|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009988 ID=TCONS_00009988|Name=TCONS_00009988|organism=Clytia hemisphaerica|type=transcript|length=10017bp transcript from alignment at sc0000101:380253..445885+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009988 ID=TCONS_00009988|Name=TCONS_00009988|organism=Clytia hemisphaerica|type=transcript|length=65633bp|location=Sequence derived from alignment at sc0000101:380253..445885+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009988 vs. Swiss-Prot (Human)
Match: UBP24 (Ubiquitin carboxyl-terminal hydrolase 24 OS=Homo sapiens GN=USP24 PE=1 SV=3) HSP 1 Score: 535.798 bits (1379), Expect = 3.235e-153 Identity = 296/782 (37.85%), Postives = 464/782 (59.34%), Query Frame = 1
Query: 196 MESQPSDEHITMLMGMGFGDITDIRRALKLAKNDLNDAVAILTGEDS---RGGFGQADIEMKEVSNSTEVYNNNNSPVMFGPQLPVVEGGKQ------PTECIDITEEEEVAENIDMAIEDMPDEFPTTNMYELEDRVFTENWSIPYKKGESLAKCLYGAIKLASQQKAETDKDCERFLDRVAVECFKKLLTSQAVKKWSNDIHEGVFNMIQLFIDFMAERLKYSPPPLKLLGTLSLAFDPDSEFHFKNRTHKWNRGHYEDIFGFDKCPAVSPDYNTYKAPFGWLVDLINRFVQKGGLDSIIDIVETMDKMSPNVLASLLKPFGACAVYLNAEVTGYKLGGMADKVVQFVSQMEAXXXXXXXXXXXXXLLRSLRKVCDVLWADKTSNIVELHLSTILKMLQLPQFNPRMNALKELSRLIKDAERNQC--KEITVDVISKWLLDNKVLSIAFSSSLHHAQYSEKLQKIVDFASSKISLEELTTIWDMQIGKHITVVDNIHSIISSAIQNFSVEQMEHFLKLLEKSWDEEDDKSKERLLLLLGKVGREIKDNQIVTQILDLLWNFSHLEEDLPLYLINQAVQSHIDVLCDSSLITIATKTDYVSKCVQDIK---------------------NN---TWVVPGIRHILCNLESIAKKN-MKNTRPTIQDIQQNNQLMKLLTSSLSQSHKTATSSILPGTLSGETIINNSYKYAEIIMTHLKLIQFLLKDGNLYLSYGRAKEIWDCLMLDENNCDGDYETCLEWFYECIRDLQADTLKELFTQKL 2433
MES+ ++H+T L+ MGF D IR+AL+LAKND+N+AVA+LT E GG+ D + G P ++ + E+ EN + + E + EFPTTN+YELE RV T++WSIPYK+ ESL KCL + LA +E+D++C RF+DR E FKKLLTS AV KW +IHEG++NM+ L I+ +AER+K P P LLG L++AF+PD+E+HFKNR K ++ ++ ++FG AVSP K P GW+VDL+N+F + GG +I + + D + +++L++P G CA YLN+ V L + +Q V +E D+KDK + + +LL +++ +C D + + +L L +L+ML+ P F+ +MN+LKE+++LI+D+ ++ I D + WL++N VLSIA ++ AQY ++++ I++ SK+SL+ELT IW +Q G+ TV++NIH+II++A F+ +Q+ H L++KSW+ E D+ +++LL L+G++GRE + ++LD+LW +HL LP LI QA++ H+ +L D+ + A K Y+ KC++DIK NN WVVP +R + S K+ K + IQD+++N +++KL+T SL H+ A + PG LSG T+++ Y Y E + HLK + F L++ LYL + RAKEIW+CL+ ++ C+ D E C EWF + DL++D ++LF +K+
