|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009995 ID=TCONS_00009995|Name=TCONS_00009995|organism=Clytia hemisphaerica|type=transcript|length=988bp
AAAAGACGATAAAAATATGCTACCATTATGGAATTCAGATATGTATACTT
TTGGTGCCATGACAATgacgaatctgattggttattGGTTGATCAACAAA
GCAATGAAAAGAGCTCGAATATGGAGATATGTTGTTGATGGTGAGGTTTT
GACTAATCGAGATCAATGGATGGTGTGTAATATCATTTGCTCGCTTATCC
ATTCAATTGTGTCTGCAGTTTGGACGACCACTTGGTTATTTCATGTACGA
CACATACGATATCCTATTGAATGACGGTTTCCGACAAAAGCCAGTGCTGA
TTCATCATGTTTTAATCTTGCATGCATTTCCATTtgctttgatgacgtca
tcgtacCATGGTTTTGCATTGTCAGCTCTTTTGATGGAATACAGTTCAAT
TTTCCTTCACTTGCGACGTCTTATGAAATACGCTAACAAAAAACCGACTA
TTTTCGGATTGCCGAGAATTTTCGTTGAAATGTTCGTGAAAGTCTTTCTC
GTTTTAACAATGCTCGTATTCCGACATTTGCTATCGTTGTTTTTAATACG
TCATATGTGGCAAAATCGCAACACCATTACTGGGATACCATTTTGGATTG
GCATTACGTCATCAGTTGTTTTTATCCCAGTGAATATCGGATTATCTTAT
CGGGTTTATAAAACCAAAGACTTAGAGAAAGGAAGACGTCGCACCATTGT
TTCACCTTAGTTATACGGCACAGATATAGATTTTTTTTACTGGATTGTCC
CGTGTTGAAAAATGCTGAGTCAGCAGAAAAAACtagattaaaatattttt
ttagcgaTGAAAGATTTTTCAGAGAAAAGTACAAGCAAATTTCTTGGAAA
TACAAGcatttgataacttttgactgcTGTTTGCTTCAAGGATGGCGGAA
CCTGGGTATTTTAATGATGACCTTGATGAAGTACTGATAAGTTTCATTCC
TGATGAACTAGTCAAGTCAATAAAGAATGGCACTGATC Run BLAST on NCBI transcript from alignment at sc0000101:474679..478785+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009995 ID=TCONS_00009995|Name=TCONS_00009995|organism=Clytia hemisphaerica|type=transcript|length=4107bp|location=Sequence derived from alignment at sc0000101:474679..478785+ (Clytia hemisphaerica)
AAAAGACGATAAAAATATGCTACCATTATGGAATTCAGATATGTATACTT
TTGGTGCCATGACAATgacgaatctgattggttattGGTTGATCAACAAA
GCAATGAAAAGAGCTCGAATATGGAGATATGTTGTTGATGGTGAGGTTTT
GACTAATCGAGATCAATGGATGGTGTGTAATATCATTTGCTCGCTTATCC
ATTCAATTGTGTCTGCAGTTTGGACGACCACTTGGTGagctatttttttt
cttctaaaaattCCTGATGTGTTAAGAATATTTCCTTCAGGTCAAAACTT
TTAGGATGCCATTGAAATTGCTAGTAAAATGCTAATAACAttgttaaaag
ttcttccgtcttaGACGGTTTCCGTCACAGCGTCGATTATATAATTGAAT
AGACGTTCTCAAGTCTATAAAGAGccttttccgtctcaaaattcgGCACA
ATTCACCAAAATCTCAAGACTACGTGCTAATTTGATGTGTAAAATTCATT
TTCAGACGAAAgaccttgctttgaccactgtttAAATTGCTAGAATAAAT
GCTAATAAGGATTATTAAAGTATCCCGACGATTTAACTACCATTATGACC
GAAATACAAAAGTACTTCTATCCCCCAAATCGTGAAGTTTCTTGTAgaat
agactggagtcgttcataatgcgtgtaatacagtagtataggcgttctAT
GATAATACGAATATTGTTATATGTGATTCAGCTTGTATAAATATTTCATT
AACAATAGCAAACCAATATAAATATGCAACTTTTGGCTTGCTCataggtt
tctagacgactaaaatttgttccctctTTTACtctttgctttatttctac
