TCONS_00009991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009991
Unique NameTCONS_00009991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009991 ID=TCONS_00009991|Name=TCONS_00009991|organism=Clytia hemisphaerica|type=transcript|length=3812bp
CGGCTTCTCCCGCGTCATCAACAGCTAGTTCCAACCCTCCTTCACCTGGT
TCAAAAGACAGTCTTTCACAACTCTCCGCCCTCATACGGAAAGGTGAAAA
GAAGGGACTCTTCACTGAAAACATGCCAACATATATCAAACGGAACGTGA
ACGAAGCGAACAAAGAGTTCATGTGTAATTGTGATATTTACAATAAGGAA
TATTTCCTCTTCATCAGAGAACTGTGCAACGTCAACACCGTATGTAGAAA
TAATCTTTAAATAGTGTCGATTTTTATATAGATAGCCCAGTGGTCTAGCC
TAGGACTTTTGGGCAGTCTTTCGTGTTTTCGCGGGGTCCACAACCAGctg
gctcggctatctatgaacagaacagaacattggaaggagtaAGGATTCGA
ACTGGGAACCCCTGGTTTTTCCTTTCTAAGAAAGGACAGGAAAGGAACCA
AAAAAGTCGTTTTGTGacgaatgaatattttttaacgATAATTTTTTCCA
CTGACAAACTACTTCTACCGATGGAGTATGGAGCTCTTTTTTTGTTGCAT
TTACTCACAAGTTCCTTTGCACGCGTagcctttaaaaaaaatattcttgg
cTTAGCGAGAATTATATCGACCTTCTCTTTTTAAATAGAAACCAAGCATT
GTCCGAAAGATTCTCAGCGAAGAAAATTCGGACGAAATTAACGAAGACAA
GGCCATTATCTCCTTAATACAATTATCTACACAGTATCTGATCAACACTT
ACTTCAAGACTGCGAAATCCTTTAGGACTGATTTGGAGCAATGGAAAGTA
ACGCTGGAGAATTTATTCAATTCCAATTTGGTGACTAACAAATGGTTTTG
TGATTTCTTCGGACAACCTCAACAACGACCCTACCTTGTTATGTATTTAT
TGGAGTGTCCAGAAGCGGATACACGTCAATTGTTTTCCACATGGCTCATT
CAGGCTTGTCGTAACATCCTCAACCAGTTGAACAAGGTGACGGATGAGAT
CGATGCCTTGATAAGTCAACTTTTAACTTTGTTGGACAGCGAGGCAGGAC
ATCACATCAAACAAAGCTCTCAATATTTCTCCTTCTTTCATCGATACTCT
CTTCTGtcattcgAAGCTTTGTCTCACTTGTTGGATATCGGTGCATTCCG
CaaattccaaaactttttgCTTGGATCTCGGTCACTAACTAATCCTGAGA
AATTGATTCGCAGATGGACTTCAGCGCAAACGCTAGAGCTTCTTTCGCTT
CATCAAGTCATGTCCACAATCGTCATCAACGTGGAAAACGAATCTCTACA
TACAGTCTCCACAGACATCGAATGCCCTCCACCACGCAAGATGGTACAAT
ATCCCAATCGATTGAAGATCAACAAAGACTTATGTGAACTTTTCTACGGG
ATCGATTCTGACCGTTACTTGCATGAGCTTCTGTTTGCAACAATAGAAAT
CCCACACGCCAATGAAtgtgtttatgacgtcatcatgtATGGATGCTGGT
GCAATCTGGCTTTCTCGCTGACCTTCTTCCAGCAGATACAGatGTTTCTA
GCCAAAGCCCAAGTCAGTGACTTCGTCAATCTGTTCCCACTTCTCAAAGG
AGTTTTGTGTTTGGACGACCCTCACCAAACAAAGCGAATCGAATGTTGCG
TTGGTGGTTCAACAGAGGATGATATTGAAGGCCTCTTTAATTTGATACAT
AACTCTCGCAACGAGAATGGACGTCGCTCGTACGAATGCGTCAAGTTCTT
GACCAGTACAGCAAAACAAATTCCCAAATTCCGCGAATACATCAGCCATG
AGGCTCAATACAAAGATAAACTTGATGGCGCCGTCAAGTGGTTAGAGAAA
AAGTTGAGTGAAGGTTCGTTCTGGCAATCAAACAAAACAAGTTCCACCAC
TCCCTCCTTTCGAAGGACCACAAGCGAACAGAACACACTGCACGAAGCCA
CCAAACTTTTGGATGAAATGGAATCTCTTGATGCTTCCAATACCGCTATT
GTTGAAATTACGTGATCTGAAATACTTAAATATCATTGGTCCTAAATCAC
GTAATTTCGGAATCCTCCAACCTCATTGGACGATATCCGATTCCCTAATC
ACACGATCGAAGATCCTCCAGTCCAGTGAATGATCCTGAAATCCTTGATA
ACGTGACCTTGGAATCCTTGAATCTCATTGGCTGACTTTGCAATATTCAA
CCACGTTCTCAGAATCTATTGGACGGTGGTATCTAAATCCTGACAGACGA
TTGGTTAGTGTAAACAATGTAAACTCAAGTAATGAAGGTGCCATGAGTTG
TTAAAAATCTTAGTGCATCAGTCTTTTAAAAAGGCTACTGTACTGCAGCT
GCAATATGTTTGTAACCAGACGGTGtaaatcgaacgaatcgaacgccgaa
tcaattgaacgcaattgaacgcaatcgaataattgcaattcgattgtcga
acgcaatcgaatcgcaatcgaatattNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNaatcgaatcgcaatcgaatattacccaggatttgctgttcgattg
cttcgattacgttcgattgtattcgattacgttcgattgtattcgattac
gttcgatttaCGTTCGGTACTTAAGCACTCGGCTGCCCGCTAAAAAGCCC
Taacggagtgatccaatttaatttaatcaaactcatcaaacataatccta
atcgaacgaaatcaaaGATTATTCTTCGAATGCAAATGACAATCGAACAT
AGTTCAACTATCCAttgaaccaatctaaccttactcaaaccaatcgaaca
caatcgaatattacccaggaatcggccgttcgattgagattcgattacgt
tcgacaatcgaatcgcaatcgaatattacccaggaatcggccgttcgatt
