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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009923 ID=TCONS_00009923|Name=TCONS_00009923|organism=Clytia hemisphaerica|type=transcript|length=1218bp
agaTGAAATAAAGTAACTCGTTACTGTGTATAAACAGGGATCAGCAACTA
GTATCAAAAGTCATCAAGTTATAAAAAAGACTCAAcatcaaacaaacaaa
cagacaaAGATCAAGATGATACGTGGTCGCACTATCTCAGCAATAGAACC
AACAAGTCAAATGGTCATACAACAACGCGAGTTAGGCCATGATCTCAAAC
GAAGTGAAGGGAAATCACGTTCAACAAGTAACCTTTTAtgtaaaatgaat
ttcgaaGAGAAAGTGGTACGTTATCGATTTCTACAGGAAAAGGAGTACAA
GCTTCGGACACAACTCCTTCAAGAATATGGTAACAACTCGTGCAAACATG
CTGGCGATGACGTCACTCTCTTTTGTGATTGCGGTCGAATGATTACATCA
CATTCACCCACACATCAACCAATCAACAGCCGACGAAACAATGGCGGGTA
TAATGGTGGATATCTAACGCCGCCCATTGGTCATCAATTAAGATGCAGGA
GTTATAGCGACAAATTTGCTCGAGGACACCGCGCAAGACCGCTTTCGGCT
GACGTACACTTGGAAGCGCCAAAGACGGTTGCACTTCGAAAAATGGCCAG
TAATGAGCGAATGGACCGGCGCCGAGAAAGTTTAAAATCTCTCGACATGG
ATTTTGAAAAAGCTAAAGAACTAATGCAACGAGTCAAAGTATCCTCCAAT
AATTCGATAAATGATAGTAAAGATATCGATTCGATTNTTAATGCAAAGAG
TCAAAGTATCCTCTAATAATTCGATAAATGATAGTAAAGATATCGATTCG
ATTGATGGATTATCGATTAAAGACGGTTTGGAAGAGGATATCGATTCAAT
GAATAACAATTGTGACAATGTTCAAGATTCATATAACGGTTTATCAATGA
AAAACGATTCGAAGCCGATTCAAAATGTTAAAGATGGTAGCTTATCGATT
GATAAGGATGAAAATCCAATGTCGACAAATAAAAATCAAGAGCAAGGCGC
ACACGTAGTTAAACGGAGGCGACCAGAGGGCGGAGTTATGTTTGCAATAA
AAAGGGAACGCCCTCTTTCAAGTTTTTACTGAATTGTTTTCGTTGACAAA
ATGACGAATTCtgagaaagcaaaaaaaaaaaaaaacgaggaAAATTTGGA
ATGGTGAGATATAAATCATTTTTGGGCTTTTTGGTGgatgaactaaaatc
agtctttttatcccaaga Run BLAST on NCBI protein sequence of TCONS_00009923-protein >TCONS_00009923-protein ID=TCONS_00009923-protein|Name=TCONS_00009923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MIRGRTISAIEPTSQMVIQQRELGHDLKRSEGKSRSTSNLLCKMNFEEKV
VRYRFLQEKEYKLRTQLLQEYGNNSCKHAGDDVTLFCDCGRMITSHSPTH
QPINSRRNNGGYNGGYLTPPIGHQLRCRSYSDKFARGHRARPLSADVHLE
APKTVALRKMASNERMDRRRESLKSLDMDFEKAKELMQRVKVSSNNSIND
SKDIDSIXNAKSQSIL Run BLAST on NCBI transcript from alignment at sc0000100:242137..247729- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009923 ID=TCONS_00009923|Name=TCONS_00009923|organism=Clytia hemisphaerica|type=transcript|length=5593bp|location=Sequence derived from alignment at sc0000100:242137..247729- (Clytia hemisphaerica)
