TCONS_00009912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009912
Unique NameTCONS_00009912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009912 ID=TCONS_00009912|Name=TCONS_00009912|organism=Clytia hemisphaerica|type=transcript|length=1806bp
atgatgcccaaaacttagcatcgtttgatttccaaaaaaatcatcctttg
aatccggaactccttaaaaatcgccggaacagccgaaaaccggcgtaaaa
cgtttttccttcattttttcaacttatactcgacagattttcatgatttt
ttgcacaatgatgtaaaatgacaatgctcaaaatgtgacagagcccaatt
atcgaaaaagaaatttttccggccgctagaaccggaaatgtcccgaaaaa
agcggttttttgagattttctcgagattttctcattagttttttgcgatt
ttttgcacatagatgcacattagtactgccgaaaaggtgtttcttaattg
ctttctccgttccaatagatatataaatcgaaatttaaaattatacatta
cttccattaaattctaattattcgttttataaataggtaggtcttGTTTG
TGTAGATTTTTCAATTTGACTACAAATAAAAGAAACGTTGACATCATGGT
AGATGTGATCTATCCTGACAATACACCAATTTCATCACTGACAAATAGAC
CATATAAAGGCCAAATTCCAAAGACATGGCCCAACTTTGTTTGTTCAGAA
TGTAATATGGCACTGCACACTCCTATAGTTGCAATCCAACATTTCAATGG
CAGATGTATCAAGTCAAACAAGAAACATGTGAAGCGTGATTTATCAAAGA
CTTCAACACCCACTCAGCAATTCAATATAGAGCAAAACAAAACACACCAG
ACCACAGTCAAGTCCAAAAACATAGATGACAGTAATCTGGATTGCAAAGT
TTGTAATGCAGCCTTAAATGGGCCATCGTCTGCCAAAGAGCACTATGCAG
GAAAGAAGCATGCAATGGCAGTTCAAGCTATTCTCGATGAAGGAGGTCAT
GTGCCCGATGTGCCGCCAGAAGTCAAGTCAATACCTTATGATAAAAGTAA
ATTTCATTGTGATGTATGTAATATCAACCTAACATCTCAAGCGCAGTATG
AACAACATATTGGAGGCACGAAACATAAGATGATTGCCGATGGTTCTCAT
CCGTCAGATTTTTCCAATTATAAAGGTAAGCAAACACCTTCTAAAATGGA
CCCGCCTCCTTTAAAACCACCACCTAGTTCCCTCCACTGTAATGATTGCA
ACATGACAATGAACTCTGAAGACCAATATGTCCAACACATGAACAGTAAA
AGGCACAGAGAAAATACGTCAGGTGGAAATTACAACCCCAATCAAAACAG
AGGTATCAAACGACCAGCACCAGGTAGTGATCGTGGTTCTGGGCATGGTG
GTGGAGGCAGAGGTGTACCTCGAGGTTTGAGCAGAGGAGCAACTGGCAGT
TTCAGTAGAGGGCGTGGTGCCACCAGAGGGGGATTCCAAGGTTCAGACAG
AGGAGTTCCGCATGGTAGAGGAAGAGGCCAATCTCATAATGCGGGTAGGG
GAGCAGGTAGAGGCAGAGGGCGTGGCAGCAGTCGGGGAAGTCCTTCAATC
AGTCGAGGTGGTGGTGGCGGTCAAAGTGCCGAATGGTGGAGGGATGATGG
TCCTACTCCTGCCAAGATGCAGAAAGAAAATGATACCAATTTTTCAGAAA
TCAGCAACCCTAAGCCTTGGATTAGAGGAGGATTCAATAACATGAGGGGT
GGAAGGAGAGGCGGACCACCCTCAAGGGGTGGTGGTGTTATAAATCGTTT
GCAAAGTATGGCGAGTTAAGATCGATCTTTGATTTTATTGTGAATTTCct
ctaaatttttatttttgtttcttttttcacttttttaacctttttttaaa
agaaag
Run BLAST on NCBI

transcript from alignment at sc0000100:342979..348048+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009912 ID=TCONS_00009912|Name=TCONS_00009912|organism=Clytia hemisphaerica|type=transcript|length=5070bp|location=Sequence derived from alignment at sc0000100:342979..348048+ (Clytia hemisphaerica)
atgatgcccaaaacttagcatcgtttgatttccaaaaaaatcatcctttg
aatccggaactccttaaaaatcgccggaacagccgaaaaccggcgtaaaa
cgtttttccttcattttttcaacttatactcgacagattttcatgatttt
ttgcacaatgatgtaaaatgacaatgctcaaaatgtgacagagcccaatt
