttttttttgagagaacaaaa
aaatacaaaaacgcAATGAGTCTGTCGCAACTGTCACCAGAACTGGTGGA
AAAAGCAAAAGTGGAATTAAATGAGGACCCAGATACTCGaatgaacttca
tccaagaattgcgtgaaaaatcaaaaacaagacAAGATTTACGAATCGAG
CAAGCTGATAAAGATTTAATCAAATTCTTACGCGCGCGGAAGTTTGATTT
AGACCGCGCGTTCGATCTGATGGTGACGTACTATGAATCGAAACGAGATA
TGAGTGACTTGTTCACCAACTACAGTCCTTCAGGGGAGATCAAAGCATTC
GAAAGTGGTTTCAGTATCGGCTTCAAAGACAGAGATCAAGAGGGGCGAAA
GATTTTCGCGTTCCGTCCAGGAATGTGGGAGCCAAGTGAACGAACCTTGC
TGGACAATCTGCGTGCCAATTTGATTGCCATTGAGATGCTgcttgaagaa
gaagaaacgcAAATTTGTGGAATCGTCATTATTGGCGATTTCCGGGGGTT
TGGGTTCAAACAAGCGAAAGCAATGTCGCCGTCCATCTTCCGTAGTTATG
CTAACGTTTTGTTGAACTGTTTCCCCGTTCGAATCAAAGGGATTCACGTC
ATCGAGCAACCAAGGATTTTTACCATTGTTTTTGCTATTGTTTCACAATT
CATGAAAGAGAAGTTGCGGAAACGTGTTTATTTACATGGTTCGAACATTG
TTGGAATGCATCAACATATTGCAAAGTCTATTTTACCGAACGATTTTGGA
GGTGATAATTCACCGACTGATGTTCAAGAATGGttaaggtttgttttgaa
tggTGAAGAAGAGTACCAACACCTCTGGATGTAACGagatattcttcttt
tttttgagagaacaaaaaaatacaaaaacgcAATGAGTCTGTCGCAACTG
TCACCAGAACTGGTGGAAAAAGCAAAAGTGGAATTAAATGAGGACCCAGA
TACTCGaatgaacttcatccaagaattgcgtgaaaaatcaaaaacaagac
AAGATTTACGAATCGAGCAAGCTGATAAAGATTTAATCAAATTCTTACGC
GCGCGGAAGTTTGATTTAGACCGCGCGTTCGATCTGATGGTGACGTACTA
TGAATCGAAACGAGATATGAGTGACTTGTTCACCAACTACAGTCCTTCAG
GGGAGATCAAAGCATTCGAAAGTGGTTTCAGTATCGGCTTCAAAGACAGA
GATCAAGAGGGGCGAAAGATTTTCGCGTTCCGTCCAGGAATGTGGGAGCC
AAGTGAACGAACCTTGCTGGACAATCTGCGTGCCAATTTGATTGCCATTG
AGATGCTgcttgaagaagaagaaacgcAAATTTGTGGAATCGTCATTATT
GGCGATTTCCGGGGGTTTGGGTTCAAACAAGCGAAAGCAATGTCGCCGTC
CATCTTCCGTAGTTATGCTAACGTTTTGTTGAACTGTTTCCCCGTTCGAA
TCAAAGGGATTCACGTCATCGAGCAACCAAGGATTTTTACCATTGTTTTT
GCTATTGTTTCACAATTCATGAAAGAGAAGTTGCGGAAACGTGTTTATTT
ACATGGTTCGAACATTGTTGGAATGCATCAACATATTGCAAAGTCTATTT
TACCGAACGATTTTGGAGGTGATAATTCACCGACTGATGTTCAAGAATGG
ttaaggtttgttttgaatggTGAAGAAGAGTACCAACACCTCTGGATGTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009997-exon-sc0000101-1491911889:497851..498046 | TCONS_00009997-exon-sc0000101-1491911889:497851..498046 | Clytia hemisphaerica | exon |
| TCONS_00009997-exon-sc0000101-1510915933:497851..498046 | TCONS_00009997-exon-sc0000101-1510915933:497851..498046 | Clytia hemisphaerica | exon |
| TCONS_00009997-exon-sc0000101-1575043694:497851..498046 | TCONS_00009997-exon-sc0000101-1575043694:497851..498046 | Clytia hemisphaerica | exon |
| TCONS_00009997-exon-sc0000101-1491911889:499046..499225 | TCONS_00009997-exon-sc0000101-1491911889:499046..499225 | Clytia hemisphaerica | exon |
| TCONS_00009997-exon-sc0000101-1510915933:499046..499225 | TCONS_00009997-exon-sc0000101-1510915933:499046..499225 | Clytia hemisphaerica | exon |
| TCONS_00009997-exon-sc0000101-1575043694:499046..499225 | TCONS_00009997-exon-sc0000101-1575043694:499046..499225 | Clytia hemisphaerica | exon |
| TCONS_00009997-exon-sc0000101-1491911889:500027..501778 | TCONS_00009997-exon-sc0000101-1491911889:500027..501778 | Clytia hemisphaerica | exon |
| TCONS_00009997-exon-sc0000101-1510915933:500027..501778 | TCONS_00009997-exon-sc0000101-1510915933:500027..501778 | Clytia hemisphaerica | exon |
| TCONS_00009997-exon-sc0000101-1575043694:500027..501778 | TCONS_00009997-exon-sc0000101-1575043694:500027..501778 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000101 | supercontig | sc0000101:497851..501778 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005215 | transporter activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006810 | transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006810 |
transport |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0005215 |
transporter activity |
Blast
BLAST of TCONS_00009997 vs. Swiss-Prot (Human)
Match: CLVS2 (Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 5.010e-55 Identity = 107/262 (40.84%), Postives = 158/262 (60.31%), Query Frame = 2
Query: 65 LSPELVEKAKVELNEDPDTRMNFIQELREKSKTRQDLRIEQADKDLI-KFLRARKFDLDRAFDLMVTYYESKRDMSDLFTNYSPS--GEIKAFESGFSIGFKDRDQEGRKIFAFRPGMWEPSERTLLDNLRANLIAIXXXXXXXXTQICGIVIIGDFRGFGFKQAKAMSPSIFRSYANVLLNCFPVRIKGIHVIEQPRIFTIVFAIVSQFMKEKLRKRVYLHGSNIVGMHQHIAKSILPNDFGGDNSPTDVQEWLRFVLNGE 841
LSPE +EKA++ELNE+PDT IQE+R+ TR D+ + D I +FLRARKF AF L+ Y+E ++ D+F ++ + G +A + GF G + D GRKI W+ S TL+D LRA L+++E ++E+ E Q+ G V+I D+ F FKQA ++PS+ R L + FP R GIH + QP ++ ++ F+KEK RKR++LHG+N+ +HQ I ILP++FGG P D+ W R +L+ E
Sbjct: 8 LSPETLEKARLELNENPDTLHQDIQEVRDMVITRPDIGFLRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEILPSEFGGMLPPYDMGTWARTLLDHE 269
The following BLAST results are available for this feature:
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