TCONS_00009919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009919
Unique NameTCONS_00009919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009919 ID=TCONS_00009919|Name=TCONS_00009919|organism=Clytia hemisphaerica|type=transcript|length=631bp
CGGATATTAAAGTTGGCGCTAGATCTTAATTTTGGGGATCTAGCCTAAAA
CTGCTAACCCCACATGATTTGATTCCCGATGAAATTAACACACTAAAGCA
AAGGAAGGTTCCTTCATAATTTGTTGaataatgaaataataaaaatcgTT
ATTACACCCCCTCCTTATAGACCCACGGGGGTCcgtccccactggaaaaa
ttgttcaGAATATAGCCCCCGATAGAATATTAACCTGCAATTTTTATCCC
TACtgaaaatattcgaataaaccaatccttcctgcaaaatattatgctat
tttttccatcgccaataatttttttgtcttggaaacaaaagaattgagaa
cctcagccataaaaaacatggaaaTATAAATCACCGTCGAGTTTAAGTCC
GTTACTTTTATCcacactggctgaaaaaatcctaccgtgtctgtgagaag
ggggcgtGTTCTTAACTAGCTCAGCATGCAACGGTTACTTGCGACTTTAT
TTTTACATCTtgacaaaatatattttgtttttaatgtttccTCGTGGTTT
TTACCCAATGTATGGATTCTCCTATTCATAACATCTGTATATAACTCGAT
CGCTTTGATGTAATCTTTCTGCATCCTGTAG
Run BLAST on NCBI

transcript from alignment at sc0000100:65367..71223-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009919 ID=TCONS_00009919|Name=TCONS_00009919|organism=Clytia hemisphaerica|type=transcript|length=5857bp|location=Sequence derived from alignment at sc0000100:65367..71223- (Clytia hemisphaerica)
CGGATATTAAAGTTGGCGCTAGATCTTAATTTTGGGGATCTAGCCTAAAA
CTGCTAACCCCACATGATTTGATTCCCGATGAAATTAACACACTAAAGCA
AAGGAAGGTTCCTTCATAATTTGTTGAATAATGAAATAATAAAAATCGTT
ATTACACCCCCTCCTTATAGACCCACGGGGGTCCGTCCCCACTGGAAAAA
TTGTTCAGAATATAGCCCCCGATAGAATATTAACCTGCAATTTTTATCCC
TACTGAAAATATTCGAATAAACCAATCCTTCCTGCAAAATATTATGCTAT
TTTTTCCATCGCCAATAATTTTTTTGTCTTGGAAACAAAAGAATTGAGAA
CCTCAGCCATAAAAAACATGGAAATATAAATCACCGTCGAGTTTAAGTCC
GTTACTTTTATCCACACTGGCTGAAAAAATCCTACCGTGTCTGTGAGAAG
GGGGCGTGTTCTTAACTAGCTCAGCATGCAACGGTTACTTGCGACTTTAT
TTTTACATCTTGACAAAATATATTTTGTTTTTAATGTTTCCTCGTGGTTT
TTACCCAATGTATGGATTCTCCTATTCATAACATCTGTATATATAACTCG
ATCGCTCCCAGCCGGCACACAACGTTTTCAAAACGTTTTTTTTAGGTTTA
AATTACGTTGTGAAAAAACGCGTTGCCAAAAAACGTTTTAAAAACCTTTT
TTCAACGTTGTAGAGAAAACGCGTTATTTCATAACGTTTATAAAACGTTG
TTGAAACGTTATAATCCATACGTTTTTCAAAGGTTTTGCTAACAACGTTT
AATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATACATAGAGGTAATAAAAGTTAGATGGAGTAACAACTTTTCTG
TAATAGCCAGAGAAGTCATAAAACTCTTTAGAAATTTCTTTCAAATCGGC
CCTCTTTGATTACCAATCCTTGATAGCAAAAATCAGTCAAGATATAGATT
ATAAGAACTAAAGTAGTCCATCGAAACCTCGTATTTTTAGGTAAAATGCG
AATTTTTTTCGAGTAATAATTTCTTTATAGTTTTAAAAGAAGTTTTTATT
TTATCGGGAAACTTTCGAGAGGTAAACTTCTTCAAATTTTGCGAATTCTT
TGTTGTTTGTGGAAGGTTCTTTGCTATTAATATCTTTAGATCTAAAATAG