atcgaaaaagaaatttttccggccgctagaaccggaaatgtcccgaaaaa
agcggttttttgagattttctcgagattttctcattagttttttgcgatt
ttttgcacatagatgcacattagtactgccgaaaaggtgtttcttaattg
ctttctccgttccaatagatatataaatcgaaatttaaaattatacatta
cttccattaaattctaattattcgttttataaataggtaggtcttGTTTG
TGTAGATTTTTCAATTTGACTACAAATAAAAGAAACGTTGACATCATGGT
AGATGTGATCTATCCTGACAATACACCAATTTCATCACTGACAAATAGAC
CATATAAAGGCCAAATTCCAAAGACATGGCCCAACTTTGTTTGTTCAGAA
TGTAATATGGCACTGCACACTCCTATAGTTGCAATCCAACATTTCAATGG
CAGATGTATCAAGGTATGCTTTTTTAGtttcttatttttacaaaaatggg
cttttccagaataaaatttgaatattgggggtggaggatataacattttt
ttggaaatcacaCCAGTATTATTTAATTTGAAGATTCtaattttttcttc
ataaacAGTCAAACAAGAAACATGTGAAGCGTGATTTATCAAAGACTTCA
ACACCCACTCAGCAATTCAATATAGAGCAAAACAAAACACACCAGACCAC
AGTCAAGTCCAAAAACATAGATGACAGTAATCTGGATTGCAAAGTTTGTA
ATGCAGCCTTAAATGGGCCATCGTCTGCCAAAGAGCACTATGCAGGAAAG
AAGCATGCAATGGCAGTTCAAGCTATTCTCGATGAAGGAGGTCATGTGCC
CGATGTGCCGCCAGAAGTCAAGTCAATACCTTATGATAAAAGTAAATTTC
ATTGTGATGTATGTAATATCAACCTAACATCTCAAGCGCAGTATGAACAA
CATATTGGAGGCACGAAACATAAGATGATTGCCGATGGTTCTCATCCGTC
AGATTTTTCCAATTATAAAGGTATTTCTCTTGAACATTTTGACCTCTTTT
TTAAATAacctcaaaactttacaaaaaattCCTTTCAGACATAAAGATTT
TCAGGAGTGCTCTGAATTAAGTCGAAATTAGCCAGACAAAACTTGAAGTT
GATAGCACAACTAGAGCAGtctacgtcaaaatttgaaacttatggaaact
ttttttgaacCACCCGATAATACTTCTTTATAGTGTACACCATTCCTTTG
CCTCAGCAAGGTATAAAAAATAGGCTCTCTGTCTCCAAATTTAACACAAA
ATctgtaaagtttaaaaaagtctTGTCTAATTTGTTGTGTTTTCAAAGTC
TATCGATCTGATTTTtgcactaaaatagttttaaattaatttaattATCA
AAGGTAAGCAAACACCTTCTAAAATGGACCCGCCTCCTTTAAAACCACCA
CCTAGTTCCCTCCACTGTAATGATTGCAACATGACAATGAATTCTGAAGA
TCAATACGTCCAACACATGAACAGTAAAAGACACAGAGAAAATACAGGTA
CCGTATGACTTTGAATACAGTATCATTTAGTTGAGACTTTTAAAGTTTGC
TGTTTCATATCATTTACATTATATTGCTCTTTGTTTATTCTTCGAAAACT
TAATGAGGAACGGCTTACGTTCATTTTACTAAAAGTGCCTAGAATTCAAG
AGATTAGAGTATTTGGAATTCCAACATactatgttgaaaaatttcgGTTT
TACTCATCAACTGTATTCTTTTTTCTATAAAAGCCCTCTGCCAGGTACCA
AACCTGTTATTTTATAAGGTGGAgctgatttgtttttttttctacattta
ATTTATCCCTTCAGGACTACCAGTACCTCCAAGACCAAAGCAAAAAGTGA
CACACCCTATACCAGTTCCTGAATCTCTTCATTGTAATGATTGCAACATG
ACAATGAACTCTGAAGACCAATATGTCCAACACATGAACAGTAAAAGGCA
CAGAGAAAATACGTCAGGTATTctatgggccacccagtggcgTGCATGAA
TGCGCAAATGGGCATTTTATGGTTGTTTgaatgtttgaagaaaaaaaagc
cTCAATGTTTTGCTTTGACACAgaaattcactttttgattgctTGGTGAA
TCTGtgcaattttgtgaatttttcctttttccacAGATTATGTGCAAAAC
TCTGTGAAACACgagaaaaatttgaatgaatgcatgaattttgggtccgc
tggacGCCTTTCCTATTGGGTGCACACAGTTACTATTTTGACATTCATCA
GTCTTTTTGGCAGTATTAGTTCAGTCGTATTGTCTGAACTGCAGACTTCT
ATAGATATATTtccctataagaaactttttccatGAGAGAATGAGCATTA
GCCTcgtttatgttttaaaatgaaatttaaataaTTCAACGAATATTCCC
TGTTGGTATTTTGAAACTTTGCTTGAACCGGGGAtgctttttccaatttc
aaataagaaacttttaaaaaccttttttcatgaattttattcTGAAATTT
