TCONS_00009945 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009945
Unique Name	TCONS_00009945
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	231

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000100:557373..561837-

transcript sequence

>TCONS_00009945 ID=TCONS_00009945|Name=TCONS_00009945|organism=Clytia hemisphaerica|type=transcript|length=231bp
aggCAAATCAGAATCTAATTTAGATGAAGTAATTGAAAcgcttcaaaaga
aaaatatggttAACGATAAAACAGCTTTGTGCACGAAGAAGGCAACGGAG
ATACTGTTTGACATTGCAAAATATGAGAATTCAGATGATGCAAATTTCTA
TTCTACACGTCAAATTGCCATGGGCTTGctggaaaaaaagtttaaacGAA
GTGCCAGTGAATCCAACTTAACGAGGTAAGT

Run BLAST on NCBI

transcript from alignment at sc0000100:557373..561837-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009945 ID=TCONS_00009945|Name=TCONS_00009945|organism=Clytia hemisphaerica|type=transcript|length=4465bp|location=Sequence derived from alignment at sc0000100:557373..561837- (Clytia hemisphaerica)
AGGCAAATCAGAATCTAATTTAGATGAAGTAATTGAAACGCTTCAAAAGA
AAAATATGGTTAACGATAAAACAGCTTTGTGCACGAAGAAGGCAACGGAG
ATACTGTTTGACATTGCAAAATATGAGAATTCAGATGATGCAAATTTCTA
TTCTACACGGTATGCCTATTAAATCACCTGAACAATTCAAGAGGATTTGC
TACATGCCTTTTTATAAGAATACAGTTTATAAGAATATTCATGATGAAAT
TTGTTTAAAAAAATTAAGAATAATATGGGATAAAGTTTCCGCGGTGCTAG
TAATGCGTATTTCAACTAACAACATGCTTACTTGGTTGTACACAAAATTG
TAAAAATATTCTCTCCCAACAGTGTCATTTTTAAAGCATTTTTATCTGTA
AATTGCCAATTACAACCCCGGAGGCTCAAAACTTTCACGAAAATGTCATT
TTTTTGCTTCGGATATGCATTACATGTTAAAAATTTAGGTTCAATTTTAA
TCCTAATCTAAGAAATATTTTAGAATGATTTTCCCCAAATAGTTAAGAAT
ATCCACGATGAAATGGAAAAACACCATTCTTATAAAAAAAGTTTAGTAAT
AAAGGGGACCTACATATATATTTTTTTGGGATGGGGTGGCATTTACTGTA
GCCTTTTCCTTCCATTACATCTCTCATACATGTGCATTTATTTCATTAAG
GGGGTAGTCATATGAGATTTTGAAAATTGGTGAAAAAATTATCAATTTCG
GGATTTAGGGCTTTTTAGAATCCTTTATCCTTCCTGAACATACCCTGAAA
ATTTCAAGGCCGTAGCATAAATATCTGCCGATATATTGGGTTTCTTATGA
GCCCTGATATACAATTTTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAC
TTGGAGATTCCCGGAGCACGTGAAAGGCCATTTTTTTCAAAAAACTTGGA
CTATTTTAGTATTTCCAGTACCTTTTCAACATTAAAAGTTATGTATCAAT
CCATTTTGGTCAACCACAGTAAAAATTTTGTAAAACGGTCAATGTATCGC
AGAAAAATTGAGAAAAACCTCTATTTTCAACTTTCTGCGCCGTTTTCTCA
AAACACGTTTTAGGGGGTTTTCGCGCGGTTAGTGTAAAACGCAGGTCACA
GGTCACAGGTCAACAAAGTGCAGACCGGAAAAAAAGATAATAAGATCATA
ACATAAAATCAATACATAACTCATTAAATTACAAAAAAGTAATACATGTT
ATTTAGATTATAAAATGACAATTGAATAGAATAACAACCTAGTGACACTT
ACTTACAAAAATAATGACAAAATCATAAAATATGATGCCTAACAAGACAA
AAGCACGAAAAATATTTATTATACAAAATGTGATGTGGATGGTGTGAATG
GATAAAAAATGGCACCAAAACAGAAGCTTGCATGGNTGTGTTTTCCAAAC
ATTTTCCTCTGCAATGACATTGATTAGAGTCAACCTGTCATCACTGACCT
GTGACCTGTGACCTGCGACCTGTGACCTATGACCTGCGTTTTACACTAAC
CGGTTTTCGCGCACCTTGTCAGCCTTTTCTCAGGATTGAGAAAAGCTATT
