TCONS_00009922 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009922
Unique NameTCONS_00009922
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009922 ID=TCONS_00009922|Name=TCONS_00009922|organism=Clytia hemisphaerica|type=transcript|length=2381bp
AAATATCTCtggagtaaacaaaaaaatcgaCTGGAGGAAATGTCTAAGAT
TCATTTTCCACATGTGTATCTCATAAGAATTATCTTCGTTTACATTCTTC
AATATTTGATCATAGGTTAAACGAAAGTTGGACCTGGAGCACAAAACAAT
ATTACAGCCTCAACCGCAACAACCACAGCCTCAAATCATATATGCTACAT
TCAAACCACCAACAAAAGTAACTGCAATCAAGCCAAAGCCAGCATCTGGT
CCCAATAGAAGATCTCGTCCTCGATCAATGCCCCTACCTATCGCTCCTGC
AGCACCAACAAACACAGGGATGACCATTCAAAAACCATTAGAGCCAATCA
CCAACAAACCACCTCTCAAGTCTCCCCATGGTGGTGAAAGGCGATACGAA
ACCTCATTGGGAATTCTTACCAAACGTTTTGTTTCCCTTCTAAGAAGTTC
AACAAATGGTATACTAGACTTGAATAATGCAGCTGAAATATTGGATGTTC
AAAAAAGACGAATTTATGACATTACCAATGTCTTAGAGGGAATTGGTGTT
ATtgaaaagaattctaaaaataatatcaaatggGTGGGAGCAAAACATTT
GGAGAAAACAGATGAAACCAATAGTCCACAAGAAGAAGCTGTAATTGGTG
CCAAACTTTTAACTCTCCATCAGGAGATTAGTGATTTAAGATTAGCAGAA
TCACGATTAGATGAACTGATAGAGGACTGTCAAGGTGAAATGAAACACTG
TTCAGCTGCAAAACATGTTAATAAacATTCCTATGTGACGTATCAAGATA
TACGTGGAGTTCAAGATTTTAATGACAAAACGGTTATTGCAATCAAAGCA
CCTCCTGAAACGAAATTAGAAGTACCCGATCCCGCAGAATCCATACAAAT
CTGGCTCAAGAGTAACAATGGACCAATTGATGTATACCTTTGCCCTGACG
GCAATAAAGAGAATGTGCCACCTGGTGTTAAGGTTGAGGATGAGGACCCG
TGCACATCAGATACCGCAAGTTTATGTTCAGAACCACCCTCCCCGCCAGC
CACTTGCTCATCACGCACACTAAGTCAAAGCTCTTCAGGTTGTTTTGACG
ATGATCATTTATCATACAGTGTAGATGCAACCTTATCTTCAATGAACTCT
GAAACTTCACGTGTTAAACTTGAAACTGATGAACTTTTTTCAGGAGATGT
TAGAACTGATATTTCAATTTCTCCTTTGATACCGTTAGAACCAAATTTCA
AAGCTGAagattatttattttcattagaTAGCAGTGAAGGAATTGCAGAT
TTATTCGATGTTGATTCTTTTCTGtgagttgaaaaatattaaaaatatga
atttttaatCGAGTATTTAAAGTATGATCTTTCAACTCGTTAAATATTGG
AAAATCTCATGACATGATATATGAGAATGATGCTAACTCTTTGAAACTCA
ACACTTTGTTAAGTGTGTGGGCAATGAATGAATTGAgtgaacattttttt
gtttttattttgtcccCATGGCTTTCATACAAAGTAATTCTAGATTGTTG
CAAAGCtctcttgttttgaatttaaaacacaaacaaaattgtaatttttt
ttcagatttgacTTTGTGGTTAtctagaatttctttttttttccctgTCC
CTCGCTTGTGTATAGAAATAAATTGTACAATAGTAACTTTTATGTGTATA
TCTATAACCCATTCTATATCACTTAGTGTGTATGTATTATAAAATGCACT
TTTCGTTTCATTATCTTGAATGGAAAGTTTGCACTCCTTAGTATCTTATC
AACAGAGGTAACCTATGTTCCATtttgatagtattttttaacattttcgt
TCTCATTTTATTTAacgaaaaatattatttttaatattttcttttcatat