Sbjct: 1 MESE-EEQHMTTLLCMGFSDPATIRKALRLAKNDINEAVALLTNERPGLDYGGYEPMDSGGGPSPGPGGGPRGDGGGDGGGGGPSRGGSTGGGGGFDPPPAYHEVVDAEKNDENGNCSGEGI--EFPTTNLYELESRVLTDHWSIPYKREESLGKCLLASTYLARLGLSESDENCRRFMDRCMPEAFKKLLTSSAVHKWGTEIHEGIYNMLMLLIELVAERIKQDPIPTGLLGVLTMAFNPDNEYHFKNRM-KVSQRNWAEVFGEGNMFAVSPVSTFQKEPHGWVVDLVNKFGELGGFAAIQAKLHSED-IELGAVSALIQPLGVCAEYLNSSVVQPMLDPVILTTIQDVRSVEEKDLKDKRLVSIPELLSAVKLLCMRFQPDLVTIVDDLRLDILLRMLKSPHFSAKMNSLKEVTKLIEDSTLSKSVKNAIDTDRLLDWLVENSVLSIALEGNIDQAQYCDRIKGIIELLGSKLSLDELTKIWKIQSGQSSTVIENIHTIIAAAAVKFNSDQLNHLFVLIQKSWETESDRVRQKLLSLIGRIGREARFETTSGKVLDVLWELAHL-PTLPSSLIQQALEEHLTILSDAYAVKEAIKRSYIIKCIEDIKRPGEWSGLEKNKKDGFKSSQLNNPQFVWVVPALRQLHEITRSFIKQTYQKQDKSIIQDLKKNFEIVKLVTGSLIACHRLAAAVAGPGGLSGSTLVDGRYTYREYLEAHLKFLAFFLQEATLYLGWNRAKEIWECLVTGQDVCELDREMCFEWFTKGQHDLESDVQQQLFKEKI 776 HSP 2 Score: 424.476 bits (1090), Expect = 6.234e-119 Identity = 293/774 (37.86%), Postives = 431/774 (55.68%), Query Frame = 1
Query: 5911 NLEASLEQFVHTEVMEGENAYYCEKCRDRRTTVKRTCIKKLPGILVIQLKRFWYDWERNRAIKFDDFFKFPTILDMEPYTKEGIKKQE-----------LDQQKHGSNTSHIEPMRVVTDNQRYYELVGVVVHSGQASAGHYYSYIKNRQSTVGDYNKWYKFNDTHVEKFDMTDEALHQELFGGEYKVPQTEGNNQYPENRVRNWNAYMLFYESM-DKNRLPNTHFSTHDARGQMFGDIFRXXXXXXXXXXXXXXXXXXXXKDSLSQLSALIRKGEKKGLFTENMPTYIKRNVNEANKEFMCNCDIYNKEYFLFIRELCNVNTKPSIVRKILSEENSDEINEDKAIISLIQLSTQYLINTYFKTAKSFRTDLEQWKVTLENLFNSNLVTNKWFCDFFGQPQQRPYLVMYLLECPEADTRQLFSTWLIQACRNILNQLNKVTDEIDALISQLLTLLDSEAGHHIKQSSQYFSFFHRY-SLLSFEALSHLLDIGAFRKFQNFLLGSRSLTNPEKLIRRWTSAQTLELLSLHQVMSTIVINVENESLHTVSTDI-ECPPPRKMVQYPNRLKINKDLCELFYGIDSDRYLHELLFATIEIPHANECVYDVIMYGCWCNLAFSLTFFQQIQMFLAKAQVSDFVNLFPLLKGVLCLDDPHQTKRIECCVGGSTEDDIEGLFNLIHNSRNENGRRSYECVKFLTSTAKQIPKFREYISHEAQYKDKLDGAVKWLEKKLSEGSFW--QSN--KXXXXXXXXXXXXXEQNTLHEATKLLDEME 8178
+LE SL+QFV EV+EG NAYYCEKC+++R TVKRTCIK LP +LVI L RF +DWE R+IK+D+ +FP +L+MEPYT G+ +Q+ +DQ GS + +T+N YELVGV+VHSGQA AGHYYS+IK+R+ KWYKFNDT +E+FD+ DE L E FGGEY+ + N Y + R R WNAYMLFY+ + D+N S Q D+ S P+SP S SS P + D LS L+ L++KGEKKGLF E MP I + V + N +FM N D+Y+ +YF F+ L ++N + + A +SL QL+ Q+L TY +T K R D E+W T+E L + + +W ++F + R + ++LLEC + R +T L + + L +K+ + L+ LL LLD + + K +QYF F+ + A LL A R +FLLG+ N IRRW+SAQ E +LH ++ +V++ + S V+ I + PP + L +++++ L + + YL E++FA E+ + + ++++Y C+CN FS T I+ L A + N F LL +L ++DP Q +R++ TE+ GL L+H+S + + R Y+CVKFL + A++ P +EY + + AV+WL+KK+SE +W QSN +ST +F+RT S Q+TL AT LL+E E
