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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009901 ID=TCONS_00009901|Name=TCONS_00009901|organism=Clytia hemisphaerica|type=transcript|length=324bp
ttaaattATAAGCTGCTTTAGATTTCTTTTTCGTTCATTTTGCACGGTTG
ACTGAACAAATATAATTGCAAGATTGTtcaagttttataaaaatatgttt
gttttttcatatTGTGAATTATTAGAAAATGTAACAAATTTCATTAAACA
TTCAGtattttttgacagattttaagTGTAAATTTGAGACTTGATTTTTC
TGAGGTGCACAGAGATAGGATGTGGCTGAGGCCACTGAAGCTGCTTTTTG
CTTACCTGATCACAACATTTTCCTACACCATCACGAGTGCTCACGCGAAA
CCCAATACCAAAGAAAAACAATCG Run BLAST on NCBI transcript from alignment at sc0000100:126685..128554+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009901 ID=TCONS_00009901|Name=TCONS_00009901|organism=Clytia hemisphaerica|type=transcript|length=1870bp|location=Sequence derived from alignment at sc0000100:126685..128554+ (Clytia hemisphaerica)
ttaaattATAAGCTGCTTTAGATTTCTTTTTCGTTCATTTTGCACGGTTG
ACTGAACAAATATAATTGCAAGATTGTtcaagttttataaaaatatgttt
gttttttcatatTGTGAATTATTAGAAAATGTAACAAATTTCATTAAACA
TTCAGtattttttgacagattttaagTGTAAATTTGAGACTTGATTTTTC
TGAGGTGCACAGAGATAGGATGTGGCTGAGGTAACAATATCAATTTATAC
ATATTTCTTTTATgagtaaaaattaaattttgtgattttgcgaATTTCta
ccattttcatgaaattgattACTGACTCCAGAAATTAAATCCATggcgaa
attttcgaaatcGCATATGCGGCGGAGGAGCTAGTAAAAATCCTCTTTTG
GTGGAGAAGAATAGCAATTTTCACCtgactttttggctttttcgcgaaat
taaactCACACGAAACTTTCAAAACTCCGACTCgctaaattaaatccaga
aaatttcgcaaaTCTTTTAccttgcgaaatttaatctcgcgaaattcaat
ccgattaaagtaaaaCCCCAATTTTCGGCTCAGGGCTCGAGTAGGATATT
CCGGATTTCAGCCAGAAACTTGTTTATGACTTTTGAGCCGAAAATGCGTA
GCAACTTATTCAAAAATGTTTGCTTTTCATCTTATTTTATGTCCAAAATA
CCCCAAATTTGGTATTCAAGTACCATCAGTACACATCTTAATGCTAAAAA
TGCCTCTTTCTTCTCTAGgtattttttgttgcttttccTGATTACGCTCA
GTTTCAGAGCTAGGCTGCTAAGGCCAAGTTACTTAATTTTGTGGCCATTT
TCAGTACTGGACccttagcaactcggttgcttataaaaaagaagtcttta
tgttgggaaattcaccggggagTTTTGAAACCACCATTGATTTGTAAGTG
TTCCAAACTAGGTTCGAAGGGtcgagttttaacactagacttaggACTCA
GGGCCTTAGGGTCTGAGGAtccaaatgttcaaaaataatccaataaggct
cagaatatagcctggaagtctgccaaccccttccaaattgaaatattcga
ttaaattaaagaaatagcccaaaatcgactttctcgccggaactttaaat
cttgaaaaacgttaaaataaccagaaTTCTctatatatttcaaccatgat
tgtagaccTATCTTCCCCACATACTTTATCAGAGTGGTGGAGTCGATTGT
TTTAGACACATGTTTAGCGAACAAGCGCGATGCGGAAGTACATTTTTCTC
GATGTCCGTGAATTATGAGCGGGTTATGATTTTATGACTTCAGTTTTTCC
ACATTTTTTGAGAATTCGAAAAtgattttgtaaaagaaatttaatactCG
CTTTTTATCAAAGTGTTAGTCTTATCGATCCTCTTAGTCACAATTTCATG
CCTATTTCAAAAACATAACTATTTCATGAAATGTTTTATGATAATCATGA
CGCAATGTTTAAAAGAAACACCTCAAATAGCCCAGGCGTTTGTCAATGGT
TTTATGGATTTTCTGGGTGCTCATgtatcccagctgacacacaacgtttt
ttcaacgttcatctaacgttataatatggacgttgtgaatatcagaaaaa
cgttaaaacgacgTTGTGTTCCAGCTGGGATAAAACATTCCGTCATTAAT
TTAAATTAATATCATATGAACATAATGTAAAAATCGagaaattagttttt
ttacaaaatcattTTCTTGTCACCAGGCCACTGAAGCTGCTTTTTGCTTA
CCTGATCACAACATTTTCCTACACCATCACGAGTGCTCACGCGAAACCCA
ATACCAAAGAAAAACAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009901-exon-sc0000100-1491911889:126685..126914 | TCONS_00009901-exon-sc0000100-1491911889:126685..126914 | Clytia hemisphaerica | exon |
| TCONS_00009901-exon-sc0000100-1510915933:126685..126914 | TCONS_00009901-exon-sc0000100-1510915933:126685..126914 | Clytia hemisphaerica | exon |
| TCONS_00009901-exon-sc0000100-1575043694:126685..126914 | TCONS_00009901-exon-sc0000100-1575043694:126685..126914 | Clytia hemisphaerica | exon |
| TCONS_00009901-exon-sc0000100-1491911889:128461..128554 | TCONS_00009901-exon-sc0000100-1491911889:128461..128554 | Clytia hemisphaerica | exon |
| TCONS_00009901-exon-sc0000100-1510915933:128461..128554 | TCONS_00009901-exon-sc0000100-1510915933:128461..128554 | Clytia hemisphaerica | exon |
| TCONS_00009901-exon-sc0000100-1575043694:128461..128554 | TCONS_00009901-exon-sc0000100-1575043694:128461..128554 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000100 | supercontig | sc0000100:126685..128554 + |
Blast
The following BLAST results are available for this feature:
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