CAATTTAGAGTGTCACGAGGCGGTGTGTGTACATTTTTCTGTGTGTTTGC
ATGTGTTATATAAATGTGATATTGTGTGTCCTTTAAAAGTAGCACTTTTA
ACGTTAATGTTGGTCTGAACATTTtagtgaattaaaaaaaaacattagaa
tagattttatttttcttcattacaTTAAATTATAGAGAAAgtatattgtt
ttcatttttatttataaatgacgaaaaatcaaaataatttcaaaaaaata
tttatcgtGACGGAGTAGCTTTTGAATCCCTAAAATtggattgattgatt
gattgattgattgattgattgattgattgattgattgcaCATTATTAATT
TTTTGCTATCTTTATCCTGGGAATTGATTGAAttcgttttattttatatt
ttataccaccatttttttcgataaaagtttCCTCCAATAGATTTTTGTTA
AAAGAATCTTTCAAAATAGTGcttaaaattt
Run BLAST on NCBI

protein sequence of TCONS_00009922-protein

>TCONS_00009922-protein ID=TCONS_00009922-protein|Name=TCONS_00009922-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
MPLPIAPAAPTNTGMTIQKPLEPITNKPPLKSPHGGERRYETSLGILTKR
FVSLLRSSTNGILDLNNAAEILDVQKRRIYDITNVLEGIGVIEKNSKNNI
KWVGAKHLEKTDETNSPQEEAVIGAKLLTLHQEISDLRLAESRLDELIED
CQGEMKHCSAAKHVNKHSYVTYQDIRGVQDFNDKTVIAIKAPPETKLEVP
DPAESIQIWLKSNNGPIDVYLCPDGNKENVPPGVKVEDEDPCTSDTASLC
SEPPSPPATCSSRTLSQSSSGCFDDDHLSYSVDATLSSMNSETSRVKLET
DELFSGDVRTDISISPLIPLEPNFKAEDYLFSLDSSEGIADLFDVDSFL
Run BLAST on NCBI

transcript from alignment at sc0000100:206540..210160-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009922 ID=TCONS_00009922|Name=TCONS_00009922|organism=Clytia hemisphaerica|type=transcript|length=3621bp|location=Sequence derived from alignment at sc0000100:206540..210160- (Clytia hemisphaerica)
AAATATCTCTGGAGTAAACAAAAAAATCGACTGGAGGAAATGTCTAAGAT
TCATTTTCCACATGTGTATCTCATAAGAATTATCTTCGTTTACATTCTTC
AATATTTGATCATAGGTTAAACGAAAGTTGGACCTGGAGCACAAAACAAT
ATTACAGCCTCAACCGCAACAACCACAGCCTCAAATCATATATGCTACAT
TCAAACCACCAACAAAAGTAACTGCAATCAAGCCAAAGCCAGCATCTGGT
CCCAATAGAAGATCTCGTCCTCGATCAATGCCCCTACCTATCGCTCCTGC
AGCACCAACAAACACAGGGATGACCATTCAAAAACCATTAGAGCCAATCA
CCAACAAACCACGTAAGATATACCAAATTACTTCGAATAAATGCCCCAGA
TGTATGATCCTCCCTTAAAGGTACTTGTTTTAAATGAACACCCTTCCTAG
AGGATAGGTTGTGCAAAGGGAGTGTTTAAAAGAAGGGATGGCTATTCAAA
GTAATACGGTAAACCAATTCTGAATTTTTTGTGGTTGGCTTTTATTAAAA
TGTTTACATGCCTGATCCTACATTTTGGAATAAGGTCAATAACTTTTAAG
TTTATTGATTAATCAAATTTTCAACTTACATGCCTGTTTGACCTTTCCAA
TAAAGGATTTGAAAGGTTTAGTTGGACAACAGTTACCATCAATTTTCCTG
AACCAATTTGGAATGAAGGACTTTTATTATTGTTTTCTGATATACTTTTC
TTCTTTCTTATTCAGCTCTCAAGTCTCCCCATGGTGGTGAAAGGCGATAC
GAAACCTCATTGGGAATTCTTACCAAACGTTTTGTTTCCCTTCTAAGAAG