AGATGAAATAAAGTAACTCGTTACTGTGTATAAACAGGGATCAGCAACTA
GTATCAAAAGTCATCAAGTTATAAAAAAGACTCAACATCAAACAAACAAA
CAGACAAAGATCAAGATGATACGTGGTCGCACTATCTCAGCAATAGAACC
AACAAGTCAAATGGTCATACAACAACGCGAGTTAGGCCATGATCTCAAAC
GAAGTGAAGGGAAATCACGTTCAACAAGTAACCTTTTATGTAAAATGAAT
TTCGAAGAGAAAGTGGTACGTTATCGATTTCTACAGGAAAAGGTGAGGAA
AGTTGTTTTTCAAGATAGTTAGTCAGAGTTGATATTGTCTTAACGCCCAG
GGGGAAGGGGACTCAAAATTGACGCGTTTTTTTGAAAATCTTTGACCATC
TAGAGGCAAAAAATTATCAGATTTTACAAATTTTACATCCTTTATAATCC
TTTTTTTATCATCCTTTTTTGTTTATATATATATAAAATTCTACTACTTC
CTATTCCTAGAAAACAAGGACAGAGAGCCATTTAAGAAGACTCTCTGTCT
ATCTTGCATTTTTCTTAGAAATCGCCAATCCACAAAACTTTTCCATCGAA
CAGTTCTCATTTTTAATAACATGATCGAGTAAAGTCAAAGCAATTCTACC
ACGTTTGGAATTTTTATCATCATTAAACATTAACAATTTACTCAAACGAC
CAGAAGGCATTCTTACAACAAATACTTTTTCTCATCTCTGCTAATTTCGA
CCCTTATACAATTTACTTAGGGAAACTTAGAAAAAGGGATGATCAAGGGC
CGCACGTATGGTTGGTCGTTTACCTTGAGTGTTCCACCCAGTTTTAACGG
GGTCCACGGTCATCCTTGTAAAAATGTCGGAAAAATACTTTTCAAGTGTC
ACGTAGATCTTCACTTGTTTTTAAGAACCCACACACCTAATTCAAATGTA
TATTAAAATCTGTCAAACATGTAGGCGTCTGATAAAACGTTTCACGTTTC
ATTTATGAAAGGCATTATAAAACCTTCAGAGTTTTTAATAACGATAGATA
ACGGTATTTTGTTTATTTGAATTTGTGAATTTGCGATTCTGTCAAAAATA
TGAATCATTCTACAATTTGTCTTTCTACGTCTCTACGCCGGGGAAAATTT
TTGTCGGGGAAAAATATTCGTCACTTGGCCAAAATTTCGTCACTTTCCCC
CCGGCGAAGTTTTCCCCGATAAGGTACAGTAAAACCTCTAATTAACGGAC
ACTCTAAAAGGCGGACACCTCTGATTAGCGGACAATTTCATTTTCCCCGG
CCGTTTCCTAGTCAAATCCTCATAAAAAAGTTTCTAAAAGGCGGACACTC
AATTAGCGGACCCTCTAATTAGCGGACAAATCTTTTTCGCACGAAATGGC
CAAAACCCCTATTTTTAGCTCTCCATTTAGCGGACATTGAATATCAAACG
GGTCACAGACGTCCAAACTCGAGAAAAAAAAATTTTAGATATCTTTATTT
CGAGCACTTATCAGTCTTATTATTCAAATTATTTCTACAAATTTCCAGTT
TTCCCTTGACCCATTCAACGAATTTAGGTGGGCCAAAGAAATCATAAATC
ACTGATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCTTTCC
CCGATGGTGTCCGCTAATTAGAGGTTCCACTGTATGTTCATTCTTTTTAC
GGTGAAAAAGATAATACCCCCTTCTTACAGACCCGGTTACAGGACCCCCT
CCTACTGCAAAAATTGGCTAAGAAATTGTCCCAAGTGGACAGTTATACTC
TAATTTTTGTTCCCGCTGAAAATAATTAAATAAACAAATCACCACTGGCA