Sbjct: 1837 SLEISLDQFVRGEVLEGSNAYYCEKCKEKRITVKRTCIKSLPSVLVIHLMRFGFDWESGRSIKYDEQIRFPWMLNMEPYTVSGMARQDSSSEVGENGRSVDQGGGGSPRKKV----ALTEN---YELVGVIVHSGQAHAGHYYSFIKDRRGC--GKGKWYKFNDTVIEEFDLNDETLEYECFGGEYRPKVYDQTNPYTDVRRRYWNAYMLFYQRVSDQNSPVLPKKSRVSVVRQEAEDLSLSAPSSPEISPQSSPRPHRPNNDRLSILTKLVKKGEKKGLFVEKMPARIYQMVRDENLKFMKNRDVYSSDYFSFVLSLASLN----------ATKLKHPYYPCMAKVSL-QLAIQFLFQTYLRTKKKLRVDTEEWIATIEALLSKSFDACQWLVEYFISSEGRELIKIFLLECNVREVRVAVATILEKTLDSALFYQDKLKS-LHQLLEVLLALLDKDVPENCKNCAQYFFLFNTFVQKQGIRAGDLLLRHSALRHMISFLLGASRQNNQ---IRRWSSAQAREFGNLHNTVALLVLHSDVSSQRNVAPGIFKQRPPISIAPSSPLLPLHEEVEALLFMSEGKPYLLEVMFALRELTGSLLALIEMVVYCCFCNEHFSFTMLHFIKNQLETAPPHELKNTFQLLHEILVIEDPIQVERVKFVF--ETEN---GLLALMHHSNHVDSSRCYQCVKFLVTLAQKCPAAKEYFKENSHH---WSWAVQWLQKKMSE-HYWTPQSNVSNETSTGKTFQRTISAQDTLAYATALLNEKE 2577 HSP 3 Score: 376.326 bits (965), Expect = 3.098e-104 Identity = 217/561 (38.68%), Postives = 327/561 (58.29%), Query Frame = 3
Query: 4272 TSSVLESVSPTVKMVXXXXXXXXXXXXXSSLLQVSWSAAAGQLQLNTKQNSTTPVASSSG---EAYSNPFTHSKQQTSSNSSMLHYQLKAGLCLSQETVSIMDSVLANNSLELLVMCLQLRPNLMDLFYKLPNVDDFIVDVLTGSPSFEVRAAASLHFSVLSMTLNNTMD--THPKAFLIKTLLKAHLPVWNISGTIRGHAYKILTQCEQYFEXXXXXXXXXXXXAQTEYNINPSQLLEGELNFLQN-------------SDNLNVEMLTGHLSFSSALFTCEGIDKTTQGCRFLTYLLNEFLFSASKL---EHANTSLSTFSVLDINIHSFNSQCRQQAFNLLLTTADRCPGNIASIADELTRRHH--NQVISKEWAFQPAISARPANGFVGLSNAGATCYMNSILQQLYMQPGIREALLKVEDQQSTTKDTILSQVQNIFGHLLESQTQFFKPEGFWKTFKLWGEPVNLREQQDALEFYTNITDQLDEHLKTLKKEEIFKKAFSGTFVDQKTCSDCSHCFERDEPFSSLPVTVKS-GNLEASLEQFVHTEVMEGENAYY 5882
+S +E + P ++ I+ + +F ++ +++SW+AAAG+L L S+ P+ S+ N + S SS S L AG+C+ Q++VS DS++A +L LLV CLQLR + FY LP V DFI+D+L GSPS E+R A LS T + P FL+ +L A LP+W+ + +RG ++L+QC +YF+L LL L+ S + I+P+ +LE E+ +L N +DN+ +L GHL L + G +K G + LL++FLF AS++ H+ + S D + + R A+ +L+ AD P N+ I EL HH + ++KE+ + P + +R ++GFVGL N GATCYMN++ QQLYMQPG+ E+LL V+D D++ QVQ++FGHL+ES+ Q++ PE FWK FK+W + + +REQQDA EF+T++ DQ+DE+LK + +++IFK F G + DQK C DC H +ER+E F +L + V S +LE SL+QFV EV+EG NAYY