TTCAACAAATGGTATACTAGACTTGAATAATGCAGCTGAAATATTGGATG
TTCAAAAAAGACGAATTTATGACATTACCAATGTCTTAGAGGGAATTGGT
GTTATTGAAAAGAATTCTAAAAATAATATCAAATGGGTGTAAGTTGTTTT
ATATTTTGTAAAAACTTAATAGTAAATTCATGATTGTTATACAGTGTCAA
CAGTTCTTTTGTCTTAGATGAAAAGCTTTGCTTTAAACCACTGGTTTTAA
ATACTTCAACAACTTCATTTTCAAATTTTTCAACCTTGACTTCGTGGTAT
TGTGTTTTTGGTCCTTGAATTGCAAATAGTATAGGAAAATGTTTAGATGT
TAAAGTTCTGTGAAATTTTTGTAATTCAACAATTTTAATTTAGGGGAGCA
AAACATTTGGAGAAAACAGATGAAACCAATAGTCCACAAGAAGAAGCTGT
AATTGGTGCCAAACTTTTAACTCTCCATCAGGAGATTAGTGATTTAAGAT
TAGCAGAATCACGATTAGATGAACTGATAGAGGACTGTCAAGGTGAAATG
AAACACTGTTCAGCTGCAAAACATGTTAATAAGTAAGATTTTTGGTTAAA
TTGTTATTTTATACAAGTTACAAGTGATATTTTGGAGCTATTTCTTTGCC
AAATTCTTAGCAAACTTGATTGTTTATTTTGCTGTGTTGATTATAAACTC
GTATACAGAATCAATTGATATCAATTTTAGTTTTACCTAATATTTAATCA
TTTTTATCCATTTTCAATTTTCAATAGACATTCCTATGTGACGTATCAAG
ATATACGTGGAGTTCAAGATTTTAATGACAAAACGGTTATTGCAATCAAA
GCACCTCCTGAAACGAAATTAGAAGTACCCGATCCCGCAGAAGTAAGCTT
TTATAAATATTTTGACTTGGCTCAAATTAGGCTAAACAAACCTGTACAAA
CTTTCAACCGGGGTTGAGAGTTTTTAATGTTTTGAAGTGTGACAAAAAGA
ATTTTGAACCAGACAATGTCTGATGCCCTAAGCGTTATTTCGAGTAGTGA
TTTTAGTATTAGTCAACATTTTTAAATTGATCCACTTTGTACATTATATT
CTTCAAAAGTTTTAAATCATATAGTTATTCCCTAAGAATCAAACTTTCAT
TCATTTTTCAGTCCATACAAATCTGGCTCAAGAGTAACAATGGACCAATT
GATGTATACCTTTGCCCTGACGGCAATAAAGAGAATGTGCCACCTGGTGT
TAAGGTTGAGGATGAGGACCCGTGCACATCAGATACCGCAAGTTTATGTT
CAGAACCACCCTCCCCGCCAGCCACTTGCTCATCACGCACACTAAGTCAA
AGCTCTTCAGGTTGTTTTGACGATGATCATTTATCATACAGTGTAGATGC
AACCTTATCTTCAATGAACTCTGAAACTTCACGTGTTAAACTTGAAACTG
ATGAACTTTTTTCAGGAGATGTTAGAACTGATATTTCAATTTCTCCTTTG
ATACCGTTAGAACCAAATTTCAAAGCTGAAGATTATTTATTTTCATTAGA
TAGCAGTGAAGGAATTGCAGATTTATTCGATGTTGATTCTTTTCTGTGAG
TTGAAAAATATTAAAAATATGAATTTTTAATCGAGTATTTAAAGTATGAT
CTTTCAACTCGTTAAATATTGGAAAATCTCATGACATATGAGAATGATGC
TAACTCTTTGAAACTCAACACTTTCTTATAAGTGCGTGGGTAATGAGTTG
AATGAACAGNAAGTATATCTTTCAACTCGTTAAATATTGGAAAATCTCAT
GACATGATATATGAGAATGATGCTAACTCTTTGAAACTCAACACTTTGTT
AAGTGTGTGGGCAATGAATGAATTGAGTGAACATTTTTTTGTTTTTATTT
TGTCCCCATGGCTTTCATACAAAGTAATTCTAGATTGTTGCAAAGCTCTC
TTGTTTTGAATTTAAAACACAAACAAAATTGTAATTTTTTTTCAGATTTG
ACTTTGTGGTTATCTAGAATTTCTTTTTTTTTCCCTGTCCCTCGCTTGTG
TATAGAAATAAATTGTACAATAGTAACTTTTATGTGTATATCTATAACCC
ATTCTATATCACTTAGTGTGTATGTATTATAAAATGCACTTTTCGTTTCA
TTATCTTGAATGGAAAGTTTGCACTCCTTAGTATCTTATCAACAGAGGTA