CTGCCAGCGCTATTATTTCCATCTCCACTGAAAACAATGGAATTTAATTC
CCCAGTCATAAAAAACACGGGAATATCGATAGTACCAATCGAGTTTCAGT
CCGTTTTACCCCAACTGGCTGAATAAACCCTACCTAGTGTGTTTTTTGCC
CTAAAATTGGCTACTTAGGTGTTTTTTTTGCCTAATTTCATCATAAATAC
AAAACGTGGTATACTGGAAAGGAAGTTGGATTTCAAAAATCCGAACAAGA
TATCATAGGTTCGGCTAACTACAACCACATGTAAAACCAAGCGGAGATCC
ACGCCACTGGAAAAATTGACCAAAAAATTGTCTATGGTTAAAAAGAACCT
GAAATTTCAGCCCCACTGGGAAATTCTACAATGATATTATCCCATTGGAA
ATCGAACGTAAAAATGTTTTACTCTAAATCATCCCTACTGGCCTTTATAA
GGATTTCAATAGAAATCTCTATCAACACTGTAGGAAATTAGTTCCACTGG
TACATGCTTTTTTTTATAAGAATGGTGTAAATCCGTTTCATCATGGATAT
TCTTAACTTTTTTGGGAAAATCATCCTAAATTATTCTTACAGCATTCTTA
GTTTAGGATCCTAATTGAGACAACTTTAACATTTAGTACTTATGTCTCAA
GCATAAAACGGCATTCTTAGCATGAGTAGCCAAATTCCATGATGGTGATA
TTCTTAGCATTATTCTTATTAAAAAAGCGTGGACTTAGAGACAGGGGCGT
CTACCTGGGAAAGTCTGCCTACCATAAAGGTCTTCAACTTCAAATATTAA
TTTTTCACATTTGTCTTTTTAGGAGTACAAGCTTCGGACACAACTCGTAA
GTATTAAATTTAATACAGATGTATGAAATAACCTGGGGATACACTGGGGA
CGAGGTTTACTGAGTTGTGAACGCCTAGATGCAATAATTCCAGAGAATTG
CTTTTCAGCCCTAATACGAATGTTAGATATTGAATTGGGCTTTTCCAGAA
AAAAAGCCGTATACCCCCTGGAATTCCAGGCAATTTCAGGTTTAAACGCC
TCTGGAATTCTAAATTTTAGTAAGATTCAAAAAGCTACCCCCATGGGATT
CCAGTTATTTTTGGCAGATTGTTGTATCTCCCTATGGAATTTATATCAAA
CATATCAAACCTTACCCCTTTGCAACGGAAATGGACCTCCTCAACAGGGG
GTATATAGTTTTTTTTCTGGAAAAGCAAATTATAGAGAACACAAGCAATA
AAGTCGTATCATCAATTTCGGAAAAACAACCAGTATTTACTTATTGTCTA
CCCTTGATCAAGCCTCCACACACTCTGCTATATGCTGACTGATGGCGCTA
GAAATACTCTTGGCATTGTCTGCTTTTCGAGTGCAAAGATAAGTTCGCTT
CCTAAAGAAACGCATTTAAAATCATTAGTTCTAACCAAGCTGACACCGGT
ACTTAACGTTGTTTCAACGTTTTTATCAAGTTCATAACGTCCATATAACG
TTAGATGAACGTTGAAACAACATGTGCCAGCTTGACTATGTTTTCTTCAG
CTTCAAGAATATGGTAACAACTCGTGCAAACATGCTGGCGATGACGTCAC
TCTCTTTTGTGATTGCGGTCGAATGATTACATCACATTCACCCACACATC
AACCAATCAACAGCCGACGAAACAATGGCGGGTATAATGGTGGATATCTA
ACGCCGCCCATTGGTCATCAATTAAGATGCAGGAGTTATAGCGACAAATT
TGCTCGAGGACACCGCGCAAGACCGGTAAGTAAAAAGATTATATATTTGC
ACTTTTGAGGACGGTAAAGTTACTGTAGCGATTCAGAATAACAGTTTTGA
CCTGAAAAATCCAGGACAGTAAAAGTACTGATTTACCGTTGTCCTCAGTC
AGTCAGGATGTAGACAAATTAGAACTTTACCGTCTCCGTCGCAGAAAAAC
ACACATACATAAACTCGATATTACTGAACCAGGTGTTTGGGTGTGTCCCA
GCTGGGTGTGTCAAGCTTACCTTCATCTTCTATTCTTTTCTGATTATCAA
