|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009987 ID=TCONS_00009987|Name=TCONS_00009987|organism=Clytia hemisphaerica|type=transcript|length=1876bpRun BLAST on NCBI transcript from alignment at sc0000101:380253..410793+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009987 ID=TCONS_00009987|Name=TCONS_00009987|organism=Clytia hemisphaerica|type=transcript|length=30541bp|location=Sequence derived from alignment at sc0000101:380253..410793+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00009987 vs. Swiss-Prot (Human)
Match: UBP24 (Ubiquitin carboxyl-terminal hydrolase 24 OS=Homo sapiens GN=USP24 PE=1 SV=3) HSP 1 Score: 398.667 bits (1023), Expect = 9.863e-121 Identity = 220/566 (38.87%), Postives = 346/566 (61.13%), Query Frame = 1
Query: 196 MESQPSDEHITMLMGMGFGDITDIRRALKLAKNDLNDAVAILTGEDS---RGGFGQADIEMKEVSNSTEVYNNNNSPVMFGPQLPVVEGGKQ------PTECIDITEEEEVAENIDMAIEDMPDEFPTTNMYELEDRVFTENWSIPYKKGESLAKCLYGAIKLASQQKAETDKDCERFLDRVAVECFKKLLTSQAVKKWSNDIHEGVFNMIQLFIDFMAERLKYSPPPLKLLGTLSLAFDPDSEFHFKNRTHKWNRGHYEDIFGFDKCPAVSPDYNTYKAPFGWLVDLINRFVQKGGLDSIIDIVETMDKMSPNVLASLLKPFGACAVYLNAEVTGYKLGGMADKVVQFVSQMEAXXXXXXXXXXXXXLLRSLRKVCDVLWADKTSNIVELHLSTILKMLQLPQFNPRMNALKELSRLIKDAERNQC--KEITVDVISKWLLDNKVLSIAFSSSLHHAQYSEKLQKIVDFASSKISLEELTTIWDMQIGKHITVVDNIHSIISSAIQNFSVEQMEHFLKLLEKSWDEEDDKSKERLLLLLGKVGREIKDNQIVTQILDLLWNFSHL 1860
MES+ ++H+T L+ MGF D IR+AL+LAKND+N+AVA+LT E GG+ D + G P ++ + E+ EN + + E + EFPTTN+YELE RV T++WSIPYK+ ESL KCL + LA +E+D++C RF+DR E FKKLLTS AV KW +IHEG++NM+ L I+ +AER+K P P LLG L++AF+PD+E+HFKNR K ++ ++ ++FG AVSP K P GW+VDL+N+F + GG +I + + D + +++L++P G CA YLN+ V L + +Q V +E D+KDK + + +LL +++ +C D + + +L L +L+ML+ P F+ +MN+LKE+++LI+D+ ++ I D + WL++N VLSIA ++ AQY ++++ I++ SK+SL+ELT IW +Q G+ TV++NIH+II++A F+ +Q+ H L++KSW+ E D+ +++LL L+G++GRE + ++LD+LW +HL
Sbjct: 1 MESE-EEQHMTTLLCMGFSDPATIRKALRLAKNDINEAVALLTNERPGLDYGGYEPMDSGGGPSPGPGGGPRGDGGGDGGGGGPSRGGSTGGGGGFDPPPAYHEVVDAEKNDENGNCSGEGI--EFPTTNLYELESRVLTDHWSIPYKREESLGKCLLASTYLARLGLSESDENCRRFMDRCMPEAFKKLLTSSAVHKWGTEIHEGIYNMLMLLIELVAERIKQDPIPTGLLGVLTMAFNPDNEYHFKNRM-KVSQRNWAEVFGEGNMFAVSPVSTFQKEPHGWVVDLVNKFGELGGFAAIQAKLHSED-IELGAVSALIQPLGVCAEYLNSSVVQPMLDPVILTTIQDVRSVEEKDLKDKRLVSIPELLSAVKLLCMRFQPDLVTIVDDLRLDILLRMLKSPHFSAKMNSLKEVTKLIEDSTLSKSVKNAIDTDRLLDWLVENSVLSIALEGNIDQAQYCDRIKGIIELLGSKLSLDELTKIWKIQSGQSSTVIENIHTIIAAAAVKFNSDQLNHLFVLIQKSWETESDRVRQKLLSLIGRIGREARFETTSGKVLDVLWELAHL 561 The following BLAST results are available for this feature:
BLAST of TCONS_00009987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.