ACCTATGTTCCATTTTGATAGTATTTTTTAACATTTTCGTTCTCATTTTA
TTTAACGAAAAATATTATTTTTAATATTTTCTTTTCATATCAATTTAGAG
TGTCACGAGGCGGTGTGTGTACATTTTTCTGTGTGTTTGCATGTGTTATA
TAAATGTGATATTGTGTGTCCTTTAAAAGTAGCACTTTTAACGTTAATGT
TGGTCTGAACATTTTAGTGAATTAAAAAAAAACATTAGAATAGATTTTAT
TTTTCTTCATTACATTAAATTATAGAGAAAGTATATTGTTTTCATTTTTA
TTTATAAATGACGAAAAATCAAAATAATTTCAAAAAAATATTTATCGTGA
CGGAGTAGCTTTTGAATCCCTAAAATTGGATTGATTGATTGATTGATTGA
TTGATTGATTGATTGATTGATTGATTGCACATTATTAATTTTTTGCTATC
TTTATCCTGGGAATTGATTGAATTCGTTTTATTTTATATTTTATACCACC
ATTTTTTTCGATAAAAGTTTCCTCCAATAGATTTTTGTTAAAAGAATCTT
TCAAAATAGTGCTTAAAATTT

Coding sequence (CDS) from alignment at sc0000100:206540..210160-

>TCONS_00009922 ID=TCONS_00009922|Name=TCONS_00009922|organism=Clytia hemisphaerica|type=CDS|length=5250bp|location=Sequence derived from alignment at sc0000100:206540..210160- (Clytia hemisphaerica)
TCCATACAAATCTGGCTCAAGAGTAACAATGGACCAATTGATGTATACCT
TTGCCCTGACGGCAATAAAGAGAATGTGCCACCTGGTGTTAAGGTTGAGG
ATGAGGACCCGTGCACATCAGATACCGCAAGTTTATGTTCAGAACCACCC
TCCCCGCCAGCCACTTGCTCATCACGCACACTAAGTCAAAGCTCTTCAGG
TTGTTTTGACGATGATCATTTATCATACAGTGTAGATGCAACCTTATCTT
CAATGAACTCTGAAACTTCACGTGTTAAACTTGAAACTGATGAACTTTTT
TCAGGAGATGTTAGAACTGATATTTCAATTTCTCCTTTGATACCGTTAGA
ACCAAATTTCAAAGCTGAAGATTATTTATTTTCATTAGATAGCAGTGAAG
GAATTGCAGATTTATTCGATGTTGATTCTTTTCTGTGAACATTCCTATGT
GACGTATCAAGATATACGTGGAGTTCAAGATTTTAATGACAAAACGGTTA
TTGCAATCAAAGCACCTCCTGAAACGAAATTAGAAGTACCCGATCCCGCA
GAAGGGAGCAAAACATTTGGAGAAAACAGATGAAACCAATAGTCCACAAG
AAGAAGCTGTAATTGGTGCCAAACTTTTAACTCTCCATCAGGAGATTAGT
GATTTAAGATTAGCAGAATCACGATTAGATGAACTGATAGAGGACTGTCA
AGGTGAAATGAAACACTGTTCAGCTGCAAAACATGTTAATAACTCTCAAG
TCTCCCCATGGTGGTGAAAGGCGATACGAAACCTCATTGGGAATTCTTAC
CAAACGTTTTGTTTCCCTTCTAAGAAGTTCAACAAATGGTATACTAGACT
TGAATAATGCAGCTGAAATATTGGATGTTCAAAAAAGACGAATTTATGAC
ATTACCAATGTCTTAGAGGGAATTGGTGTTATTGAAAAGAATTCTAAAAA
TAATATCAAATGGGTATGCCCCTACCTATCGCTCCTGCAGCACCAACAAA
CACAGGGATGACCATTCAAAAACCATTAGAGCCAATCACCAACAAACCAC
TCCATACAAATCTGGCTCAAGAGTAACAATGGACCAATTGATGTATACCT
TTGCCCTGACGGCAATAAAGAGAATGTGCCACCTGGTGTTAAGGTTGAGG
ATGAGGACCCGTGCACATCAGATACCGCAAGTTTATGTTCAGAACCACCC
TCCCCGCCAGCCACTTGCTCATCACGCACACTAAGTCAAAGCTCTTCAGG
TTGTTTTGACGATGATCATTTATCATACAGTGTAGATGCAACCTTATCTT