cgggtgtcccagaaaaaagttctgctctttgaagtgaattttctcgagtt
ttatgaatttttaaaagatcaatccttttgcattggaaagaggaaagata
aacttcaattttgagggtcatttatcaaatttggtcaactagatcaaaaa
ttatgctgaaatgaataaaattttcacattttggaaaggctcaaaaacgt
tgaaaatcgacctatcaaattttataacctaattattacttttttgcagg
aataaaaagtttaaagtggacatgaaaacaaaaaatgcttgaaataaTTC
TCTAAAGGactaaaaaatttcatttgagtcatttcaaattattttctatg
GAATTCAGCTTCAAGTTTTGGCTTAAGGACCCCTAAAGTCAAAAGTAGGG
CTGATTTTATCAGTGTAGCTATTGAAGTCANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTCACTTAAAATCTTACTtcgtttttcataaaa
agataCTTCCATTAGGTTTTTATTGCTTCAACAATGAAAATCATGATCCA
TGCAATTATGCTTCTATAAGAATTTGATAGGTCgcttttcaacgtttttg
agcaattacaaacaaaagaattttttattcattttggcTTAATTTTTGAT
CCAGTTGACTAAATttgacaaatgacccctcaaaatttaattttatcctt
cctctttccatagtataagaaagccgcggctggaatatgtaccgcattgt
cttttcagttaattgctgttccatctctgtctccgagctttataagaaca
tcaagattgtTAGTTTATTATTGGtggatagtttttgaaatttttctctt
attttccttcacaagaagattttttgtttctagatatctttgaatctgta
cccaatgaAACACTTTAACTGATtgtggacatattttagggggattttgt
ggaaacgatagtttttcgccaaaattaaaattataagaactatatttaag
ataacaactttcctgtcagtttgaatgataaattttgaaggtgctggctt
gaaattttcacagaattatcTTAATGTACTATCTCATTGATTTCTAGAAA
ggtttcactgaaatattgtgaaggcatttcgaggcaccttattaattttt
gagttctttcagcctagccatttgtgcttgtttaaatttcttattgttaa
tctttcctgcacaatgatattataatgcaagtgtattatcaagggcatat
cattgatgtctaaaacgcactgcgaagtaagtattaacgacaaactaata
aagtttaccattaaagatgctacactacttatttcttgatcaacaaatag
tcatcaaatacgacagagatagaacagtagaaattcagatgttatcattc
cagccgcggctttcttatactatgctctttccaatgcaaaaggattgatt
gtttagaaattcataaaactggagaaaattcacttcaaagagcggaactt
ttttctgggacacccggtactATGTTTGAATTAGTCGTCAAGTTTCTTCT
TGTAGAGAAAAGATTTAACCATGATTTAACTCttatacagacattctcag
caATTTGatttgtgtgttttttattcagttttttagcTACTCCATCGTTG
GTTGAAGATTTGATTAACAAGACATCGTGGTGGAGTTCTGCTCTTATTGC
AGCTTCAGGAGGTCTGTAGTGTGTATCACTATTGACACTCTAATTCGACC
TTCTTCTATTTGATACACTCCAttgttcgatgaaatttaagtccccgtca
acaagaaaaattcataaacgacgctctactatcgatacgctcccttattc
gatgaaaatccaattctccttggaaatcgaattagaaagcgtcCCATTCT
TCATGGTGATAAAATGTAGCTGTTGTTTTGTAAGCCAAGGGTTTGAACTT
TAGTTCTAGTAAAGGACTTTAGGACTAGTCACTTGGTTTGCGAAAGCTGT
GGAACATTTTTCGTATTGGCTTTGCAgcaattaatttttcgaatttttgt
gtGTCACACTTTGTTTGCAgcgaaaagaaaagaagaaagcaAGAGTCTTG
AGAATCCTAGAGAATCTGGGAATCTTAAACATACTTATTCCCATTTCTCA
TAGGTTATTTCATGTACGACACATACGATATCCTATTGAATGACGGTTTC
CGACAAAAGCCAGTGCTGATTCATCATGTTTTAGTGAGTTGTTCTACCTT
CCCGAAACGCTCTCTTTTTCAGCGAATTTGTGGTGTTTTGACCAGAGAGT
