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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009944 ID=TCONS_00009944|Name=TCONS_00009944|organism=Clytia hemisphaerica|type=transcript|length=495bp
TGCATGAGGTTGATTCCTTTTACTGTCCGAACTGTCTTGAAAACATGCCT
TCAACTGAAGCCAAGATCAAGAAAAATCGATGTGCAAACTGTTTTGATTG
TCCCAGTTGTGGACATAGTTTGTCGGTTCGAGCAACGGCTGTTTCAGTAG
GTGGAAATCCACTTGATGAATCACCAAAAACAAATGTCAAGAAAATGCAT
TATTTGAATTGTGGTTTTTGTCGTTGGACTACGAGAGATGTAGGACTTGC
TGATCAAGCTACTCCAAGCGGAGGATGGGCGGAGCCAGAGCTGCCATTCA
CCAAAAAAATGTCTTCACTTCTGGAATATTATAAACAGTTGGCTCAGCAA
GACAAAGCTGAAAAAGCAAGACAAAAGATCACATCAAGGAGAAGATCAAA
CATGCTTATCATGGATCGTTACGGCTACACGTTGTCTCTTGGTAAAAAGT
CTGGTAGTATTAGTTCACCAAATACCTCAATACTTGGAAAAACGA Run BLAST on NCBI transcript from alignment at sc0000100:514066..516082- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009944 ID=TCONS_00009944|Name=TCONS_00009944|organism=Clytia hemisphaerica|type=transcript|length=2017bp|location=Sequence derived from alignment at sc0000100:514066..516082- (Clytia hemisphaerica)
TGCATGAGGTAGGGAATTCTCTTCAATAGAAAGTCACTTGTCACTCTTAA
CCAATAAGATTTAATTGATTTGAGGGGTAACAACACAATGGTTTGCTTGT
AAATCACCAATAAGTGATTAGTTTTGATTACCGAACATAGATTCAATTAA
ATATTTAGTGAGTTTATACCATGATATAGACAGGAGACCCGTCATGTGTT
TTTTTTATAATTTGATGTACACAAGACGGGTTCGAGCTGTGAGTCCAATA
TTGGACTCACATTTTTTACAGTGGGAAATTCGAATTTAGCGCTGTCCTCA
CTTACTAAAATAAAAACCAAATTTCGAAAGTTGCGCTTTCTCTGAGAAAG
TGTGACCAGTAAAAGAATAACAAAATTTGATTGGCTATGTTTTCAACCGT
TATTAGGATCTGAGAAATTCAAACTCTCAACCCATACCATGCTATACATT
TCGCCATCAGTTTATCAATGAAGAAATCATAGCATGGATTCCCAGGCTAA
CCATGATAGGGCTCTTACGTCCAATGCTGACACCATGCCATGGCAAAGAA
TAACTTGTAGTAAAGAATTTATGATACCTTGTATTGAGCTATCCCTGTTG
TATTGTAATCTTTGATAGCCTGCACTAGTGCCATAATATCTTTTAGCTGG
ACAGTATGTCAGTTGCAATGTACCTTAGTAGGTTTATGAAAATCTTATTT
TTGCTTTCTTTCTTATAGGTTGATTCCTTTTACTGTCCGAACTGTCTTGA
AAACATGCCTTCAACTGAAGCCAAGATCAAGAAAAATCGATGTGCAAACT
GTTTTGATTGTCCCAGTTGTGGACATAGTTTGTCGGTTCGAGCAACGGCT
GTTTCAGTAGGTGGAAATCCACTTGATGAATCACCAAAAACAAATGTCAA
GAAAATGCATTATTTGAATTGTGGTTTTTGTCGTTGGACTACGAGAGATG
TAGGACTTGCTGATCAAGCTACTCGTAAGAATATTATTCTAACTTTTTTT
CTACCCTGAAAACACCAAAAGTTTATATTGTTTTAAACCCTTGGCAAAGT
CATCAATTGCTTTTTGCTATTTAAGTCTCAAAATAATAATAAGTAGTTAT
GATACTTCAGAATTGTATGCAGTTTTTTAAGTTTTGTGGGAGAACCAACC
CCCCTTTGTTTTAAATGTTACGACCATATGATTGAAAATTCCACAACTTA
TTCAATGGCGCTGTACTCATCTTCTACTCTGATGATTTGAAATGAAATAG
ATTTTTTTCTCCCAAAATATAGCAAGCGGAGGATGGGCGGAGCCAGAGCT
GCCATTCACCAAAAAAATGTCTTCACTTCTGGAATATTATAAACAGTTGG
CTCAGCAAGACAAAGCTGAAAAAGCAAGACAAAAGATCACATCAAGGAGA
AGATCAAACATGCTTATCATGGTAGATACTTCAGACTTTCAAACTTATGT
AAAAATTTCTTTTCACTATCAATCTGTCAAAAAAAGTTGTTTTTTACTTC
TTTTTTGACAGGTTAAAAGTGAACTTTTTAGAAATACTTTTTCACAATTC
TTTTTTAAAACCGCAAAAAAAGTTCGTAGTGAGCCAGAGTGAGCTCAAGG
TAAGCTCTTTTGAACTAAAAACTTTTTTACGATTTTTTTGAAAACTTTTA
TTTCAACAGGTAGGTTTAACAGTGAAAAGAAATTTTTACATAAGTTGGTA
CTATAATGTAACCAAATTTTATCTGAAATACACCGAGAAGTATTAGATGC
CCCTCACCGTGGTCCAATACTTATTCAAATGTTTTAATGTTAATAAATAA
