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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009890 ID=TCONS_00009890|Name=TCONS_00009890|organism=Clytia hemisphaerica|type=transcript|length=1740bp
AAGAAATTGAGTGTCTCAACACCAACAAACCCATTCCAAGATCGTCATCA
ATTATCAAACTTGACCCATTCTTAGACGAAAACAGGATCCTACGTGTCGG
TGGCAGGTTANACTGAGACGAAACTGATACAACTTTCACAAAGTCAATTC
TACTACGAAGAAATTGAGTGTCTCAACACCAACAAACTCATTCCAAGATC
GTCATCAATTATCAAACTTGACCCATTCTTAGACGAAAACAGGATACTAC
GTGTCGGTGGCAGGTTATCCAATAATTTACTACTTGACAACAACCTGAAG
CATCCAATCATCCTCAGCAAAAGAAGCAAGTTCTCCCTTATGATCGCCCA
ACATTGTCATTCTCTCGTTCACCATGCAGGACGAGGTATCACCATCAACG
AGATCAGATCGAGAGGCTACTGGATCACCAACATCAACTCAGTCGTTCGT
ACCCTCATCGCAAAATGTGTTCAATGTCGCAAGCTACGTGGTACAGCAAC
TCCTCAAAAGATGTCTGATCTACCATCTGAGAGATTTGACGAGAGCCCTC
CTTTCACAGTGTGTGGTGTAGACTACTTCGGACCCTTCattatcaaagaa
aaaaggaaagaacTTAAACGTTATGGATCCCTTTTTACTTGCTTCGCTTC
TCGAGCAGTCCACATTGAACTCAGCCACTCCCTTGAAACCGATTCCTTCA
TTCAGTCCCTCAGAAGATTCATCGCTCGACGTGGAAACATTCGTACCATG
CACTCCGACAATGGCACCAACTTCGTAGGAGCAGCAAATGAGCTTAGGAA
CGCTGTCCTTGAGCTTGACGATGACAAGATCAATCGATTTCTGAATCTAC
AAGGAGGAGATTGGATCAGATGGAAGAGGAACCCACCTTTAGCAAGTCAT
TTTGGAGGTGTGTGGGAAAGACAGATCAGGTCTGTAAGATCCATTCTCAA
TTCATTGCTATCAACTCATGGTCACAGTCTCGATGATGAATCCTTTCGTA
CTTTTATGTGTGAAGCAGAAGCAGTCATAAACTCCAGACCGTTGACAACT
GAAACGTTGAGCGATCCATCAAGTCCACTACCGTTGTCACCTTCCAACTT
ACTCACCATGAAGTCGAACGTCGTCGCTCCACCGCCTGGCGAGTTCAAAT
CAGCAGGAGTCTTTACTCGTAAACGATGGCGTCGAGTCCAACATTTACTG
AACGAGTTTTGGTCGAGATGGCGCAAAGAGTACTGCCAAAACATCCAACA
ACGTTCCAAGTGGTTGAAAGAAAGACGTTCGTTCAAAGTCGGTGATGTCG
CCCTGTTGACAGACGCATCCGATATTCGAAACGAGTGGAGATTATGTATG
ATCGACGAAGTCATAACAAGTACCGATGGAAATGTCAGACAAGTCGTAGT
CCGGATGGCCGATGGGTCTCTGTTTAAACGTCCAGTATCGAAACTGGTCT
TGTTGGTTGAAGGAGATTCCCCGCCGATGAGCCTTATATAATTGAATGAA
ATTTAATTGTGATGTTTTATTTCGAGATGATATGAAAGGATATCTCGAGG
GGAGCCAAATGTTACTGCTGTATGTAGGCAACATATAGACGTGACGTCAG
GTATCCCTTGAGACGTCCTTCCATTagtaattattttctttattcagAAT
GCACGGTAATTAGTTTTGATAGTAATTGATTTTTGCGTGCATTCTTTGTA
CAGTCTTTTCTACATTTGCGTTCTCGTTTTTGATTCGCCC Run BLAST on NCBI protein sequence of TCONS_00009890-protein >TCONS_00009890-protein ID=TCONS_00009890-protein|Name=TCONS_00009890-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MIAQHCHSLVHHAGRGITINEIRSRGYWITNINSVVRTLIAKCVQCRKLR
