TCONS_00009953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009953
Unique NameTCONS_00009953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009953 ID=TCONS_00009953|Name=TCONS_00009953|organism=Clytia hemisphaerica|type=transcript|length=299bp
CGATACTATTTTCtaaagtcattaaaaaatgatttcCACAAAAATTACTT
CCCTTAATATTTGAACTAAAGTctatttcgaaaaattgacagTTTGCAAA
CTTCAATACATTTTTCTTGAAGGGAAAAAATACAACTgcaagtaatacct
cgttgagAAGAACTGAGCTcgttcaaaagtgttttcttttcaGGTTTTTC
ATATCCTTCATTGAGCAAAAATGGCttctggatttttcaaaaaatggctt
CTGATCCCAGAAAGGTATAAACAATCTgaaaacatatttgaaatcagcg
Run BLAST on NCBI

transcript from alignment at sc0000100:280317..280615

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009953 ID=TCONS_00009953|Name=TCONS_00009953|organism=Clytia hemisphaerica|type=transcript|length=299bp|location=Sequence derived from alignment at sc0000100:280317..280615 (Clytia hemisphaerica)
cgctgatttcaaatatgttttcAGATTGTTTATACCTTTCTGGGATCAGa
agccattttttgaaaaatccagaaGCCATTTTTGCTCAATGAAGGATATG
AAAAACCtgaaaagaaaacacttttgaacgAGCTCAGTTCTTctcaacga
ggtattacttgcAGTTGTATTTTTTCCCTTCAAGAAAAATGTATTGAAGT
TTGCAAActgtcaatttttcgaaatagACTTTAGTTCAAATATTAAGGGA
AGTAATTTTTGTGgaaatcattttttaatgactttaGAAAATAGTATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005583XLOC_005583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009953-exon-sc0000100-1491911889:280317..280615TCONS_00009953-exon-sc0000100-1491911889:280317..280615Clytia hemisphaericaexon
TCONS_00009953-exon-sc0000100-1510915933:280317..280615TCONS_00009953-exon-sc0000100-1510915933:280317..280615Clytia hemisphaericaexon
TCONS_00009953-exon-sc0000100-1575043694:280317..280615TCONS_00009953-exon-sc0000100-1575043694:280317..280615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:280317..280615 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.583266	0.303883	0.445637	0	2.12309	0.227454	3.14475	3.5581	0	3.27126	0.448925	1.24474	0.533417	0.793118	1.25296	0.732078	0	3.16534	0.558157	0	8.42911	6.49702	1.19149	2.87859	0	0.518668	5.52623	1.98863	2.34144	3.36004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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