Sbjct: 1304 SSIRVEEIIPAARVAIQTMEVSDFTSTVACFMRLSWAAAAGRLDL---VGSSQPIKESNSLCPAGIRNRLSSSGSNCSSGSEGEPVALHAGICVRQQSVSTKDSLIAGEALSLLVTCLQLRSQQLASFYNLPCVADFIIDILLGSPSAEIRRVACDQLYTLSQTDTSAHPDVQKPNQFLLGVILTAQLPLWSPTSIMRGVNQRLLSQCMEYFDLRCQLLDDLTTSEMEQLRISPATMLEDEITWLDNFEPNRTAECETSEADNI---LLAGHLRLIKTLLSLCGAEKEMLGSSLIKPLLDDFLFRASRIILNSHSPAGSAAISQQDFHPKCSTANSRLAAYEVLVMLADSSPSNLQIIIKELLSMHHQPDPALTKEFDYLPPVDSRSSSGFVGLRNGGATCYMNAVFQQLYMQPGLPESLLSVDDDTDNPDDSVFYQVQSLFGHLMESKLQYYVPENFWKIFKMWNKELYVREQQDAYEFFTSLIDQMDEYLKKMGRDQIFKNTFQGIYSDQKICKDCPHRYEREEAFMALNLGVTSCQSLEISLDQFVRGEVLEGSNAYY 1858 HSP 4 Score: 334.339 bits (856), Expect = 1.999e-91 Identity = 209/508 (41.14%), Postives = 299/508 (58.86%), Query Frame = 3
Query: 2466 CLEWFYECIRDLQADTLKELFTQKLLKTDVSRMKEMGLKCFIAYFETVNTNEHRIHRSGSSLVVDKTELIGMPYLWQLVLKSPYGNIAEEATQYLIDVSFSWLSNKLKKVDSFSIHKKFMGECCKRLEHLLSQLKENEDCSPK-EGKITRTFK----KPHPIKGSSIE---RSKVFLSIERLLHLTCNYIITVEDGYALPRAFPSHGSCYHGYPIQIHITCESNKTEIDVMSHSNERLSAVRQKIANKLDCPVEGLQILMNDKTLLSDKDHKLLLQLSFEKKQNLTAKLLATIKXXXXXXXXXXXXXXXXXXXXNDSVSPVNKMDREKCLPGFLLAVEYRIFDKLYTLAELEEPQITCVLRNLLQQLPTDGDVLQAIDVFS-------------FQNPMLCSPGTRAGYTTSSTSVLENYFKCTAPKMSTFRVLYNLQVLSSKLMPVLGID-APNVTQSFRENWLNAGGLRLIMNILLPDTLPSNADYELRQSCYYIILQLARFLLCG 3923
C EWF + DL++D ++LF +K+LK + + G F +FE VN +HR+ R G+ L V+K ELIGM ++W++ ++SP IA EA Q +I+ S+ L+ +LKK DS S+HKKF+ +C RLE S L P +TR K P +S++ RS + IERLL L Y+IT+ED Y++PR HG+ +HG+ + +++T ES K V +HSNE + +VR KIA +L PV+ +QI ND L +KD KLL QL F +Q LT K + + A + S+S+SS + S + M++EK LPG ++A+ +FD LY LA LEEP+IT +R LL +PTD + +A+D Q+ S ++ + S++S+LE+ F+ AP MSTFRVLYNL+VLSSKLMP D A + +SF EN+L AGGL L++N++ D++PS DYE RQ Y I LQLARFLL G
Sbjct: 752 CFEWFTKGQHDLESDVQQQLFKEKILKLESYEITMNGFNLFKTFFENVNLCDHRLKRQGAQLYVEKLELIGMDFIWKIAMESPDEEIANEAIQLIINYSYINLNPRLKK-DSVSLHKKFIADCYTRLEAASSALG-----GPTLTHAVTRATKMLTATAMPTVATSVQSPYRSTKLVIIERLLLLAERYVITIEDFYSVPRTILPHGASFHGHLLTLNVTYESTKDTFTVEAHSNETIGSVRWKIAKQLCSPVDNIQIFTNDSLLTVNKDQKLLHQLGFSDEQILTVKTSGSGTPSGSSADSSTSSSSSSSGVFSSSYA----MEQEKSLPGVVMALVCNVFDMLYQLANLEEPRITLRVRKLLLLIPTDPAIQEALDQLDSLGRKKTLLSESSSQSSKSPSLSSKQQHQPSASSILESLFRSFAPGMSTFRVLYNLEVLSSKLMPTADDDMARSCAKSFCENFLKAGGLSLVVNVMQRDSIPSEVDYETRQGVYSICLQLARFLLVG 1249 The following BLAST results are available for this feature:
BLAST of TCONS_00009988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.