CAATGAACTCTGAAACTTCACGTGTTAAACTTGAAACTGATGAACTTTTT
TCAGGAGATGTTAGAACTGATATTTCAATTTCTCCTTTGATACCGTTAGA
ACCAAATTTCAAAGCTGAAGATTATTTATTTTCATTAGATAGCAGTGAAG
GAATTGCAGATTTATTCGATGTTGATTCTTTTCTGTGAACATTCCTATGT
GACGTATCAAGATATACGTGGAGTTCAAGATTTTAATGACAAAACGGTTA
TTGCAATCAAAGCACCTCCTGAAACGAAATTAGAAGTACCCGATCCCGCA
GAAGGGAGCAAAACATTTGGAGAAAACAGATGAAACCAATAGTCCACAAG
AAGAAGCTGTAATTGGTGCCAAACTTTTAACTCTCCATCAGGAGATTAGT
GATTTAAGATTAGCAGAATCACGATTAGATGAACTGATAGAGGACTGTCA
AGGTGAAATGAAACACTGTTCAGCTGCAAAACATGTTAATAACTCTCAAG
TCTCCCCATGGTGGTGAAAGGCGATACGAAACCTCATTGGGAATTCTTAC
CAAACGTTTTGTTTCCCTTCTAAGAAGTTCAACAAATGGTATACTAGACT
TGAATAATGCAGCTGAAATATTGGATGTTCAAAAAAGACGAATTTATGAC
ATTACCAATGTCTTAGAGGGAATTGGTGTTATTGAAAAGAATTCTAAAAA
TAATATCAAATGGGTATGCCCCTACCTATCGCTCCTGCAGCACCAACAAA
CACAGGGATGACCATTCAAAAACCATTAGAGCCAATCACCAACAAACCAC
TCCATACAAATCTGGCTCAAGAGTAACAATGGACCAATTGATGTATACCT
TTGCCCTGACGGCAATAAAGAGAATGTGCCACCTGGTGTTAAGGTTGAGG
ATGAGGACCCGTGCACATCAGATACCGCAAGTTTATGTTCAGAACCACCC
TCCCCGCCAGCCACTTGCTCATCACGCACACTAAGTCAAAGCTCTTCAGG
TTGTTTTGACGATGATCATTTATCATACAGTGTAGATGCAACCTTATCTT
CAATGAACTCTGAAACTTCACGTGTTAAACTTGAAACTGATGAACTTTTT
TCAGGAGATGTTAGAACTGATATTTCAATTTCTCCTTTGATACCGTTAGA
ACCAAATTTCAAAGCTGAAGATTATTTATTTTCATTAGATAGCAGTGAAG
GAATTGCAGATTTATTCGATGTTGATTCTTTTCTGTGAACATTCCTATGT
GACGTATCAAGATATACGTGGAGTTCAAGATTTTAATGACAAAACGGTTA
TTGCAATCAAAGCACCTCCTGAAACGAAATTAGAAGTACCCGATCCCGCA
GAAGGGAGCAAAACATTTGGAGAAAACAGATGAAACCAATAGTCCACAAG
AAGAAGCTGTAATTGGTGCCAAACTTTTAACTCTCCATCAGGAGATTAGT
GATTTAAGATTAGCAGAATCACGATTAGATGAACTGATAGAGGACTGTCA
AGGTGAAATGAAACACTGTTCAGCTGCAAAACATGTTAATAACTCTCAAG
TCTCCCCATGGTGGTGAAAGGCGATACGAAACCTCATTGGGAATTCTTAC
CAAACGTTTTGTTTCCCTTCTAAGAAGTTCAACAAATGGTATACTAGACT
TGAATAATGCAGCTGAAATATTGGATGTTCAAAAAAGACGAATTTATGAC
ATTACCAATGTCTTAGAGGGAATTGGTGTTATTGAAAAGAATTCTAAAAA
TAATATCAAATGGGTATGCCCCTACCTATCGCTCCTGCAGCACCAACAAA
CACAGGGATGACCATTCAAAAACCATTAGAGCCAATCACCAACAAACCAC
TCCATACAAATCTGGCTCAAGAGTAACAATGGACCAATTGATGTATACCT
TTGCCCTGACGGCAATAAAGAGAATGTGCCACCTGGTGTTAAGGTTGAGG
ATGAGGACCCGTGCACATCAGATACCGCAAGTTTATGTTCAGAACCACCC
TCCCCGCCAGCCACTTGCTCATCACGCACACTAAGTCAAAGCTCTTCAGG
TTGTTTTGACGATGATCATTTATCATACAGTGTAGATGCAACCTTATCTT
CAATGAACTCTGAAACTTCACGTGTTAAACTTGAAACTGATGAACTTTTT
TCAGGAGATGTTAGAACTGATATTTCAATTTCTCCTTTGATACCGTTAGA