GTATPQKMSDLPSERFDESPPFTVCGVDYFGPFIIKEKRKELKRYGSLFT
CFASRAVHIELSHSLETDSFIQSLRRFIARRGNIRTMHSDNGTNFVGAAN
ELRNAVLELDDDKINRFLNLQGGDWIRWKRNPPLASHFGGVWERQIRSVR
SILNSLLSTHGHSLDDESFRTFMCEAEAVINSRPLTTETLSDPSSPLPLS
PSNLLTMKSNVVAPPPGEFKSAGVFTRKRWRRVQHLLNEFWSRWRKEYCQ
NIQQRSKWLKERRSFKVGDVALLTDASDIRNEWRLCMIDEVITSTDGNVR
QVVVRMADGSLFKRPVSKLVLLVEGDSPPMSLI Run BLAST on NCBI transcript from alignment at sc0000099:637546..639285 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009890 ID=TCONS_00009890|Name=TCONS_00009890|organism=Clytia hemisphaerica|type=transcript|length=1740bp|location=Sequence derived from alignment at sc0000099:637546..639285 (Clytia hemisphaerica)
GGGCGAATCAAAAACGAGAACGCAAATGTAGAAAAGACTGTACAAAGAAT
GCACGCAAAAATCAATTACTATCAAAACTAATTACCGTGCATTctgaata
aagaaaataattactAATGGAAGGACGTCTCAAGGGATACCTGACGTCAC
GTCTATATGTTGCCTACATACAGCAGTAACATTTGGCTCCCCTCGAGATA
TCCTTTCATATCATCTCGAAATAAAACATCACAATTAAATTTCATTCAAT
TATATAAGGCTCATCGGCGGGGAATCTCCTTCAACCAACAAGACCAGTTT
CGATACTGGACGTTTAAACAGAGACCCATCGGCCATCCGGACTACGACTT
GTCTGACATTTCCATCGGTACTTGTTATGACTTCGTCGATCATACATAAT
CTCCACTCGTTTCGAATATCGGATGCGTCTGTCAACAGGGCGACATCACC
GACTTTGAACGAACGTCTTTCTTTCAACCACTTGGAACGTTGTTGGATGT
TTTGGCAGTACTCTTTGCGCCATCTCGACCAAAACTCGTTCAGTAAATGT
TGGACTCGACGCCATCGTTTACGAGTAAAGACTCCTGCTGATTTGAACTC
GCCAGGCGGTGGAGCGACGACGTTCGACTTCATGGTGAGTAAGTTGGAAG
GTGACAACGGTAGTGGACTTGATGGATCGCTCAACGTTTCAGTTGTCAAC
GGTCTGGAGTTTATGACTGCTTCTGCTTCACACATAAAAGTACGAAAGGA
TTCATCATCGAGACTGTGACCATGAGTTGATAGCAATGAATTGAGAATGG
ATCTTACAGACCTGATCTGTCTTTCCCACACACCTCCAAAATGACTTGCT
AAAGGTGGGTTCCTCTTCCATCTGATCCAATCTCCTCCTTGTAGATTCAG
AAATCGATTGATCTTGTCATCGTCAAGCTCAAGGACAGCGTTCCTAAGCT
CATTTGCTGCTCCTACGAAGTTGGTGCCATTGTCGGAGTGCATGGTACGA
ATGTTTCCACGTCGAGCGATGAATCTTCTGAGGGACTGAATGAAGGAATC
GGTTTCAAGGGAGTGGCTGAGTTCAATGTGGACTGCTCGAGAAGCGAAGC
AAGTAAAAAGGGATCCATAACGTTTAAgttctttccttttttctttgata
atGAAGGGTCCGAAGTAGTCTACACCACACACTGTGAAAGGAGGGCTCTC
GTCAAATCTCTCAGATGGTAGATCAGACATCTTTTGAGGAGTTGCTGTAC
CACGTAGCTTGCGACATTGAACACATTTTGCGATGAGGGTACGAACGACT
GAGTTGATGTTGGTGATCCAGTAGCCTCTCGATCTGATCTCGTTGATGGT
GATACCTCGTCCTGCATGGTGAACGAGAGAATGACAATGTTGGGCGATCA
TAAGGGAGAACTTGCTTCTTTTGCTGAGGATGATTGGATGCTTCAGGTTG
TTGTCAAGTAGTAAATTATTGGATAACCTGCCACCGACACGTAGTATCCT
GTTTTCGTCTAAGAATGGGTCAAGTTTGATAATTGATGACGATCTTGGAA