CAGCTGTCTCAAAATTTTGATAGAATATAGTTGAAAGACTGGCATTAGTA
AATATGTAAAAATTGACAAAATTTGCCGAGGATTCCCTGAGCAGCGAACA
TTTCAAATTCAATGTTCTGTGCTTATTCTTGCAAGGTTTTCTTATGTTTT
ATCAACAAAACTGTCATCACACAATGAACAAATTAAAAATGTAGCGTGAT
TATATTCAAATTCTCTTCGACTCAAGTATTCCCATGAGCGAAAGCAAAAT
TAATGGCTTTTTCCCAAAGTAACAAAGCAACAGTTTGCTATCAACGATAC
AATACAATAGAATAGTAGGAGTGGTATCTCCATCTATATTTTTATTACCT
CCATGATAAATATAACCTCATCGACTCTCAGCTTTTATCCCAAGAAAATT
TCTGAGACTTTACCTACCTGCTCTGAGATATATAGGATAGATATTCTATA
TATCTTTTTCTCTTTTACTTTATTGACTTCTCTTAAAGTGTTAAATATAT
TTTAATAAAACGCCCACTCCCTGTTTGAATACCTCGTAAGATTGCCCACC
CGTAGAATAGAACCTTTTGAAATTCTCTCCGTCACGCCCTTTCCAAATTA
CAAACCACGTACCCGCTCCCCGTCCCACTTGCCGCCCCCATCGTCGGCCG
AATTAACAATGGAATGGCTTCTTTTCTGGACAGCTTTCGAACGTTCGAAC
GTTCAAACGTTCGAATTCGAAATCACTTGTAGTTCAAAACAAAAATCNGG
AATGGCTTCTTTTCTGGACAGCTTTCGAACGTTCGAACGTTCAAACGTTC
GAATTCGAAATCACTTGTAGTTCAAAACAAAACAAAGATGTGGCTAGTTC
GAAACACGGGTCACGGGTCCGGGTCACGGATCCGGGGCACGGGGCACGGG
GCACGGGGTGACTGGGCAGCTGAGATCAAAGTAATTCAAACAGAAAATGT
TTTAAAAACACTAAAAATTATCGAAAAAATCAATTTTAAGGTATTTTATC
CACCTATGACTATTTAAAACGCTAAAACCTAACCACGTGCTTTCCACGTG
CTTTCGAAGTTTGCGTCGTGTATAATGCAGACCAGAAAACACCGTAACAT
ATTACATACATATAATAAGCTTATATTATCAATACAAATACACTTTAAGT
GTTATATGCATGTTATATGTTATACGTAAGTAATATACATATTACAATTC
CCATCGCCTGAAAAAGCGAGCTTTCTCAAGAAAATGATAGTACGGCTATT
GTTAAATCATATCTCATTATATCCCCTCCATCACCTTGAGTATGAATATA
ATTTTAATGGATAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCCACGGGCTTTTTTTTTGGACCCACGGGGGCACGAACCCACGAGGGCAC
GGGACCCACGGGACCCACGAGGGCACGGGACCCACGTAAATAATCACACT
CCATTTAATCGTTTTAAAACATGCCAATCTATATCCAGTCACATGATTAA
CATCCTATTGAGTATGAAAAAACATTTTGCTGTAAATTGGTTCAGAGGCG
TTATATTTAATGATTTTGACAATATTTTTGTCATTCAATATCATTTTGTC
AAAATTTGTGGGTGACAATATTATTTAAAAATTTTCATGATAATACTATT
CGTATATATATAATTGTTTCAGACATACTATACTAGTAGTATTAGTACTA
TTATATGTGNGGAAAGTCTTTTTCTCGAGTTCAAGGTAGGACAAAACAGT
CGAATATCAACTCTTTCAATACCGCCAGAAAGAAAAAGTTTCCGGATTCT
AACAATTGACATATGAGAAAGTTTGTTGCAGGGCGATTTCTCACTGTTGA
AAAGACTTGCTTCATTTTTGCTTTAACCGAAAGTAAACTTCATTAACTTT
GAAGAGACCCCTAATCAGACCCAAATCAGGCGATCACGCTAAATTTCAAG
TTCAATCACTCATCACGAAAAATGACCAAATTGAAGTTTATCACGCAATT
ATCGGCAATACATACAGAGCAAAATTTCGTTTAATCACGCATCACGCTCC
AAAATTTTGTCAAATCGTGATCACATTCTAACTTCCAATCACACAATCAA
GCCAAAAAAATTCGGAATCGCGATGGCAGACAATATCGAGGGGGGGTTTG
TAGGGGTTCGAAATACCGTTACTGTCTGATTTTAAAATACCGTTTTCCTG
TCTCTTTTTTCGTCAAATCCCCTACNGACCCGTAACCCGTGACCCGTGTT
TCGAACTAGCCGCAAATAAAGCATAATACTTATACAGTACCAAAAGTTCA
TAGGCTATAGGCCAAAGACTGAGGCCGAGATAATTGAAAATTCCCCAAAC