ACCAAATTTCAAAGCTGAAGATTATTTATTTTCATTAGATAGCAGTGAAG
GAATTGCAGATTTATTCGATGTTGATTCTTTTCTGTGAACATTCCTATGT
GACGTATCAAGATATACGTGGAGTTCAAGATTTTAATGACAAAACGGTTA
TTGCAATCAAAGCACCTCCTGAAACGAAATTAGAAGTACCCGATCCCGCA
GAAGGGAGCAAAACATTTGGAGAAAACAGATGAAACCAATAGTCCACAAG
AAGAAGCTGTAATTGGTGCCAAACTTTTAACTCTCCATCAGGAGATTAGT
GATTTAAGATTAGCAGAATCACGATTAGATGAACTGATAGAGGACTGTCA
AGGTGAAATGAAACACTGTTCAGCTGCAAAACATGTTAATAACTCTCAAG
TCTCCCCATGGTGGTGAAAGGCGATACGAAACCTCATTGGGAATTCTTAC
CAAACGTTTTGTTTCCCTTCTAAGAAGTTCAACAAATGGTATACTAGACT
TGAATAATGCAGCTGAAATATTGGATGTTCAAAAAAGACGAATTTATGAC
ATTACCAATGTCTTAGAGGGAATTGGTGTTATTGAAAAGAATTCTAAAAA
TAATATCAAATGGGTATGCCCCTACCTATCGCTCCTGCAGCACCAACAAA
CACAGGGATGACCATTCAAAAACCATTAGAGCCAATCACCAACAAACCAC
TCCATACAAATCTGGCTCAAGAGTAACAATGGACCAATTGATGTATACCT
TTGCCCTGACGGCAATAAAGAGAATGTGCCACCTGGTGTTAAGGTTGAGG
ATGAGGACCCGTGCACATCAGATACCGCAAGTTTATGTTCAGAACCACCC
TCCCCGCCAGCCACTTGCTCATCACGCACACTAAGTCAAAGCTCTTCAGG
TTGTTTTGACGATGATCATTTATCATACAGTGTAGATGCAACCTTATCTT
CAATGAACTCTGAAACTTCACGTGTTAAACTTGAAACTGATGAACTTTTT
TCAGGAGATGTTAGAACTGATATTTCAATTTCTCCTTTGATACCGTTAGA
ACCAAATTTCAAAGCTGAAGATTATTTATTTTCATTAGATAGCAGTGAAG
GAATTGCAGATTTATTCGATGTTGATTCTTTTCTGTGAACATTCCTATGT
GACGTATCAAGATATACGTGGAGTTCAAGATTTTAATGACAAAACGGTTA
TTGCAATCAAAGCACCTCCTGAAACGAAATTAGAAGTACCCGATCCCGCA
GAAGGGAGCAAAACATTTGGAGAAAACAGATGAAACCAATAGTCCACAAG
AAGAAGCTGTAATTGGTGCCAAACTTTTAACTCTCCATCAGGAGATTAGT
GATTTAAGATTAGCAGAATCACGATTAGATGAACTGATAGAGGACTGTCA
AGGTGAAATGAAACACTGTTCAGCTGCAAAACATGTTAATAACTCTCAAG
TCTCCCCATGGTGGTGAAAGGCGATACGAAACCTCATTGGGAATTCTTAC
CAAACGTTTTGTTTCCCTTCTAAGAAGTTCAACAAATGGTATACTAGACT
TGAATAATGCAGCTGAAATATTGGATGTTCAAAAAAGACGAATTTATGAC
ATTACCAATGTCTTAGAGGGAATTGGTGTTATTGAAAAGAATTCTAAAAA
TAATATCAAATGGGTATGCCCCTACCTATCGCTCCTGCAGCACCAACAAA
CACAGGGATGACCATTCAAAAACCATTAGAGCCAATCACCAACAAACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005565XLOC_005565Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009922-exon-sc0000100-1575043694:209799..210160TCONS_00009922-exon-sc0000100-1575043694:209799..210160Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1575043694:209173..209395TCONS_00009922-exon-sc0000100-1575043694:209173..209395Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1575