gagattcgattacgttcgacaatcgaatcgcaattattcgatcgcgttcg
attgcgatttttgttcgaagttgttcgattgacaccgtctggttgtAACA
ATGATATAAGTTAGTATCAACAATCGCAGGCGACCGATAGATGATTGATA
ATTCAGGGAAAAGCTCTGACTGCGATACAATATGAAAGATAAGCAAACTG
TAAATAAACTTCAATCTAAAATGTAATATTTACTCCCAATCAATTCAGAC
TTTTCAACGTTTCAAAGACtttcatcaaatttaaaattttcaagttaggT
TTTGGAtagattttttcaattcataatTTTTGTACAATATATCCTTTCGA
TTTCTCTTTCTTTGAGAACTTTTTttagtttacattttatttttttcaat
ttagctTCCAAATTCTTTTCCACTTAAGATTATCCTTTCAACATGCCATC
TTATAATGTTCTGTCGCGAAAACTCAAGAAATCGATTTCATAGGGTAGTG
AGGtccatgaaagattttttttcgccattttaaaaagttttcattggata
aaaatatgtaaatgtGTAAATCTGTGTGTGTAAATCTTACGAAAAACATC
ATGTGAAATAGTACCAAAGATgtttttcgaattagagaaaaatccGGATT
ACTCAGAGTATTTTATACGGGTTTCCAGCTGAGACAAtcgatttagttcg
aattagagagggttGACTGTATCTCAAACCTTTAGAGGTTGGAATTTGTC
TCTTATCTATCTTAGTATTATTTCGACTTTTTATACATTAATATTTATAT
ACCAGTTCTTACACCCTTTTAATAGATCATAGAATAAATGTATCTAATGC
AATAGATTTCCT
Run BLAST on NCBI

transcript from alignment at sc0000101:432212..445885+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009991 ID=TCONS_00009991|Name=TCONS_00009991|organism=Clytia hemisphaerica|type=transcript|length=13674bp|location=Sequence derived from alignment at sc0000101:432212..445885+ (Clytia hemisphaerica)
CGGCTTCTCCCGCGTCATCAACAGCTAGTTCCAACCCTCCTTCACCTGGT
TCAAAAGACAGTCTTTCACAACTCTCCGCCCTCATACGGAAAGGTGAAAA
GAAGGGACTCTTCACTGAAAACATGCCAACATATATCAAACGGAACGTAA
GTGCAGTTTCTCTTTTTGGtgggtttttcattttttcatcagGTCAGCTT
TCAAGATTAACTATATTAATTATAATAATTATTTGTAAGTCGTTGATTCA
CCGAAGTGAAAATATGCCTATGTAGATAAAAAACATATCAAACGAAACGT
TTCCTCACTGCAGTTTCCAAgatttaccaactgacggtatatgaggcgaa
aaaattggcttttagaatcgcacccttacagtgcagaaaaaaatcggtga
aattcatacccttacagtgcattttttcaaaatttacactcttttagatt
tgctgaaatttccacccatacagtgcagttatcaaaagtccacccttaca
gtgcatttctgctatTTTGAAAAGCATACCTTTGACCGCCGCACATGCCC
GTCGGTCAATCTGCCTGACTGCCCCCTCCCCTCCCTCCTGGGTACAGTAT
ATAATAAAGAGGCTTTTACGTCTTAAAATTCTACATTCTGCAGCCTCCAA
GATTAACCATAGTTTGGGTTAACCCATTCCTACTACTTCGATAAAACTTC
ACTGTTAAAAGTTCTTTTGTCTTCGATGGGTTTCCGCCTCAGTGAAGTAT
ATGAAGAGGCTTTTCCTTCttaaaattctgcataattcaccaaagTGGGA
ACATGCCTACGTATGTCAAACGACGTGTAATTACAGTTTATAACTGGAAC
AACGTTtatcagtgccgtagcaactggtgGGTAAAgtggggctatgcccc
cccccccaataattttttcaaaaatgctaagtttttttttttaatttgtc
ataattatCTTTTATGTGTATGTTTTGAGTGTGTTTTTAAGCAATctcga
gctcaaattttcaaaaccccccccccccgggccaaaccatggttggccct
cgcggtgtcactaaacttcagccccccccccccaatatgggGGACCTTAA
GCATCTAGAACGGCAACTTTGAAAGAGTACGGCAGGATTGAACAATAAGA
AAATCCTTTTAGATTGATATCTGGATCGCACCtagattcttttcttttca
tatcaattttctcATGAGAAAAGTTAATTTTAATAGGATAATTAATGGAC
GTTTTCAAATCTCAAGACAACTTGAAATTTCTGTTTTGACGTCGTCTTCG
GGATCGGAAGAGTAAAGTAGTTTTAAATGATATGAATCCCTCGAGAATTA
TAACGTTATATTTTACAAAGACTTTCCtgcatttgaaatttttccatgTG
TATTAAATCTAGATAAAATCGCATAAAAATTGCCATTTGCTTTTAAGATT
TACTTCACGTCCTCATTCAAGTCGCCGTCCTAGATGCTTAAGGTCgctat
gaaaatgcttcctacggcactggttTATAAATAGACGTTTCCGAAACTTG
AAAAGTTTCTACAGCACAAACGGTTATTGTTCCCCTCTTTGGTCTAGTTA
TAGAGACCTGACTACCATAACATCAAAACAGTGTTAGCCGGGATAAGCTC
TAAGAATTGCCAGATCTAGATGAAGTTTTACGCATATTTCCACGTGTATT
TCTCTGTTTTTTTATATTGTGTATGTTTTTTCGTCAGAGTATTAGCTCTC
ATAATTAACCACAGTTTAGGTTCATTTAAGGGTCACATACttgtttatta
aataatttccTTTCTTTTAAGTTTTGTACAGGTCGAAAAGATTAACCAGT
TTAGGCTCATTCTTAAGGGTCCAAAACTAAGAATAGAAGAATGAAATAAT
TTCCTTTCTTTTAAGTTTTGTACAGGTCGAAAAGATTAACCAGTTTAGGC
TCATTCTTAAGGGTCCAAAACTAAGAATAGAAGAATGAAATAATTTCCCT
