TCONS_00009898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009898
Unique NameTCONS_00009898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009898 ID=TCONS_00009898|Name=TCONS_00009898|organism=Clytia hemisphaerica|type=transcript|length=1417bp
GAGAGAAAATGTTGAGATAGTGGTGACATTGTGGGTGTGGCAGACACTGT
aataatatgttttttttttcacttgatatCGAGagagtttaaaaaaatta
aatttgccGCTTGAATGAATTATGCCGAATATTTATAAACAAGAGgtttt
gttattcaaattataattttagatttttttttaaatgtttatcaatgttt
tgaaagTGTTTGGATTCTGATTTTGAACCATGCCCTGGGAATGAAATGTG
GAAAAAatattTTCAGCTCTTTTATGCTTACCTGATTGTAGTCTTTTTCT
ATACCATCACCGTGGTTCACGCGATATCAAGTAGAAAAGAAAGAAGGGCA
CTGAAGTTAGtaCCTGTGCCAGAAGCGCCATTAGAAGAAAATGGAAAGAA
GAGATTAACCATGTGGGGTGAGAAATGGTGCGGAAGTACaattaaagaga
aagtattGCAAGAAGATTCAAGTACACCAGAGACTCTGACTTCCGGTTTG
GAGACCTGTTGTAATTTACATGACGATTGCCCACtcgGTATGCCACCAGA
CTCACAGAAGTGGGACACAGTAAACAACTCAGAGTACAGTCTAGCTGATT
GCCAATGTGATAATCTCTTCTACAACTGCTTGAAAACGGACGGTGGATGG
TCGGCAGAAACAGTGGgccgtttttttttcaatgttctTTCTATACCATG
CGTCGAAATTGAAGACGGCGTCAATTTGGATGAGCCAAGCACAGGAAAAT
CAGAGACTGGTCAACTAGACTATGCAGCTGAATCGGCTAAACATAATAAC
GGAAATGGAAATGGAAATGGGAACGGAAATGGAAATGGGAACGGTAATGG
AAATGGGAACGGTAATGGAAATGGGAACGGAAATGGAAATGGCAACGGAA
ATGGTGGCTATGGAAATGGACCAAGACGAGGTTATGGAAATAATAATAAA
CCACCTCATAAGCCACATGCGAAAATTGTTAAAGCGAGATTGTTTTGATT
AACCAAATCGATTGCTTGGTTTAAACTTGGTTTCTAACTATCCATGATAT
GCATCATTACAATGTATTTCACGAACCCAACAGCtcattggttgcaagtg
acgtattaaatgattttacgtcacttaaacaaccaatcagctgttggtta
catcagaagacattgcaatggcgcATATCATGAAGTGCTATCTTCCAAAG
GCGCACTGCTCGTAGATATTGTGATAGAGTTAAATGTCggatattttttg
gaaagtcAACCAAGAATTGTGAATACCATCTTTTTGTACGTCTATAAGAC
GTCCATAAGACTTTAGATCAAGGTCCAGATGGCATCGTGTGTGAGCTCTA
CTTATTTACCAgaaatttatcgaaaaatgaTTTACGTATATTAAAAATCC
TGGTGAGaggtagcctg
Run BLAST on NCBI

transcript from alignment at sc0000100:117288..122420+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009898 ID=TCONS_00009898|Name=TCONS_00009898|organism=Clytia hemisphaerica|type=transcript|length=5133bp|location=Sequence derived from alignment at sc0000100:117288..122420+ (Clytia hemisphaerica)
GAGAGAAAATGTTGAGATAGTGGTGACATTGTGGGTGTGGCAGACACTGT
aataatatgttttttttttcacttgatatCGAGagagtttaaaaaaatta
aatttgccGCTTGAATGAATTATGCCGAATATTTATAAACAAGAGgtttt
gttattcaaattataattttagatttttttttaaatgtttatcaatgttt
tgaaagTGTTTGGATTCTGATTTTGAACCATGCCCTGGGAATGAAATGTG
GAAAAAGTATGGAAATGattctttttatcaaaatttctatTCTTAGTTAA
TTATTTTTGCATTCAGTCAAATGTCTTATTAAGTTTTCTCAATTCATTAA
AGTAGCATTGATTCAAAGCATCAATTTgtacaaaaatgaattttatgttG
CAAAATCAGCCCTTTTACAAGAAAATTGGTACCGAGAAGACCAAATTAAG
GTGCTCTCTGGTTGTCAAAATCCCCAGAAAAATTAGTAAATGTGTACTTT