043694:208729..208917TCONS_00009922-exon-sc0000100-1575043694:208729..208917Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1575043694:208419..208533TCONS_00009922-exon-sc0000100-1575043694:208419..208533Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1575043694:207626..208149TCONS_00009922-exon-sc0000100-1575043694:207626..208149Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1575043694:206540..207507TCONS_00009922-exon-sc0000100-1575043694:206540..207507Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1510915933:209799..210160TCONS_00009922-exon-sc0000100-1510915933:209799..210160Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1510915933:209173..209395TCONS_00009922-exon-sc0000100-1510915933:209173..209395Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1510915933:208729..208917TCONS_00009922-exon-sc0000100-1510915933:208729..208917Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1510915933:208419..208533TCONS_00009922-exon-sc0000100-1510915933:208419..208533Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1510915933:207626..208149TCONS_00009922-exon-sc0000100-1510915933:207626..208149Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1510915933:206540..207507TCONS_00009922-exon-sc0000100-1510915933:206540..207507Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1491911889:209799..210160TCONS_00009922-exon-sc0000100-1491911889:209799..210160Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1491911889:209173..209395TCONS_00009922-exon-sc0000100-1491911889:209173..209395Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1491911889:208729..208917TCONS_00009922-exon-sc0000100-1491911889:208729..208917Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1491911889:208419..208533TCONS_00009922-exon-sc0000100-1491911889:208419..208533Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1491911889:207626..208149TCONS_00009922-exon-sc0000100-1491911889:207626..208149Clytia hemisphaericaexon