TCTTTCATATTTTGTACAGGTCGAAAAGATTAACCAGTTTAGGCTCATTC
TTAAGGGTCCAAAACTAAGAATAGAAGAATGAAATAATTTCCTTTCTTTT
AAGTTTTGTACAGGTCGAAAAGATTAACCAGTTTAGGCTCATTCTTAAGG
GTCCAAAACTAAGaatagaaaaatgaaataatttccCTTCTTTCATATTT
TGTACAGGTCGAAAATATTAACCATAATacaacaatagcgttcagtttga
ggtcgttgttgttattttctgcccgcgtagtttgattattcgcccgatgg
tgtcatttgggcccaacgcgaagcggagggcgcaaatgacactagagggc
taatattcaaactgcaagggcagaattaatgacaacaacgaacgaaaact
taacgctattactattattattcatatcggacattcaaacaacatttttt
tctagcgtcaaccaagtcttttcgcttcaatgcaatctcttcaacaaatt
tttagcaccttgcgagcgggccgcaaatgaccaaaaagtgtttttttctg
acgttattTTAGTCacttcgcttcaatgcaacgacttcaatccaaTTCCA
AGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGgtaaatgatatttcagccctctgaagcctg
gcgctttagtttcctcagcgcgggtatgacaatttgagtcacaaaacctt
tcaataccgcccgcagATCGAACCTTTAAtagcttacttaatgaccgcta
tatggataataatttagctctaaaacttaaaaataatttccttGCTTACA
TGTTGTGTATTGGTTGAAACAGTCACAATTTAGCTCCATACTTATAATGA
ACTAATTTCCTTTCTTTCATGTTATGTGCAGGTGAACGAAGCGAACAAAG
AGTTCATGTGTAATTGTGATATTTACAATAAGGAATATTTCCTCTTCATC
AGAGAACTGTGCAACGTCAACACCGTATGTAGAAATAATCTTTAAATAGT
GTCGATTTTTATATAGATAGCCCAGTGGTCTAGCCTAGGACTTTTGGGCA
GTCTTTCGTGTTTTCGCGGGGTCCACAACCAGctggctcggctatctatg
aacagaacagaacattggaaggagtaAGGATTCGAACTGGGAACCCCTGG
TTTTTCCTTTCTAAGAAAGGACAGGAAAGGAACCAAAAAAGTCGTTTTGT
GacgaatgaatattttttaacgATAATTTTTTCCACTGACAAACTACTTC
TACCGATGGAGTATGGAGCTCTTTTTTTGTTGCATTTACTCACAAGTTCC
TTTGCACGCGTagcctttaaaaaaaatattcttggcTTAGCGAGAATTAT
ATCGACCTTCTCTTTTTAAATAGAAACCAAGCATTGTCCGAAAGATTCTC
AGCGAAGAAAATTCGGACGAAATTAACGAAGACAAGGCCATTATCTCCTT
AATACAATTATCTACACAGTATCTGATCAACACTTACTTCAAGACTGCGA
AATCCTTTAGGTATGCAGTTTTGATATTATTGTACAGGAGGTCGGGGTTA
TAATGACCTTCGTTCAACCGAATCCACCTTGCCATTGTGATGGGAAAAGG
GTAAACGAAATCTTTTGCTTTAACTGCTTTAACTGTCAGCAACCGACTCC
ACAATACGAATCTACCTATGGGGAAATTATTCTTGTTTTCAAGTAGTTCA
CGATGTATTGAGTCACTCGAGCAAAAGACTGTCTCGAAATGTGGTTGGCA
TGTAAAATTTAAGTTTAGTCTCTATAACTTGAACGAGGAATACAaattgt
tcgaattaaggaaatttcgagttttaacttgaaggaaaagaaaacttttt
cgagttaagaagacattcgagtCAAAGAAGTTCGAGTCAAACAGACTCTA
CTGTATACCTCTTCATTACTTCTTTTCAAGGACTGATTTGGAGCAATGGA
AAGTAACGCTGGAGAATTTATTCAATTCCAATTTGGTGACTAACAAATGG
TTTTGTGATTTCTTCGGACAACCTCAACAACGACCCTACCTTGTGTAAAT
ATCCTTTCTTTACAGAGAATTTTTTAGAGTCACCATTTCTTAACCGTTAG
TGACCTCTGGTATTTTAACGTATTAACCCTGCAGACTATTTCTGTTTGAA
CCTCCTGTTTGTAACACATGCAATAACATGCAAAATCATTACAAATTTTT
ATTGCCACCACCAGAAAAAATTTGGCGCTTAAAACGTCGTCACTTTCCTA
GAAATTTCGTTACTCGTCCCCAAGTTTTCCCCCTTTAATACCTAGTTTGG
TTATtcacgttttttatgagaacaaaccatataagaacataaagcttcgg
cGGCCacaatgttaagaacaagttagggACAGGAACCTGGTCTAAAAAGA
GCGTGACGTAACTTACCCCTTCCTCTAGAAGGGGCCTAGTGAGATACTTA
TTGGGAAATCTAGAAACCTAAATAGCAGATAATTGTAGTATCTTAtaaca
aataaaacaaaaatttcaccatctcccgtttcatatcagacacatatttc
atatcaggacagcttcttcctattgttatattatgctgatatatgcaaaa
aatgtttttcttttcctctttctgaccaatcttgctccacatccgtgtca
atccaatgaaaaagcttgtgaattaaaattgatgagtgagcaagcgatat
cactcttatttaaaaacaaaacctttaagttttgTTTTACTAGTAGTATC
tgatgttttctttatttttccagTATGTATTTATTGGAGTGTCCAGAAGC
GGATACACGTCAATTGTTTTCCACATGGCTCATTCAGGCTTGTCGTAACA
TCCTCAACCAGTTGAACAAGGTATGATATCGCAATGCTTTATGCAAATGC
TGGTTTGGGAGTAACATTTTATTATTGCTAGAATTTGTAAAAACACCCCG
CGCAAATTAACTCCCCATGGTTAAATGGGGTACTAGATTGAATCTGGcat
ctgaaattttttaaagcttctttttgctttggaaaGGTTGAAAGACTCGC
TTCTAATCTTCGTCTTAAAACTCGATGGCTATtattgcaaaatatttcaa
tattcgTGTTCTACCCAACGGTAGTTAGACGAGCTCTCGGGAAGGCTTTT