GACTTGAAATTTTCAGGGTAGTTTTCCATTATGGTAAGCTTCAGGATGAA
TGAAGCAGTTTTTCAAAAAAATCATTTTTTGACTTTTAAACTGAAAAAGT
ACAAATTTTAGGTTCCAGACCCCCTGGCTTGAAATTTTGAAANNNNNNNN
NNNNNNNNNNNNNCTGGTCACACTTTCTTAAAGAAAGCGCAACTTCTGAA
ATTTGGTTTTTATTTTAGTAAGTGAGGACAGCGCTAAATTCGAATTTCCC
ACTGTAAATTTTTTGAGTCCAAAATCGGACTCACAGCTCTGACCCGTCAA
GTATTCATCAGATTTAAAAAAAATACGCAGACGGGTTCCTGTCTAGCATG
GTCCCTAAGAGAGTGGTTTAAGGATGGAACTAATTAATTATTCAGTTATT
ATTTTAACGTCTTAATGACAATTTTTGACAAAAATATTAACATAATCATA
AAATCTGATGCAAGAAAAGACAAACACACGAAAAATATTTATAATACAGA
ATGTGATGTTGATAGTGTGAATGGATATAAAACGGCACCAATCAGAAGCT
TGTGAGGTCCCTAAGAGAGTGGTTTTAGAAGGATANNNNNNNNNNNNATA
AAACTAATTAATCATTCAATTGTTATTTTAATGACTTAATGACAATTTTT
GACAAAAATATTGACAGAATCACAAAATATCATGTCTTACAAGAGAAAAA
CAACAAAAATATTTAGCATACCGAATATGATGATGACAATATGGCTGGAT
ATAAAATTACACCAATCAGAAGCTCGTGAGTTCTCTGAGAAGGTAGTTTT
AGAGCGATGTGTTTTATTATATGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTGTGGAAAGTTTCA
TTGAAAAATATTTACTACTTCACAAGATATAACAAAAAGTTTAAAAAATG
ACATTTCAAATTTCTCATATGACTACCCCCTTAAAGTAATTTTCTTTAAT
TGGGAGCATAATCAAATTATTTATTGAATTTGTCTGATTTTAGTCAAATT
GCCATGGGCTTGCTGGAAAAAAAGTTTAAACGAAGTGCCAGTGAATCCAA
CTTAACGAGGTAAGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005575	XLOC_005575	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009945-exon-sc0000100-1575043694:561679..561837	TCONS_00009945-exon-sc0000100-1575043694:561679..561837	Clytia hemisphaerica	exon
TCONS_00009945-exon-sc0000100-1575043694:557373..557444	TCONS_00009945-exon-sc0000100-1575043694:557373..557444	Clytia hemisphaerica	exon
TCONS_00009945-exon-sc0000100-1510915933:561679..561837	TCONS_00009945-exon-sc0000100-1510915933:561679..561837	Clytia hemisphaerica	exon
TCONS_00009945-exon-sc0000100-1510915933:557373..557444	TCONS_00009945-exon-sc0000100-1510915933:557373..557444	Clytia hemisphaerica	exon
TCONS_00009945-exon-sc0000100-1491911889:561679..561837	TCONS_00009945-exon-sc0000100-1491911889:561679..561837	Clytia hemisphaerica	exon
TCONS_00009945-exon-sc0000100-1491911889:557373..557444	TCONS_00009945-exon-sc0000100-1491911889:557373..557444	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000100	supercontig	sc0000100:557373..561837 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.11846	0	3.53088	1.15147	2.80361	2.21545	9.35498	3.75344	5.25574	11.9351	0	5.53834	10.37	7.89749	8.85383	20.2699	5.46238	12.7972	12.155	10.4067	4.02014	5.88265	9.53485	10.8357	0	0	7.12672	6.08466	6.9225	17.6323

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00009945 vs. Swiss-Prot (Human)

BLAST of TCONS_00009945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00009945 (transcript) - C. hemisphaerica