TGAGTTTGTTGGTGTTGAGACACTCAATTTCTTCGTAGTAGAATTGACTT
TGTGAAAGTTGTATCAGTTTCGTCTCAGTNTAACCTGCCACCGACACGTA
GGATCCTGTTTTCGTCTAAGAATGGGTCAAGTTTGATAATTGATGACGAT
CTTGGAATGGGTTTGTTGGTGTTGAGACACTCAATTTCTT Coding sequence (CDS) from alignment at sc0000099:637546..639285 >TCONS_00009890 ID=TCONS_00009890|Name=TCONS_00009890|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at sc0000099:637546..639285 (Clytia hemisphaerica)
TTATATAAGGCTCATCGGCGGGGAATCTCCTTCAACCAACAAGACCAGTT
TCGATACTGGACGTTTAAACAGAGACCCATCGGCCATCCGGACTACGACT
TGTCTGACATTTCCATCGGTACTTGTTATGACTTCGTCGATCATACATAA
TCTCCACTCGTTTCGAATATCGGATGCGTCTGTCAACAGGGCGACATCAC
CGACTTTGAACGAACGTCTTTCTTTCAACCACTTGGAACGTTGTTGGATG
TTTTGGCAGTACTCTTTGCGCCATCTCGACCAAAACTCGTTCAGTAAATG
TTGGACTCGACGCCATCGTTTACGAGTAAAGACTCCTGCTGATTTGAACT
CGCCAGGCGGTGGAGCGACGACGTTCGACTTCATGGTGAGTAAGTTGGAA
GGTGACAACGGTAGTGGACTTGATGGATCGCTCAACGTTTCAGTTGTCAA
CGGTCTGGAGTTTATGACTGCTTCTGCTTCACACATAAAAGTACGAAAGG
ATTCATCATCGAGACTGTGACCATGAGTTGATAGCAATGAATTGAGAATG
GATCTTACAGACCTGATCTGTCTTTCCCACACACCTCCAAAATGACTTGC
TAAAGGTGGGTTCCTCTTCCATCTGATCCAATCTCCTCCTTGTAGATTCA
GAAATCGATTGATCTTGTCATCGTCAAGCTCAAGGACAGCGTTCCTAAGC
TCATTTGCTGCTCCTACGAAGTTGGTGCCATTGTCGGAGTGCATGGTACG
AATGTTTCCACGTCGAGCGATGAATCTTCTGAGGGACTGAATGAAGGAAT
CGGTTTCAAGGGAGTGGCTGAGTTCAATGTGGACTGCTCGAGAAGCGAAG
CAAGTAAAAAGGGATCCATAACGTTTAAgttctttccttttttctttgat
aatGAAGGGTCCGAAGTAGTCTACACCACACACTGTGAAAGGAGGGCTCT
CGTCAAATCTCTCAGATGGTAGATCAGACATCTTTTGAGGAGTTGCTGTA
CCACGTAGCTTGCGACATTGAACACATTTTGCGATGAGGGTACGAACGAC
TGAGTTGATGTTGGTGATCCAGTAGCCTCTCGATCTGATCTCGTTGATGG
TGATACCTCGTCCTGCATGGTGAACGAGAGAATGACAATGTTGGGCGATC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009890-exon-sc0000099-1491911889:637546..639285 | TCONS_00009890-exon-sc0000099-1491911889:637546..639285 | Clytia hemisphaerica | exon |
| TCONS_00009890-exon-sc0000099-1510915933:637546..639285 | TCONS_00009890-exon-sc0000099-1510915933:637546..639285 | Clytia hemisphaerica | exon |
| TCONS_00009890-exon-sc0000099-1575043694:637546..639285 | TCONS_00009890-exon-sc0000099-1575043694:637546..639285 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:637546..639285 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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