TTTGAGAGATATGGTATAGTTTATTTCTCGCTCGTCTAGACAGGGTTAAA
GTTCACTAAAAATTGTATGTTACAGTAAAAACTTCTGTCCAACGAAAATA
TAGattcttaataaataaatatagaTTCTTTTCTTCCATCACctataaat
ttataagaaactCTTCAAAAACGAACTTTCCCATTTTTAACGATTCCCTC
CAACAGCCAAAGTGTGAAAAAACCTTTACAATATCCTTCCTTCAGCAGCA
AGAAACTGTCAACTCCATATCTTCACTTCCAACTTTTGATTTCTTCATCT
TAGGTGACGGATGAGATCGATGCCTTGATAAGTCAACTTTTAACTTTGTT
GGACAGCGAGGCAGGACATCACATCAAACAAAGCTCTCAATATTTCTCCT
TCTTTCATCGATACTCTCTTCTGGTAAGTCATCTTTGTACACCATTGTGT
TGTTTTTAAGAGTTTGAGtggaaaaacattttaaaaacatttgaaagtaC
AGGCACCGGGTATTACGgcgggacgagatggagtttttacaagctcttat
ttgatttggttgctCGTTAACCAgttataaaacaattttgttactttttc
taaagaacgcgtcatttttattacttcaaatggccaattattaaaatatc
ttaaaaactccatctcatctgaataCTGCACGTTAGTCCATTTTTTCCAC
AGAGCCCTCGAATTACCCTTTTCCTCATTTGTcgtatcagatttaaaaag
cgTCCTTCGTACTTGAGTACAGAACAACTTAAAACGTTTTCAGCTTGTAC
TTCTCCTTACAAAAAACGTCGAAATACTGTTTCAAACAGATAGAAGATGA
AGAAAGTACTGTCGTAAACTTTTTATTCTGTATTAATAGGAGTACCTAAT
TTCACAGTGCCAGAGTACTACGGATTTTTCAAGTCAATACTTATGCATGC
ATGTGTGAAGTTCGTTTTAGGGCATTGCAGTCCTGTCAACTAcctttgcc
caaaatttttcaCGTCAATACAATACTTCAATctttttcgtttcagtcat
tcgAAGCTTTGTCTCACTTGTTGGATATCGGTGCATTCCGCaaattccaa
aactttttgCTTGGATCTCGGTCACTAACTAATGTAAGCTACTAGTCTCA
ATCGCGGTCGAACGCTAATGAAGTGTTCACAGTATTGGACTTTATAATGT
ATTTCTTCTGGTTTTTCTcgtcctttaaaaaaatttgaaaatttggcaag
gGACTTATTTTAGCAAGGTTCCCTTAAACTAGCATGATTCTCATAAAACA
ATACTCATTGTGAATGGAGTGAGCTTATATTTTAAATGGTATCGTTTGTC
ATCttcaatttgaaaacttttcgtCTTTTTAGCCTGAGAAATTGATTCGC
AGATGGACTTCAGCGCAAACGCTAGAGCTTCTTTCGCTTCATCAAGTCAT
GTCCACAATCGTCATCAACGTGGAAAACGAATCTCTACATACAGGtatat
aacttttgttttccaTGCTGTAACTTTTTCTCATTCATAGCAATTTGATA
AAGTGATTTGTTCTGAAGAGTAcgagattttttctttttccttttttgtt
gtGGGCAGGAAGCTTGTCTAGTAGGTGGGGCGCAATAGAACTTCCGTCAC
AAATAAAGTTGTTACCAATGATATTTTCAGGGTTTTGCACTCTGATACAT
ACAGAGCTCAAATCTGATTAAAAACAACCTATCATAGCTGAAGGAtttcc
aaaatcttaaattttcgaTTTCTCATTTCAAATTTGTGGGTTCAATCCAC
GATCAACGCCAGCTCAGCAAATATGTAGCTTCAGTTAGGTAATCTGATCC
aagcggtaagttactgggagctgagagtatgTGTGGCGTTACCACCTTAG
CATTCGACCTctcaggtctagcgcaaatgaTCTAGCTTCGCcgacgcaaa
ttttttttccatagacgggcggaaatatctttaatggtcggaaatatcat
aagcgtaatggtcggaaatatcatttgatggtcggaaatatcatttgatg
gtcggaaatatccaaaactctgaaaatttgaaaatttaatggtcggaaat
atcccgtgtttttaaaaatgcttcatcaacaaaaaaatgtaagCAAAGAT
GATAGCAAAGGTGGTGTTGTGTGgccaacttgttgtgtgtgccggacaag
ctttttagggagagaaagtggtattgacctttttattcaaacacgactct
tcgttctttcttttcttttctcccTACTGTAAGGgtcattttttggcaaa
attttctctgcatgcactgccagctggatgcactgccagctggatgcact
gtaagggttcgattttggaagccaaattttccgccgaacgtatggtcgtt
ttcagatcgatcCAACGGGGTAAGGTCTAGAATGGGAGGGTGTCCAGGTA
GGGTTGGGACTAGCTTTAGGGTGATTTGAGAGCAGTGGGGGCTAGAGGAG
GAAAAGATacaaaaaagacaagaaagaaagaagagtcGTGTTTAAATAAA
AAGGTTAATACCACTTTCTCTCCCTAAAAACTGTCTACGTCTTTTGTAAA
ATACGGTATAAAGAACTAAGAAACAAAACAGTTCTCAGTCAGtgtcccaa
aaacttaaaataaaaaactactcTTGTCTGGCACAAACAACAAGTTGGCC
ACACTACAGcacctttgctaccatctttgtttacatttttttgctggatg
aagcatttttaaaagtgcgggatatttccgaccattaaattttcaaattt
tcagagttttggatatttccgaccatcaaaagatatttccgaccattaaa
ttttcaaattttcagagttttggatatttccgaccatcaaaagatatttc
cgaccatcaaatgatatttccgaccattacgctatgatattTCCGACCAT
TAAAGATATTTCCGCCCGTCTACGGAAAAAAAATTTGCTTCGCCGACAGC
CACCAGTTGAATAAACGAAACATTCTTAACTGACTATTTATGTTTTTAGT
CTCCACAGACATCGAATGCCCTCCACCACGCAAGATGGTACAATATCCCA
ATCGATTGAAGATCAACAAAGACTTATGTGAACTTTTCTACGGGATCGAT
TCTGACCGTTACTTGCATGAGGTCTGTTCGTTTGTCTGTTTTGATCACGC