CCTATTTTTTGACAGTTCCTATAATCCCAAAAAACTTTCTTGCTAATCCT
ACTGTACACGATTTTGCTGTCATTACATTACACAGAATTATTATCAGACA
CCCCTTTTATATTAAGGTGTATACTATTATCCAAAAAACAAAGTCTGCCC
AATGTCGTAGTCACTGTCACAAAATATCAGATTAACTAGGTACTACCCCA
AGTTCAAATTTCCCAGCATGCTAATGCTATTTGGTGAATTACTAAATGTA
CTCTGTTTGATACACAAGAAGGTTAATTGAgagaaatttcatttaaaatt
tattattttgatagTAAAAATGATTTGCTTTccaactaaagtctattcac
gataagtgtgcactcttttttcatttacttataacttttgaaggaattct
tcaatctttataaatttggtatcattggaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTGAagatgaaaacgaagaagaaaaaaatgaagatcttgtagaa
aagtgctataactatcattttcactgaagtgaaaccttgattatcgaacg
tcatcactgtgaaaagatttctcaaaattaatcattcagtcaaaagatat
caaacaaagctataagctaattgacgtctaaaaacactgttttctgctgt
tttctgctgttttttggggtcaatcacttattgattttgtatcataactt
tttattgaataaatattttagtgaaatttcttcacagtgatgacctccaa
agatcaaagaatctctccagtgaaaatgaaagttatagcacttttttaca
agatcttcatttttttcttcttcattttcatcttcatttttagaattatt
ttgaagattttcttacttcaaattgttccactcacaaatatctctccaac
gatatcaaatttataaagattgaagaattccttcaaaagctatagctaaa
agaaaaaatagtgcacacttatcgtgaatagactttagaatgAGCCTTTG
ATGATTTTAGGTGGAAATTACAACCCCAATCAAAACAGAGGTATCAAACG
ACCAGCACCAGGTAGTGATCGTGGTTCTGGGCATGGTGGTGGAGGCAGAG
GTGTACCTCGAGGTTTGAGCAGAGGAGCAACTGGCAGTTTCAGTAGAGGG
CGTGGTGCCACCAGAGGGGGATTCCAAGGTTCAGACAGAGGAGTTCCGCA
TGGTAGAGGAAGAGGCCAATCTCATAATGCGGGTAGGGGAGCAGGTAGAG
GCAGAGGGCGTGGCAGCAGTCGGGGAAGTCCTTCAATCAGTCGAGGTGGT
GGTGGCGGTCAAAGTGCCGAATGGTGGAGGGATGATGGTCCTACTCCTGC
CAAGATGCAGAAAGAAAATGATACCAATTTTTCAGGTTTGATTTATAAGT
CGATTAGTTATTGATTAAAATGGTGAAAGGTATGGTACTTGCAATTAGCA
ACTTctgtttttttgcaaaactttttcaaattaaaaagtaaaatttcttc
aaaacaattaccgtattacttcgaataaacgcccccttcttttaaacgcc
ccctcgaataaacgcccatcctaaaagaaaaataatttaataaacgcccc
cctcaaataaacgccccctttgaATGAACGCCCCCTCtaggggaggggcg
tttattagaaacttatgactttaatacttcaatatcagtgttgattgggt
ttgaaagggaagattttagtcatttcttgtaaccaaAGCAGTTTCCGATG
CAATTTCAAtcgttgaaccaaagaaattttgcactataatcctgataaag
aactaaaacaaagaaaGGGTATATTTGTTCTAAATATTCGAATTTAGact
aaaataattcaataaacgcccccttcttttaaacgcccccttcgaataaa
cgccactcctaaaatcgaaaaaatttaataaatgccCCGGGCGTtgattc
gaagtaatacggtaaaaTTTTAAGCACAGTTTTCTCATTTAAAATCATTC
TTTACTTTTAGAAATCAGCAACCCTAAGCCTTGGATTAGAGGAGGATTCA
ATAACATGAGGGGTGGAAGGAGAGGCGGACCACCCTCAAGGGGTGGTGGT
GTTATAAATCGTTTGCAAAGTATGGCGAGTTAAGATCGATCTTTGATTTT
ATTGTGAATTTCctctaaatttttatttttgtttcttttttcactttttt
aacctttttttaaaagaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005558XLOC_005558Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009912-exon-sc0000100-1491911889:342979..343641TCONS_00009912-exon-sc0000100-1491911889:342979..343641Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1510915933:342979..343641TCONS_00009912-exon-sc0000100-1510915933:342979..343641Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1575043694:342979..343641TCONS_00009912-exon-sc0000100-1575043694:342979..343641Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1491911889:343787..344198TCONS_00009912-exon-sc0000100-1491911889:343787..344198Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1510915933:343787..344198TCONS_00009912-exon-sc0000100-1510915933:343787..344198Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1575043694:343787..344198TCONS_00009912-exon-sc0000100-1575043694:343787..344198Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1491911889:344582..344658TCONS_00009912-exon-sc0000100-1491911889:344582..344658Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1510915933:344582..344658TCONS_00009912-exon-sc0000100-1510915933:344582..344658Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1575043694:344582..344658TCONS_00009912-exon-sc0000100-1575043694:344582..344658Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1491911889:345126..345195TCONS_00009912-exon-sc0000100-1491911889:345126..345195Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1510915933:345126..345195TCONS_00009912-exon-sc0000100-1510915933:345126..345195Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1575043694:345126..345195TCONS_00009912-exon-sc0000100-1575043694:345126..345195Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1491911889:346839..347213TCONS_00009912-exon-sc0000100-1491911889:346839..347213Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1510915933:346839..347213TCONS_00009912-exon-sc0000100-1510915933:346839..347213Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1575043694:346839..347213TCONS_00009912-exon-sc0000100-1575043694:346839..347213Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1491911889:347840..348048TCONS_00009912-exon-sc0000100-1491911889:347840..348048Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1510915933:347840..348048TCONS_00009912-exon-sc0000100-1510915933:347840..348048Clytia hemisphaericaexon
TCONS_00009912-exon-sc0000100-1575043694:347840..348048TCONS_00009912-exon-sc0000100-1575043694:347840..348048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:342979..348048 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.9887	27.3635	23.9103	27.3928	15.3793	16.7805	15.4265	21.023	6.28721	8.95923	4.7176	3.69564	8.39041	10.8811	10.0352	8.4223	12.6789	9.29175	2.4311	2.30946	11.505	10.7688	22.4857	21.52	11.4136	12.4526	6.61152	9.80679	16.8625	16.5921
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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