TGCTCGTCGAGAGTTTAGAATTTTCAAATTATGTACAACTAAAAAATACA
TTACAGCCAAACTAGGAAACTTCTTTTTTTTGAAACAAAAGCGAAACATA
TTGAAACAAAAACTAATTTATTGTATTTTATATAGGATCGTTACGGCTAC
ACGTTGTCTCTTGGTAAAAAGTCTGGTAGTATTAGTTCACCAAATACCTC
AATACTTGGAAAAACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009944-exon-sc0000100-1575043694:516075..516082 | TCONS_00009944-exon-sc0000100-1575043694:516075..516082 | Clytia hemisphaerica | exon |
| TCONS_00009944-exon-sc0000100-1575043694:515109..515364 | TCONS_00009944-exon-sc0000100-1575043694:515109..515364 | Clytia hemisphaerica | exon |
| TCONS_00009944-exon-sc0000100-1575043694:514662..514810 | TCONS_00009944-exon-sc0000100-1575043694:514662..514810 | Clytia hemisphaerica | exon |
| TCONS_00009944-exon-sc0000100-1575043694:514066..514147 | TCONS_00009944-exon-sc0000100-1575043694:514066..514147 | Clytia hemisphaerica | exon |
| TCONS_00009944-exon-sc0000100-1510915933:516075..516082 | TCONS_00009944-exon-sc0000100-1510915933:516075..516082 | Clytia hemisphaerica | exon |
| TCONS_00009944-exon-sc0000100-1510915933:515109..515364 | TCONS_00009944-exon-sc0000100-1510915933:515109..515364 | Clytia hemisphaerica | exon |
| TCONS_00009944-exon-sc0000100-1510915933:514662..514810 | TCONS_00009944-exon-sc0000100-1510915933:514662..514810 | Clytia hemisphaerica | exon |
| TCONS_00009944-exon-sc0000100-1510915933:514066..514147 | TCONS_00009944-exon-sc0000100-1510915933:514066..514147 | Clytia hemisphaerica | exon |
| TCONS_00009944-exon-sc0000100-1491911889:516075..516082 | TCONS_00009944-exon-sc0000100-1491911889:516075..516082 | Clytia hemisphaerica | exon |
| TCONS_00009944-exon-sc0000100-1491911889:515109..515364 | TCONS_00009944-exon-sc0000100-1491911889:515109..515364 | Clytia hemisphaerica | exon |
| TCONS_00009944-exon-sc0000100-1491911889:514662..514810 | TCONS_00009944-exon-sc0000100-1491911889:514662..514810 | Clytia hemisphaerica | exon |
| TCONS_00009944-exon-sc0000100-1491911889:514066..514147 | TCONS_00009944-exon-sc0000100-1491911889:514066..514147 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000100 | supercontig | sc0000100:514066..516082 - |
Blast
BLAST of TCONS_00009944 vs. Swiss-Prot (Human)
Match: DCTN4 (Dynactin subunit 4 OS=Homo sapiens GN=DCTN4 PE=1 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.953e-57 Identity = 87/143 (60.84%), Postives = 113/143 (79.02%), Query Frame = 3
Query: 3 HEVDSFYCPNCLENMPSTEAKIKKNRCANCFDCPSCGHSLSVRATAVSVGGNPLDESPKTNVKKMHYLNCGFCRWTTRDVGLADQATPSGGWAEPELPFTKKMSSLLEYYKQLAQQDKAEKARQKITSRRRSNMLIM--DRYG 425
HEVDS YCP+CLENMPS EAK+KKNRCANCFDCP C H+LS RAT++S D+ KT +KK +YL CGFCRWT+RDVG+AD++ SGGW EPE P T++M+ L+EYY+QLAQ++K E+ R+K+ +RRR+ M + D+YG
Sbjct: 44 HEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLP--DDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKL-ARRRNYMPLAFSDKYG 183
The following BLAST results are available for this feature:
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