GCGGTGGTATGCAAAAACATCTCGAAAACCCTTTTATATATCAATCTCTT
CGATTTTAGTACCGATCCCCTGTTAAATTTAGGCTGAATTTGGGATCCTA
ATCTATGTataaatattttaagatgattctctcaaaaaaactaaaaaatc
caCCGATGAAAtgtaaaaagcgtgtatcttaCCGCCATGTAGACAGCAAA
GAGGATACCTAACTGGCACACAAACGTTGTtgcaacgttcatctaacgtt
cacaacgtccacataacgttagatgaacgttgaaacaacgttgtgtgcca
gctgggtaaaaACAGTCAAATGTCTCTCTTGTGTAATGATCTTTAAACtc
gtttttttatttagatattTTCAGCTCTTTTATGCTTACCTGATTGTAGT
CTTTTTCTATACCATCACCGTGGTTCACGCGATATCAAGTAGAAAAGAAA
GAAGGGCACTGAAGTTAGGTAAGGATTGAGACTCTCAAGCGATGGTAAGG
TATGGTATTTTGATTTCACAGATTAACTTTCCAccgttggaaaaaaatca
ttatatcAGGCTCTCTAgaattatttaaaggttttatttttacataagtg
ttcctgtttcatatcaggacagtgtcttcctattgttattaTGCtgttat
aagcaaaaaatgtttttcttttcctatttctgaccaatcttgctccacat
ccgtgtcaatcactatcatttaaaaacaaaaccttgctgatttcaaatat
atattcatATCTTGAccatttttcttagaaaaaaatttacagCCTTTTGA
GGTTGCtctattttggcaaattttggtCGTTATAGGCCTTCCTTGGACTG
TAACTTTATATTCATAACGAATAcgaaaaatttaatcaaaaatttaaaat
cagaaaggtttattttctaaaaagtttGATGTCGTGATTTTTTAAACCAA
TAGAAAACCAAATAGATTCTTCTTcttactaatatctttccaacgatgtg
TATAGACTGATgtatgattttcattttttttagtaCCTGTGCCAGAAGCG
CCATTAGAAGAAAATGGAAAGAAGAGATTAACCATGTGGGGTAAGAtaat
tacagttgactctctctaattcgattttcaagatgAATCGGGTTtccatc
gaattagagaaatattcgaataacaGATGGCAATTTAAACGACTTCCTAG
ATGAGGGGgccaatattttagttcaaaTTACATAAAGATTCGGAATTTAG
GAGAGTTGACAattacaccttttcgaccgtagtcgtgcgatcaggcgcgt
gccacttttatCCCGCTAAActcaatccaatcctttttaGACACATTTTT
ATAATGTCTATTGGtgcaaaaaaaggactgggacggttttactgggataa
agtggacaaaaaatGGTGTATTACTATTTATCAGGTACGTCAGAAATAAG
TTATCCCCTTTGATCTAAAATTTCTgtatcaattttttaaaataaatcaa
atcttCGTCAGAAGACAGAATTCTTTTGATTTCATATTCAACTTTTAATT
TAATTCAACAAATTATCTAATAGAATTTATCTATTAAATTAATCTTTCCT
TTTTCAAACGAAAGAAGGTTgattcttaaaaaataatagaactttttttt
taaagagggtAGCCTATTTTTGGTAGACTGGGTAAGTTCCAGGATGTTCC
TGTTATCACGGAGGAAATTTGATAGTACCCTATTTGACAAGACTAATCCA
TGGCAAAATCCAGGGGGCACTTCGgtaaaattgggtacggggacgtaCCG
TTGGTTAGTGTCTCTTTTtcaggctctgaagatatctgacagggtccaaa
aTTTACCAACTCTTAAGGTGTGTATCTGATAGGATCAACTTTTGGTAATT
GTTGACAATTTCCAGGTTGGAAAATTCTTCGTTTTAGTTATTTTGGCCAC
TTTTAAGGGTGAATATGTGAAAAAtgtgaaagatttttttcggacaaatt
TACCTAATAttgatatctgacagggtccattttAAAACTCCAGCGGCATG
TCTCTGTCCGTCCTCATAGGCCAGTGCCTCTCCCCCCCCCGGTGGCAAAT
CTAATTTTTAggaacaagttttttttttaaagtaaatgaCTGATGACTGA
TTTGTCAAGTATTTAGACCCCTGCAAATTAAATCTCTCCCATTTAGGATA
GCCGAttgtattgattgattgattgattgattgattgattgattgattga
ttgattgattgattgattgattgattgattgattgattgattgattgatt
gattgtagGTGAGAAATGGTGCGGAAGTACaattaaagagaaagtattGC
AAGAAGATTCAAGTACACCAGAGACTCTGACTTCCGGTTTGGAGACCTGT
TGTAATTTACATGACGATTGCCCACtcggtatgacttttttcattgtttt
gtatttttattttaactatGTGGCATAAATCCTGAACCTTAATTTTGCCG
AATTTCAGTTAAAGTCAGAACTTGCTGCATCGCCAAAATAGGTTTTTTCC