TTGAAATTCTCTCTATAGGAGTTGCATCCTTtattcactgacctttatat
accctggatacagcttctcaatcccggtcaaaatctttgatcgcagtttt
taaaaattggtaccctaatggtaacACTACTCAAGGTTCAAAACACATTC
AAGCATTACATTTTATTGAATATAAAATTGATCCACATCGAGTCACTTTT
CTAAAAACTCCGGTATAAGATGGGGATATAGCTTTGTCTAGGGTTTATAA
AGGTTTAGAAAGTTTGATATGCCTTGGAAATATTTTAGTTGATTTATTTA
CAGACTACATTTTATCTAACAAACATCACTATAATATAATTCCTCTTTCC
ACAGCTTCTGTTTGCAACAATAGAAATCCCACACGCCAATGAAtgtgttt
atgacgtcatcatgtATGGATGCTGGTGCAATCTGGCTTTCTCGCTGACC
TTCTTCCAGCAGATACAGGTAAGGGGGCCATGACAATTTTATGTgttcac
tgaaaatttttcacATTATATAGAACAAATACTTTCTTTAAAATGCTTCA
TTGAAATTGCCTAAAATCTTCCACTTAACTGGCATATCCAAATTCAGTTT
TCCATCTAAAGAAATTCCTGCATATATCCCGCATATgaaatgtattttta
tttttccagatGTTTCTAGCCAAAGCCCAAGTCAGTGACTTCGTCAATCT
GTTCCCACTTCTCAAAGGAGTTTTGGTAAGCtttgttgatattttgaaaG
GCTTTTTGGGGATTTGATGGTAGAAATGTTTCACCATCATGAAAAGCAGT
AGCTCAAGTTCTTCTTGTCTTGCTCGCTTCTTTTCGGAGTCCCCTCTATT
TATTCTTCATTTATTTTCTGTATTAGTCTACTTGTTAGACATTCTTATTC
TAACTCATATGGGTTATAGGTTTTCGAAAATACTCCAACAACGCAGATCT
TCTCCCAGGGTTTCCATACGTCTTGTATATCTACTTTTTAACTAAAGTAT
GCGTTTTTTAGTAGAATATTTagaaaatcgggtgttttagagctcACAAA
GCCTCAAGATGGTCTTAAccttttcttgatattttggccatcgaatcctt
atgttcttacatactTTGTTCTTCATATGTCCTTGGAGTTATTATGAACT
CAAGTTATACAATTTCCCCTTTCTACTCTTTAGTGTTTGGACGACCCTCA
CCAAACAAAGCGAATCGAATGTTGCGTTGGTGGTTCAACAGAGGATGATA
TTGAAGGCCTCTTTAGTAAGTGTGAACAAGGTGTTTTTATTTTGGAATTC
TCAAAGGTGCACATTCTCAAGCTAGTCTGACCATAAATTGACGCGTAGAA
AACGTTGTGGCAGAAGtgcatgcttttttataagaatatactttatgtGA
ATGTTCATAatgaaattggcaaaaaaaataagaacatacttAGCTAAGAA
TATCACAATCATGGAATCTGGTGACTGAACCTTAGAATGCCAATTTTTAG
ACCATTTAAACTGTAAATTGTCAATTATCCCTCAGCAAGACTTACTCGAG
GTTTGTATTACATGCTAGATTTGGGATGATTCtctccaaaaagttaagaa
tatccatcatgaaatgaaaaaaaaacaccattcttataaagaaaaagcgt
gtaaaatatcccttcatttctttctttcagATTTGATACATAACTCTCGC
AACGAGAATGGACGTCGCTCGTACGAATGCGTCAAGTTCTTGACCAGTAC
AGCAAAACAAATTCCCAAATTCCGCGAATACATCAGCCATGAGGCTCAAT
ACAAAGATAAACTTGATGGCGCCGTCAAGTGGTTAGAGAAAAAGGTAACA
GGTATACTTGTCTACTTTCTAAGGGAGCAAAGTTTTTCAGAAGCTTATGA
TTTGTATAGATCCTAAtcgactgaggacgacggtaaatcagcatttTAAC
CGTCCTGCTTGTCAAGATTGCCGGCTGCTCCCAAAGCGTTTCAGTCACCC
CGGCGTCCTGAAAAGGGTAGATGCATACAACCTGCTAATAGCTATATGGA
AATGTTTGGGGAGCTAAGTATCAAACGTTCAGATTTCACTTTCACCCTCG
GGGTTTAAGACGCAACAAATTGTTTGGTCACAAATATGGGGGGAGTTATC
TCCCGCTAATGTTCTTGATGAATAAAACCTCTTcatttaaggcttgggga
cacaagaagtttttttcgcgttggtgcaacgCAACATGCTcaatcccacc
aacctgaaacgctttctcgtgtctccaccccactttttcttttaataacg
tTTGTGCTTATGCTTCCCTCACTTTTTGacccatgaaaaaaaaaaccatt
gCATTGCACCGACGCGAAATCCCACAATTCATCCAGTTAAGTAATCCAAT
GAAGATTTTGATTGCATTCTTTCTACATTTTCTTTCAGTTGAGTGAAGGT
TCGTTCTGGCAATCAAACAAAACAAGTTCCACCACTCCCTCCTTTCGAAG
GACCACAAGCGAACAGGTATTCCtctttctgattggtcaagccaTTGAAC
TCTTAGAGAAAAAAatcgttcatggggggtggaagatattattttttcaa
ttatctGCCCCTGGTAgtttcgatttttcaccccctggacaagcatcaaa
tcGACCCCCTGGACACTAAAATTTACCCATGGACATTGCGGTTTTTCAGG
ACTTTTTcgatacccctggacaatatatcttccaccccctaTGGACGGTT
TTCTTCTGGAAGAGCTCAATATTTTATAGGATTCGTGCATCCAATCCCGT
ACTTCCCTATAACAATCCAAAGGCTCCCTCAACAATCAAACACgccaaaa
atgacaaaatttcgGATAATGCTGCGGTACAGCAACTTAGAAAATGATGA
AACTAAGCTGGCGCTTTATCCGCGAAAGACTTTTTGCAGAGTCTTTTTTA
GTCGGCCAGCTTGGTTCGTCTCTCGAATTATCGGCAATTTTAATTGTTAG
tggaaatgttttcatttgattGTTAAGGTAACTTTTAAATTGTTATGGGT
AAGTGCGGTATATAAACATGCTATTTTCAAATCTTAAGAAATAACCTTCT
CTGACTGGAAATAGATTATCGAAAAGATTATCTGTTATTTTAATCgacaa
aaataaagattttagaTTGAGCCGTGGCAACTACTTCTAGCATTGCAATA