CAGCGGGATGTTTAGAATACGAACGTTCCGAAATTCAAAGTAAAATATAG
AAAACAACATGGTAGTCGAGCTCAAAATTGGACTAAAAGTCTGTGAGAAG
TTAGCTTATCTGCAATACTGGCTAGAATGATAAATTGAGGTTTCGGTGTA
CATGTTTTTTTATAAGCATACAAAAATCCAAAAGCTGGCTCGGAAATGCT
TAGATCAAGAGATTTACAAAGCTGAAAAATATTTTCAGGGGTGCTTATAT
CCTAAGCAAAATTTTAGAGAAATTTCGAAAATCCGTAAAATTCCAGTCAA
AAACAAACAAATTCTGAAAATGAAGGCTCAAAGAAATGTTTAGCCATATA
TGAGCCTAGATATACCTACTTATACGCGCAATGCTTATACGTATTTCGTC
GATTTTAAATTTTTTTAAGTCTGGGCTATATTCTAACCTTATTGGACCCT
TTTAGAACTTTTACATCCTAAAGCACTTAGAAGAAAAACACTCACACCTT
CTTTATTTTTGTATAGCTTTCGGCTGACGTACACTTGGAAGCGCCAAAGA
CGGTTGCACTTCGAAAAATGGCCAGTAATGAGCGAATGGACCGGCGCCGA
GAAAGTTTAAAATCTCTCGACATGGATTTTGAAAAAGCTAAAGAACTAAT
GCAACGAGTCAAAGTATCCTCCAATAATTCGATAAATGATAGTAAAGATA
TCGATTCGATTNTTAATGCAAAGAGTCAAAGTATCCTCTAATAATTCGAT
AAATGATAGTAAAGATATCGATTCGATTGATGGATTATCGATTAAAGACG
GTTTGGAAGAGGATATCGATTCAATGAATAACAATTGTGACAATGTTCAA
GATTCATATAACGGTTTATCAATGAAAAACGATTCGAAGCCGATTCAAAA
TGTTAAAGATGGTAGCTTATCGATTGATAAGGATGAAAATCCAATGTCGA
CAAATAAAAATCAAGAGCAAGGCGCACACGTAGTTAAACGGAGGCGACCA
GAGGGCGGAGTTATGTTTGCAATAAAAAGGGAACGCCCTCTTTCAAGTTT
TTACTGAATTGTTTTCGTTGACAAAATGACGAATTCTGAGAAAGCAAAAA
AAAAAAAAAACGAGGAAAATTTGGAATGGTGAGATATAAATCATTTTTGG
GCTTTTTGGTGGATGAACTAAAATCAGTCTTTTTATCCCAAGA Coding sequence (CDS) from alignment at sc0000100:242137..247729- >TCONS_00009923 ID=TCONS_00009923|Name=TCONS_00009923|organism=Clytia hemisphaerica|type=CDS|length=2604bp|location=Sequence derived from alignment at sc0000100:242137..247729- (Clytia hemisphaerica)
CTTTCGGCTGACGTACACTTGGAAGCGCCAAAGACGGTTGCACTTCGAAA
AATGGCCAGTAATGAGCGAATGGACCGGCGCCGAGAAAGTTTAAAATCTC
TCGACATGGATTTTGAAAAAGCTAAAGAACTAATGCAACGAGTCAAAGTA
TCCTCCAATAATTCGATAAATGATAGTAAAGATATCGATTCGATTNTTAA
TGCAAAGAGTCAAAGTATCCTCTAACTTCAAGAATATGGTAACAACTCGT
GCAAACATGCTGGCGATGACGTCACTCTCTTTTGTGATTGCGGTCGAATG
ATTACATCACATTCACCCACACATCAACCAATCAACAGCCGACGAAACAA
TGGCGGGTATAATGGTGGATATCTAACGCCGCCCATTGGTCATCAATTAA
GATGCAGGAGTTATAGCGACAAATTTGCTCGAGGACACCGCGCAAGACCG
GAGTACAAGCTTCGGACACAACTCATGATACGTGGTCGCACTATCTCAGC
AATAGAACCAACAAGTCAAATGGTCATACAACAACGCGAGTTAGGCCATG