acaatacaccttatcggagtttttgatttttctaaaaaagcattgcattg
tgggattgtttcgggggtatcaaaatagaattccctcgaggaattcctaa
gattTCTATTGtgatactcccgaaacaatctcataatgcatcgctttttt
agaaaaatcaaaaactctgataagatCTATTCTTATCTTTTATAGAAATA
GCccctgtttttctttaaaacgcTCATTTTCAGGCAAACAATAACGACTA
TATATCTACGTCTTGCCAAAGTTCTCTCTGGCCAAAATCCCTATAAagtg
ccatggtgattaacttttagcggattttattaaaactactttctatttat
aaaaaaaatcatttaatgtctcaagggacataatcaccatggtaattgtt
cgTGGCGTAATttaagaaaaggtctatttattcACATAGTAATAAGGGTA
GACATTCCGGGGCAGTGGATTACCAAATGACGGTATGTgtggcgaaaaaa
ttggctctGTCTGACCCACCCATTTTAAGCCTTAAAACgcagtttttttt
gctcatttgATAAcgattttgaccaaaaatatcctacatccgccaaatta
aattcccgccaaaatttcttcctttaaggtagacaTTTGCCTGTCCAAAA
TTTTAGTCGTTCTTAAACGAGTTTCATTTACTGTTATTTCAAGGTATGCC
ACCAGACTCACAGAAGTGGGACACAGTAAACAACTCAGAGTACAGTCTAG
CTGATTGCCAATGTGATAATCTCTTCTACAACTGCTTGAAAACGGTTTGT
ATGATATTATATAATCGCTTTTGTATAAATTAGGGTGGCTCTAAATCTGA
AAACTACCGTATTAGCTTTCAAAATCGTATAGTGCACCTGTAtggtgcag
agaaaatttacccaaatttgagtaaattgttCGTTTGGAAAGGtctttta
aaattaaataaCCATCATGAACGAGATTTAGCTAAATAGTGAATAGTACA
GAAACAGTCAAAACTACTTCTCCGTAAGGTCCTACTTTGATTTCATACAC
CCTGATTTACTTAAAAGATATCTAAAAGTCATAGATATCTGAAAGTCATA
AATATCTGAAAGTCTGTAACTGCTATTCTATCTTCCTTGTCATGCGAACG
TAACTTAATAACAGCTGTAGAAAGTCTGAATGCGACAAGCTGATGTTCTA
AAGATCGCTGAAAACTGTATATTTTCGCAAACGCTTCACCGTACTAACAC
AGTATCTGCTATCAAGTTACGTCAACGgatctatttctattttatcGCAC
TCAGGACGGTGGATGGTCGGCAGAAACAGTGGgccgtttttttttcaatg
ttctTTCTATACCATGCGTCGAAATTGAAGACGGCGTCAATTTGGATGAG
CCAAGCACAGGAAAATCAGAGACTGGTCAACTAGACTATGCAGCTGAATC
GGCTAAACATAATAACGGAAATGGAAATGGAAATGGGAACGGAAATGGAA
ATGGGAACGGTAATGGAAATGGGAACGGTAATGGAAATGGGAACGGAAAT
GGAAATGGCAACGGAAATGGTGGCTATGGAAATGGACCAAGACGAGGTTA
TGGAAATAATAATAAACCACCTCATAAGCCACATGCGAAAATTGTTAAAG
CGAGATTGTTTTGATTAACCAAATCGATTGCTTGGTTTAAACTTGGTTTC
TAACTATCCATGATATGCATCATTACAATGTATTTCACGAACCCAACAGC
tcattggttgcaagtgacgtattaaatgattttacgtcacttaaacaacc
aatcagctgttggttacatcagaagacattgcaatggcgcATATCATGAA
GTGCTATCTTCCAAAGGCGCACTGCTCGTAGATATTGTGATAGAGTTAAA
TGTCggatattttttggaaagtcAACCAAGAATTGTGAATACCATCTTTT
TGTACGTCTATAAGACGTCCATAAGACTTTAGATCAAGGTCCAGATGGCA
TCGTGTGTGAGCTCTACTTATTTACCAgaaatttatcgaaaaatgaTTTA
CGTATATTAAAAATCCTGGTGAGaggtagcctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005550XLOC_005550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009898-exon-sc0000100-1491911889:117288..117543TCONS_00009898-exon-sc0000100-1491911889:117288..117543Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1510915933:117288..117543TCONS_00009898-exon-sc0000100-1510915933:117288..117543Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