TTTGCTGAATAGTTGATAAGTTTAAAAATAATCCGTCTTTGATTGGCGGA
CTGTAAAGTAACGcgtctctgattggctgaattCTTGTTTCAGAACACAC
TGCACGAAGCCACCAAACTTTTGGATGAAATGGAATCTCTTGATGCTTCC
AATACCGCTATTGTTGAAATTACGTGATCTGAAATACTTAAATATCATTG
GTCCTAAATCACGTAATTTCGGAATCCTCCAACCTCATTGGACGATATCC
GATTCCCTAATCACACGATCGAAGATCCTCCAGTCCAGTGAATGATCCTG
AAATCCTTGATAACGTGACCTTGGAATCCTTGAATCTCATTGGCTGACTT
TGCAATATTCAACCACGTTCTCAGAATCTATTGGACGGTGGTATCTAAAT
CCTGACAGACGATTGGTTAGTGTAAACAATGTAAACTCAAGTAATGAAGG
TGCCATGAGTTGTTAAAAATCTTAGTGCATCAGTCTTTTAAAAAGGCTAC
TGTACTGCAGCTGCAATATGTTTGTAACCAGACGGTGtaaatcgaacgaa
tcgaacgccgaatcaattgaacgcaattgaacgcaatcgaataattgcaa
ttcgattgtcgaacgcaatcgaatcgcaatcgaatattNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNaatcgaatcgcaatcgaatattacccaggattt
gctgttcgattgcttcgattacgttcgattgtattcgattacgttcgatt
gtattcgattacgttcgatttaCGTTCGGTACTTAAGCACTCGGCTGCCC
GCTAAAAAGCCCTaacggagtgatccaatttaatttaatcaaactcatca
aacataatcctaatcgaacgaaatcaaaGATTATTCTTCGAATGCAAATG
ACAATCGAACATAGTTCAACTATCCAttgaaccaatctaaccttactcaa
accaatcgaacacaatcgaatattacccaggaatcggccgttcgattgag
attcgattacgttcgacaatcgaatcgcaatcgaatattacccaggaatc
ggccgttcgattgagattcgattacgttcgacaatcgaatcgcaattatt
cgatcgcgttcgattgcgatttttgttcgaagttgttcgattgacaccgt
ctggttgtAACAATGATATAAGTTAGTATCAACAATCGCAGGCGACCGAT
AGATGATTGATAATTCAGGGAAAAGCTCTGACTGCGATACAATATGAAAG
ATAAGCAAACTGTAAATAAACTTCAATCTAAAATGTAATATTTACTCCCA
ATCAATTCAGACTTTTCAACGTTTCAAAGACtttcatcaaatttaaaatt
ttcaagttaggTTTTGGAtagattttttcaattcataatTTTTGTACAAT
ATATCCTTTCGATTTCTCTTTCTTTGAGAACTTTTTttagtttacatttt
atttttttcaatttagctTCCAAATTCTTTTCCACTTAAGATTATCCTTT
CAACATGCCATCTTATAATGTTCTGTCGCGAAAACTCAAGAAATCGATTT
CATAGGGTAGTGAGGtccatgaaagattttttttcgccattttaaaaagt
tttcattggataaaaatatgtaaatgtGTAAATCTGTGTGTGTAAATCTT
ACGAAAAACATCATGTGAAATAGTACCAAAGATgtttttcgaattagaga
aaaatccGGATTACTCAGAGTATTTTATACGGGTTTCCAGCTGAGACAAt
cgatttagttcgaattagagagggttGACTGTATCTCAAACCTTTAGAGG
TTGGAATTTGTCTCTTATCTATCTTAGTATTATTTCGACTTTTTATACAT
TAATATTTATATACCAGTTCTTACACCCTTTTAATAGATCATAGAATAAA
TGTATCTAATGCAATAGATTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005605XLOC_005605Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009991-exon-sc0000101-1491911889:432212..432357TCONS_00009991-exon-sc0000101-1491911889:432212..432357Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:432212..432357TCONS_00009991-exon-sc0000101-1510915933:432212..432357Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:432212..432357TCONS_00009991-exon-sc0000101-1575043694:432212..432357Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1491911889:435243..435871TCONS_00009991-exon-sc0000101-1491911889:435243..435871Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:435243..435871TCONS_00009991-exon-sc0000101-1510915933:435243..435871Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:435243..435871TCONS_00009991-exon-sc0000101-1575043694:435243..435871Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1491911889:436292..436405TCONS_00009991-exon-sc0000101-1491911889:436292..436405Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:436292..436405TCONS_00009991-exon-sc0000101-1510915933:436292..436405Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:436292..436405TCONS_00009991-exon-sc0000101-1575043694:436292..436405Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1491911889:437135..437231TCONS_00009991-exon-sc0000101-1491911889:437135..437231Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:437135..437231TCONS_00009991-exon-sc0000101-1510915933:437135..437231Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:437135..437231TCONS_00009991-exon-sc0000101-1575043694:437135..437231Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1491911889:437815..437934TCONS_00009991-exon-sc0000101-1491911889:437815..437934Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:437815..437934TCONS_00009991-exon-sc0000101-1510915933:437815..437934Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:437815..437934TCONS_00009991-exon-sc0000101-1575043694:437815..437934Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1491911889:438558..438644TCONS_00009991-exon-sc0000101-1491911889:438558..438644Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:438558..438644TCONS_00009991-exon-sc0000101-1510915933:438558..438644Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:438558..438644TCONS_00009991-exon-sc0000101-1575043694:438558..438644Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1491911889:438894..439005TCONS_00009991-exon-sc0000101-1491911889:438894..439005Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:438894..439005TCONS_00009991-exon-sc0000101-1510915933:438894..439005Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:438894..439005TCONS_00009991-exon-sc0000101-1575043694:438894..439005Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1491911889:440561..440682TCONS_00009991-exon-sc0000101-1491911889:440561..440682Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:440561..440682TCONS_00009991-exon-sc0000101-1510915933:440561..440682Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:440561..440682TCONS_00009991-exon-sc0000101-1575043694:440561..440682Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1491911889:441066..441179TCONS_00009991-exon-sc0000101-1491911889:441066..441179Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:441066..441179TCONS_00009991-exon-sc0000101-1510915933:441066..441179Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:441066..441179TCONS_00009991-exon-sc0000101-1575043694:441066..441179Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1491911889:441371..441436TCONS_00009991-exon-sc0000101-1491911889:441371..441436Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:441371..441436TCONS_00009991-exon-sc0000101-1510915933:441371..441436Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:441371..441436TCONS_00009991-exon-sc0000101-1575043694:441371..441436Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1491911889:441895..441976TCONS_00009991-exon-sc0000101-1491911889:441895..441976Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:441895..441976TCONS_00009991-exon-sc0000101-1510915933:441895..441976Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:441895..441976TCONS_00009991-exon-sc0000101-1575043694:441895..441976Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1491911889:442392..442555TCONS_00009991-exon-sc0000101-1491911889:442392..442555Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:442392..442555TCONS_00009991-exon-sc0000101-1510