ATCTCAAACGAAGTGAAGGGAAATCACGTTCAACAAGTAACCTTTTATGT
AAAATGAATTTCGAAGAGAAAGTGGTACGTTATCGATTTCTACAGGAAAA
GCTTTCGGCTGACGTACACTTGGAAGCGCCAAAGACGGTTGCACTTCGAA
AAATGGCCAGTAATGAGCGAATGGACCGGCGCCGAGAAAGTTTAAAATCT
CTCGACATGGATTTTGAAAAAGCTAAAGAACTAATGCAACGAGTCAAAGT
ATCCTCCAATAATTCGATAAATGATAGTAAAGATATCGATTCGATTNTTA
ATGCAAAGAGTCAAAGTATCCTCTAACTTCAAGAATATGGTAACAACTCG
TGCAAACATGCTGGCGATGACGTCACTCTCTTTTGTGATTGCGGTCGAAT
GATTACATCACATTCACCCACACATCAACCAATCAACAGCCGACGAAACA
ATGGCGGGTATAATGGTGGATATCTAACGCCGCCCATTGGTCATCAATTA
AGATGCAGGAGTTATAGCGACAAATTTGCTCGAGGACACCGCGCAAGACC
GGAGTACAAGCTTCGGACACAACTCATGATACGTGGTCGCACTATCTCAG
CAATAGAACCAACAAGTCAAATGGTCATACAACAACGCGAGTTAGGCCAT
GATCTCAAACGAAGTGAAGGGAAATCACGTTCAACAAGTAACCTTTTATG
TAAAATGAATTTCGAAGAGAAAGTGGTACGTTATCGATTTCTACAGGAAA
AGCTTTCGGCTGACGTACACTTGGAAGCGCCAAAGACGGTTGCACTTCGA
AAAATGGCCAGTAATGAGCGAATGGACCGGCGCCGAGAAAGTTTAAAATC
TCTCGACATGGATTTTGAAAAAGCTAAAGAACTAATGCAACGAGTCAAAG
TATCCTCCAATAATTCGATAAATGATAGTAAAGATATCGATTCGATTNTT
AATGCAAAGAGTCAAAGTATCCTCTAACTTCAAGAATATGGTAACAACTC
GTGCAAACATGCTGGCGATGACGTCACTCTCTTTTGTGATTGCGGTCGAA
TGATTACATCACATTCACCCACACATCAACCAATCAACAGCCGACGAAAC
AATGGCGGGTATAATGGTGGATATCTAACGCCGCCCATTGGTCATCAATT
AAGATGCAGGAGTTATAGCGACAAATTTGCTCGAGGACACCGCGCAAGAC
CGGAGTACAAGCTTCGGACACAACTCATGATACGTGGTCGCACTATCTCA
GCAATAGAACCAACAAGTCAAATGGTCATACAACAACGCGAGTTAGGCCA
TGATCTCAAACGAAGTGAAGGGAAATCACGTTCAACAAGTAACCTTTTAT
GTAAAATGAATTTCGAAGAGAAAGTGGTACGTTATCGATTTCTACAGGAA
AAGCTTTCGGCTGACGTACACTTGGAAGCGCCAAAGACGGTTGCACTTCG
AAAAATGGCCAGTAATGAGCGAATGGACCGGCGCCGAGAAAGTTTAAAAT
CTCTCGACATGGATTTTGAAAAAGCTAAAGAACTAATGCAACGAGTCAAA
GTATCCTCCAATAATTCGATAAATGATAGTAAAGATATCGATTCGATTNT
TAATGCAAAGAGTCAAAGTATCCTCTAACTTCAAGAATATGGTAACAACT
CGTGCAAACATGCTGGCGATGACGTCACTCTCTTTTGTGATTGCGGTCGA
ATGATTACATCACATTCACCCACACATCAACCAATCAACAGCCGACGAAA
CAATGGCGGGTATAATGGTGGATATCTAACGCCGCCCATTGGTCATCAAT
TAAGATGCAGGAGTTATAGCGACAAATTTGCTCGAGGACACCGCGCAAGA
CCGGAGTACAAGCTTCGGACACAACTCATGATACGTGGTCGCACTATCTC
AGCAATAGAACCAACAAGTCAAATGGTCATACAACAACGCGAGTTAGGCC
ATGATCTCAAACGAAGTGAAGGGAAATCACGTTCAACAAGTAACCTTTTA