TATGAGTGATTATAAACGTTTCATGTTTAGAAGAGGCTTTTTCTTGAAAT
CCAATAAAAGTTCCAAAATAAATCCAATCTCCTTTTCCAATTTTTTTGCT
GGTAAAAAGAAGGGGAACTCTCACTGTTTTCTTACCAAACATCTACGAAT
GCCGTCTAAAAACGAGAGTAATTTTTGTCCCTACAAGCTGCGCACGGCAG
CGCAGCGAACGGCTCCAGAATTTGGCTAATAGCAATCATACTGGAAACGT
TTGGAATGATCATCACGAAGATGCCAGAAAGGAAGCGTGGAAGAGAAAGA
ACATCAAATTTTTGATTTCATTACGTTCAATTTATACTGATTGTCATACC
CAGAAAATTATATAGAAAATAGCATTCAAAGAAAATTCAAATGTGTCTAT
GGTCTTTCTCATAATAGTGCAATGAATAGGAATTATTTTGGCAAAGGACG
TCTTAGAGACGTGTTAAAACTAATCTATAATAACTTTTAAAGACGTTTTT
AAGTCGTCTCAGAAACGTACCATACAGAAATTAATAAAATTAAGACGTCT
CGGAAACGTCCTACTAGAGACGTCCATAATTCGTTCCAAAAAGACGTATT
TCAAGTGGCTAGAAGAAAACGTAGAAACAACGTTTTTTAAACGTCTTGCA
AAAACGTTTGAAAAACATTTTTTTGACATTGTGAAAAAACGTTGTAAAGT
GCGACAAATACAACCTGAAAAAAACGTTTTCAAACGTTTTTTTTTTTTAA
CGTTTTTTAAACGTCTTTTGCCGGCTGCTCGATCGCTTTGATGTAATCTT
TGTAGCAATGGGCAAGCCGATATTTTGTGTCTAATGTTTTATCGTGGTTA
TCGCCCAATGTATGGATTCTCCTATTCATAACATCTGTAAATAACTCGAT
CGCTTTGATGTAATCGTTCTGCTTCCTGTAGCACTCGGCAAGCATATATT
TTGTGTGTAATGTTTTATCGTGGTTATCGCCCAACGTATGGATTCTCCTG
TTCATAACATCTGTATATAACTCGATCGCTTTGATGTAATCTTTCTGCAT
CCTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005563XLOC_005563Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009919-exon-sc0000100-1575043694:70642..71223TCONS_00009919-exon-sc0000100-1575043694:70642..71223Clytia hemisphaericaexon
TCONS_00009919-exon-sc0000100-1575043694:65367..65415TCONS_00009919-exon-sc0000100-1575043694:65367..65415Clytia hemisphaericaexon
TCONS_00009919-exon-sc0000100-1510915933:70642..71223TCONS_00009919-exon-sc0000100-1510915933:70642..71223Clytia hemisphaericaexon
TCONS_00009919-exon-sc0000100-1510915933:65367..65415TCONS_00009919-exon-sc0000100-1510915933:65367..65415Clytia hemisphaericaexon
TCONS_00009919-exon-sc0000100-1491911889:70642..71223TCONS_00009919-exon-sc0000100-1491911889:70642..71223Clytia hemisphaericaexon
TCONS_00009919-exon-sc0000100-1491911889:65367..65415TCONS_00009919-exon-sc0000100-1491911889:65367..65415Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:65367..71223 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0840705	0.081982	0.0951889	0.0931275	5.32857	3.85235	1.5132	3.08896	1.00464	0.70202	1.13654	0.424057	1.71128	1.82391	0.770122	1.90783	0.252446	0.532375	2.53134	2.26549	1.57842	1.36239	0.341942	0.660916	0.451314	1.04725	0.230555	0.492108	0.604594	0.100524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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