TCONS_00009922-exon-sc0000100-1491911889:206540..207507TCONS_00009922-exon-sc0000100-1491911889:206540..207507Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009922-proteinTCONS_00009922-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:206540..210160 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.8292	11.5006	11.3355	13.3611	26.8729	20.8823	10.1712	12.5993	8.06713	9.38737	5.00718	4.8231	3.41853	2.99356	3.80918	5.69279	8.32371	7.7345	1.35218	1.27746	7.93959	8.67098	17.3876	15.2493	10.2855	10.4747	2.69044	1.65283	9.61524	9.08773
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003316E2F_WHTH_DNA-bd_dom
IPR032198E2F_CC-MB
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005667transcription factor complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
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BLAST of TCONS_00009922 vs. Swiss-Prot (Human)
Match: E2F2 (Transcription factor E2F2 OS=Homo sapiens GN=E2F2 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 2.170e-65
Identity = 149/352 (42.33%), Postives = 200/352 (56.82%), Query Frame = 2 
Query:  287 PIAPAAPTNTGMTIQKPLEPITNKPPLKSPHGGERRYETSLGILTKRFVSLLRSSTNGILDLNNAAEILDVQKRRIYDITNVLEGIGVIEKNSKNNIKWVGAKHLEKTDETNSPQEEAVIGAKLLTLHQEISDLRLAESRLDELIEDCQGEMKHCSAAKHVNKHSYVTYQDIRGVQDFNDKTVIAIKAPPETKLEVPDPAE-SIQIWLKSNNGPIDVYLCPDGNKENVPPGVKVEDEDPCTSDTASLCSEP----PSPPATCXXXXXXXXXXGCFDDDHLSYSVDATLSSMNSETSRVKL------ETDELFSGDVRTDISISPLIPLEPNFKAEDYLFSLDSSEGIADLFD 1309
            P+ P  PT  G  I+    P    P  KSP G + RY+TSLG+LTK+F+ LL  S +G+LDLN AAE+LDVQKRRIYDITNVLEGI +I K +KNNI+WVG    E        Q+          L QE+ +L   E  LD+LI+ C    KH +  K   + +YVTYQDIR V +F ++TVIA+KAPP+T+LEVPD  E ++QI+LKS  GPI+VYLCP+  +E   P      E+P  S T++LC  P    PS     S    + SS               +L  + +  S ++L      +T++ F     T    SPLI   P+   +DYL+ L++ EGI+DLFD
Sbjct:   97 PVVPEFPTPKGKCIRVDGLPSPKTP--KSP-GEKTRYDTSLGLLTKKFIYLLSESEDGVLDLNWAAEVLDVQKRRIYDITNVLEGIQLIRKKAKNNIQWVGRGMFEDPTRPGKQQQ----------LGQELKELMNTEQALDQLIQSCSLSFKHLTEDKANKRLAYVTYQDIRAVGNFKEQTVIAVKAPPQTRLEVPDRTEDNLQIYLKSTQGPIEVYLCPEEVQEPDSPS-----EEPLPS-TSTLCPSPDSAQPSSSTDPSIMEPTASSVPAPAPTPQQAPPPPSLVPLEATDSLLELPHPLLQQTEDQFLSP--TLACSSPLISFSPSLDQDDYLWGLEAGEGISDLFD 427
The following BLAST results are available for this feature:
BLAST of TCONS_00009922 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
E2F22.170e-6542.33Transcription factor E2F2 OS=Homo sapiens GN=E2F2 ... [more]
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