GTTAGATTTGccgagaaatttttttgaaaatgttcgtCAAGATCAAGGAA
ACTTCCTTTGTCCTTGAAAATTGTTATTCTATTAAACTTTCTCTGATTTt
ctattgatttttgaaaatttctcttttatttAGATCTTGCATGCATTTCC
ATTtgctttgatgacgtcatcgtacCATGGTTTTGCATTGTCAGCTCTTT
TGATGGAATACAGTTCAATTTTCCTTCACTTGCGACGTCTTATGAAATAC
GCTAACAAAAAACCGACTATTTTCGGATTGCCGAGAATTTTCGTTGAAAT
GTTCGTGAAAGTCTTTCTCGTTTTAACAATGCTCGTATTCCGACATTTGC
TATCGTTGTTTTTAATACGTCATATGTGGCAAAATCGCAACACCATTACT
GGGATACCATTTTGGATTGGCATTACGTCATCAGTTGTTTTTATCCCAGT
GAATATCGGATTATCTTATCGGGTTTATAAAACCAAAGACTTAGAGAAAG
GAAGACGTCGCACCATTGTTTCACCTTAGTTATACGGCACAGATATAGAT
TTTTTTTACTGGATTGTCCCGTGTTGAAAAATGCTGAGTCAGCAGAAAAA
ACtagattaaaatatttttttagcgaTGAAAGATTTTTCAGAGAAAAGTA
CAAGCAAATTTCTTGGAAATACAAGcatttgataacttttgactgcTGTT
TGCTTCAAGGATGGCGGAACCTGGGTATTTTAATGATGACCTTGATGAAG
TACTGATAAGTTTCATTCCTGATGAACTAGTCAAGTCAATAAAGAATGGC
ACTGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009995-exon-sc0000101-1491911889:474679..474912 | TCONS_00009995-exon-sc0000101-1491911889:474679..474912 | Clytia hemisphaerica | exon |
| TCONS_00009995-exon-sc0000101-1510915933:474679..474912 | TCONS_00009995-exon-sc0000101-1510915933:474679..474912 | Clytia hemisphaerica | exon |
| TCONS_00009995-exon-sc0000101-1575043694:474679..474912 | TCONS_00009995-exon-sc0000101-1575043694:474679..474912 | Clytia hemisphaerica | exon |
| TCONS_00009995-exon-sc0000101-1491911889:477832..477911 | TCONS_00009995-exon-sc0000101-1491911889:477832..477911 | Clytia hemisphaerica | exon |
| TCONS_00009995-exon-sc0000101-1510915933:477832..477911 | TCONS_00009995-exon-sc0000101-1510915933:477832..477911 | Clytia hemisphaerica | exon |
| TCONS_00009995-exon-sc0000101-1575043694:477832..477911 | TCONS_00009995-exon-sc0000101-1575043694:477832..477911 | Clytia hemisphaerica | exon |
| TCONS_00009995-exon-sc0000101-1491911889:478112..478785 | TCONS_00009995-exon-sc0000101-1491911889:478112..478785 | Clytia hemisphaerica | exon |
| TCONS_00009995-exon-sc0000101-1510915933:478112..478785 | TCONS_00009995-exon-sc0000101-1510915933:478112..478785 | Clytia hemisphaerica | exon |
| TCONS_00009995-exon-sc0000101-1575043694:478112..478785 | TCONS_00009995-exon-sc0000101-1575043694:478112..478785 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000101 | supercontig | sc0000101:474679..478785 + |
Blast
The following BLAST results are available for this feature:
|
