TCONS_00009891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009891
Unique NameTCONS_00009891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009891 ID=TCONS_00009891|Name=TCONS_00009891|organism=Clytia hemisphaerica|type=transcript|length=567bp
GCAAAATTGAACGCAAGCTCCGAAATAAAATGAAGTCCATACAAGAAGCG
ATAGACGCCGAAAATGAAGAGTTGGCAAGAGCAGAGATGGCAGCCACAGA
CCTTCTTTTCAAAGACTTTATGGAGCTACATGCAAAGTGCATGATGCTGA
TGAATGAAGACGCCGAGCTCTTACTGTCAGAGTCGTTTGCTGACAGGGTC
GATAGAGACGTTCATAAACTTAAAAGGAAGTTTTACGATTTCATAAATCA
GCACCCCGAACCTCAATACGCTGGAGATGAGACCAGCAACAAATCCCTCG
AAAGATCGAAAACACCCAGCGAAGTATCAAATTCAAACAGGAGATTGAGC
CCACGATCGAGTCGCAGGGCCAGTGCCAAGTCAGGCAGTTCTTCTTCGTG
TCAAAAGAAGACCTCATCAGGAAGCCATCAATCACAATACAGTGCTAGAC
AAGCAGCCCTCGAAGAAAGAGCAAGAGTAGCCGAGTTGGAGATCGAAGAG
TCTTTTATACAGTTCCAAGAAGAGGCTCGCAAAAAGGAAAAGCTTTTGAC
CAAACAAATGGAGCTCG
Run BLAST on NCBI

protein sequence of TCONS_00009891-protein

>TCONS_00009891-protein ID=TCONS_00009891-protein|Name=TCONS_00009891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
KIERKLRNKMKSIQEAIDAENEELARAEMAATDLLFKDFMELHAKCMMLM
NEDAELLLSESFADRVDRDVHKLKRKFYDFINQHPEPQYAGDETSNKSLE
RSKTPSEVSNSNRRLSPRSSRRASAKSGSSSSCQKKTSSGSHQSQYSARQ
AALEERARVAELEIEESFIQFQEEARKKEKLLTKQMEL
Run BLAST on NCBI

transcript from alignment at sc0000099:643450..644016

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009891 ID=TCONS_00009891|Name=TCONS_00009891|organism=Clytia hemisphaerica|type=transcript|length=567bp|location=Sequence derived from alignment at sc0000099:643450..644016 (Clytia hemisphaerica)
CGAGCTCCATTTGTTTGGTCAAAAGCTTTTCCTTTTTGCGAGCCTCTTCT
TGGAACTGTATAAAAGACTCTTCGATCTCCAACTCGGCTACTCTTGCTCT
TTCTTCGAGGGCTGCTTGTCTAGCACTGTATTGTGATTGATGGCTTCCTG
ATGAGGTCTTCTTTTGACACGAAGAAGAACTGCCTGACTTGGCACTGGCC
CTGCGACTCGATCGTGGGCTCAATCTCCTGTTTGAATTTGATACTTCGCT
GGGTGTTTTCGATCTTTCGAGGGATTTGTTGCTGGTCTCATCTCCAGCGT
ATTGAGGTTCGGGGTGCTGATTTATGAAATCGTAAAACTTCCTTTTAAGT
TTATGAACGTCTCTATCGACCCTGTCAGCAAACGACTCTGACAGTAAGAG
CTCGGCGTCTTCATTCATCAGCATCATGCACTTTGCATGTAGCTCCATAA
AGTCTTTGAAAAGAAGGTCTGTGGCTGCCATCTCTGCTCTTGCCAACTCT
TCATTTTCGGCGTCTATCGCTTCTTGTATGGACTTCATTTTATTTCGGAG
CTTGCGTTCAATTTTGC

Coding sequence (CDS) from alignment at sc0000099:643450..644016

>TCONS_00009891 ID=TCONS_00009891|Name=TCONS_00009891|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0000099:643450..644016 (Clytia hemisphaerica)
GAGCTCCATTTGTTTGGTCAAAAGCTTTTCCTTTTTGCGAGCCTCTTCTT
GGAACTGTATAAAAGACTCTTCGATCTCCAACTCGGCTACTCTTGCTCTT
TCTTCGAGGGCTGCTTGTCTAGCACTGTATTGTGATTGATGGCTTCCTGA
TGAGGTCTTCTTTTGACACGAAGAAGAACTGCCTGACTTGGCACTGGCCC
TGCGACTCGATCGTGGGCTCAATCTCCTGTTTGAATTTGATACTTCGCTG
GGTGTTTTCGATCTTTCGAGGGATTTGTTGCTGGTCTCATCTCCAGCGTA
TTGAGGTTCGGGGTGCTGATTTATGAAATCGTAAAACTTCCTTTTAAGTT
TATGAACGTCTCTATCGACCCTGTCAGCAAACGACTCTGACAGTAAGAGC
TCGGCGTCTTCATTCATCAGCATCATGCACTTTGCATGTAGCTCCATAAA
GTCTTTGAAAAGAAGGTCTGTGGCTGCCATCTCTGCTCTTGCCAACTCTT
CATTTTCGGCGTCTATCGCTTCTTGTATGGACTTCATTTTATTTCGGAGC
TTGCGTTCAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005545XLOC_005545Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009891-proteinTCONS_00009891-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009891-exon-sc0000099-1491911889:643450..644016TCONS_00009891-exon-sc0000099-1491911889:643450..644016Clytia hemisphaericaexon
TCONS_00009891-exon-sc0000099-1510915933:643450..644016TCONS_00009891-exon-sc0000099-1510915933:643450..644016Clytia hemisphaericaexon
TCONS_00009891-exon-sc0000099-1575043694:643450..644016TCONS_00009891-exon-sc0000099-1575043694:643450..644016Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:643450..644016 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.89031	1.84234	1.2224	1.46947	0	0	0	0	0	0.31032	0.301204	0	1.15503	0.742095	0.339427	0.942008	0	0	0	0	0	0	0.454504	0.14128	0.106399	0	0	0	0.109993	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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