1575043694:117288..117543TCONS_00009898-exon-sc0000100-1575043694:117288..117543Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1491911889:118152..118255TCONS_00009898-exon-sc0000100-1491911889:118152..118255Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1510915933:118152..118255TCONS_00009898-exon-sc0000100-1510915933:118152..118255Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1575043694:118152..118255TCONS_00009898-exon-sc0000100-1575043694:118152..118255Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1491911889:118821..118877TCONS_00009898-exon-sc0000100-1491911889:118821..118877Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1510915933:118821..118877TCONS_00009898-exon-sc0000100-1510915933:118821..118877Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1575043694:118821..118877TCONS_00009898-exon-sc0000100-1575043694:118821..118877Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1491911889:120096..120215TCONS_00009898-exon-sc0000100-1491911889:120096..120215Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1510915933:120096..120215TCONS_00009898-exon-sc0000100-1510915933:120096..120215Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1575043694:120096..120215TCONS_00009898-exon-sc0000100-1575043694:120096..120215Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1491911889:121031..121131TCONS_00009898-exon-sc0000100-1491911889:121031..121131Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1510915933:121031..121131TCONS_00009898-exon-sc0000100-1510915933:121031..121131Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1575043694:121031..121131TCONS_00009898-exon-sc0000100-1575043694:121031..121131Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1491911889:121642..122420TCONS_00009898-exon-sc0000100-1491911889:121642..122420Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1510915933:121642..122420TCONS_00009898-exon-sc0000100-1510915933:121642..122420Clytia hemisphaericaexon
TCONS_00009898-exon-sc0000100-1575043694:121642..122420TCONS_00009898-exon-sc0000100-1575043694:121642..122420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:117288..122420 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.117476	0.114558	0.0997592	0	0.198029	0.281673	1.49681	1.64461	0.494974	0.299064	0.913484	1.55707	2.40829	2.27562	1.26141	3.8232	1.93439	1.59706	0.0312199	0.090954	1.18094	1.50218	0.850287	0.988218	2.01806	2.59465	0.344756	0.0990674	0.745129	0.393898
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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