915933:442392..442555Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:442392..442555TCONS_00009991-exon-sc0000101-1575043694:442392..442555Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1491911889:443150..443227TCONS_00009991-exon-sc0000101-1491911889:443150..443227Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:443150..443227TCONS_00009991-exon-sc0000101-1510915933:443150..443227Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:443150..443227TCONS_00009991-exon-sc0000101-1575043694:443150..443227Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1491911889:444005..445885TCONS_00009991-exon-sc0000101-1491911889:444005..445885Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1510915933:444005..445885TCONS_00009991-exon-sc0000101-1510915933:444005..445885Clytia hemisphaericaexon
TCONS_00009991-exon-sc0000101-1575043694:444005..445885TCONS_00009991-exon-sc0000101-1575043694:444005..445885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:432212..445885 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35797	0.863482	2.10651	2.63243	0.681295	0.591891	0.163511	0.521246	0.535985	2.17611e-10	0.412218	0.599287	0.553107	0.802737	1.47815	1.12546	0.605076	1.18513	1.25326	0.681507	0.522763	1.12131	1.45766	0.36169	0	0.342526	2.11393	1.71654	2.17041	1.32743
Blast
[Close]
BLAST of TCONS_00009991 vs. Swiss-Prot (Human)
Match: UBP24 (Ubiquitin carboxyl-terminal hydrolase 24 OS=Homo sapiens GN=USP24 PE=1 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 4.009e-42
Identity = 136/425 (32.00%), Postives = 223/425 (52.47%), Query Frame = 3 
Query:  717 IQLSTQYLINTYFKTAKSFRTDLEQWKVTLENLFNSNLVTNKWFCDFFGQPQQRPYLVMYLLECPEADTRQLFSTWLIQACRNILNQLNKVTDEIDALISQLLTLLDSEAGHHIKQSSQYFSFFHRY-SLLSFEALSHLLDIGAFRKFQNFLLGSRSLTNPEKLIRRWTSAQTLELLSLHQVMSTIVINVENESLHTVSTDI-ECPPPRKMVQYPNRLKINKDLCELFYGIDSDRYLHELLFATIEIPHANECVYDVIMYGCWCNLAFSLTFFQQIQMFLAKAQVSDFVNLFPLLKGVLCLDDPHQTKRIECCVGGSTEDDIEGLFNLIHNSRNENGRRSYECVKFLTSTAKQIPKFREYISHEAQYKDKLDGAVKWLEKKLSEGSFW--QSN--KXXXXXXXXXXXXXEQNTLHEATKLLDEME 1973
            +QL+ Q+L  TY +T K  R D E+W  T+E L + +    +W  ++F   + R  + ++LLEC   + R   +T L +   + L   +K+   +  L+  LL LLD +   + K  +QYF  F+ +       A   LL   A R   +FLLG+    N    IRRW+SAQ  E  +LH  ++ +V++ +  S   V+  I +  PP  +      L +++++  L +  +   YL E++FA  E+  +   + ++++Y C+CN  FS T    I+  L  A   +  N F LL  +L ++DP Q +R++      TE+   GL  L+H+S + +  R Y+CVKFL + A++ P  +EY    + +      AV+WL+KK+SE  +W  QSN    +ST  +F+RT S Q+TL  AT LL+E E
Sbjct: 2166 LQLAIQFLFQTYLRTKKKLRVDTEEWIATIEALLSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVRVAVATILEKTLDSALFYQDKLKS-LHQLLEVLLALLDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHMISFLLGASRQNNQ---IRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISIAPSSPLLPLHEEVEALLFMSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHFIKNQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVF--ETEN---GLLALMHHSNHVDSSRCYQCVKFLVTLAQKCPAAKEYFKENSHH---WSWAVQWLQKKMSE-HYWTPQSNVSNETSTGKTFQRTISAQDTLAYATALLNEKE 2577
The following BLAST results are available for this feature:
BLAST of TCONS_00009991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP244.009e-4232.00Ubiquitin carboxyl-terminal hydrolase 24 OS=Homo s... [more]
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