TGTAAAATGAATTTCGAAGAGAAAGTGGTACGTTATCGATTTCTACAGGA
AAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009923-exon-sc0000100-1575043694:247438..247729 | TCONS_00009923-exon-sc0000100-1575043694:247438..247729 | Clytia hemisphaerica | exon |
| TCONS_00009923-exon-sc0000100-1575043694:244534..244557 | TCONS_00009923-exon-sc0000100-1575043694:244534..244557 | Clytia hemisphaerica | exon |
| TCONS_00009923-exon-sc0000100-1575043694:243605..243829 | TCONS_00009923-exon-sc0000100-1575043694:243605..243829 | Clytia hemisphaerica | exon |
| TCONS_00009923-exon-sc0000100-1575043694:242137..242813 | TCONS_00009923-exon-sc0000100-1575043694:242137..242813 | Clytia hemisphaerica | exon |
| TCONS_00009923-exon-sc0000100-1510915933:247438..247729 | TCONS_00009923-exon-sc0000100-1510915933:247438..247729 | Clytia hemisphaerica | exon |
| TCONS_00009923-exon-sc0000100-1510915933:244534..244557 | TCONS_00009923-exon-sc0000100-1510915933:244534..244557 | Clytia hemisphaerica | exon |
| TCONS_00009923-exon-sc0000100-1510915933:243605..243829 | TCONS_00009923-exon-sc0000100-1510915933:243605..243829 | Clytia hemisphaerica | exon |
| TCONS_00009923-exon-sc0000100-1510915933:242137..242813 | TCONS_00009923-exon-sc0000100-1510915933:242137..242813 | Clytia hemisphaerica | exon |
| TCONS_00009923-exon-sc0000100-1491911889:247438..247729 | TCONS_00009923-exon-sc0000100-1491911889:247438..247729 | Clytia hemisphaerica | exon |
| TCONS_00009923-exon-sc0000100-1491911889:244534..244557 | TCONS_00009923-exon-sc0000100-1491911889:244534..244557 | Clytia hemisphaerica | exon |
| TCONS_00009923-exon-sc0000100-1491911889:243605..243829 | TCONS_00009923-exon-sc0000100-1491911889:243605..243829 | Clytia hemisphaerica | exon |
| TCONS_00009923-exon-sc0000100-1491911889:242137..242813 | TCONS_00009923-exon-sc0000100-1491911889:242137..242813 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000100 | supercontig | sc0000100:242137..247729 - |
Blast
The following BLAST results are available for this feature:
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