TCONS_00009887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009887
Unique NameTCONS_00009887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009887 ID=TCONS_00009887|Name=TCONS_00009887|organism=Clytia hemisphaerica|type=transcript|length=501bp
TTCCTGACAAAATTATTCTTGCCATCAGGGCGCTCTACACCTCTACCAAG
GCAAAAGTTATCTCTCCTGACGGGGACACTGAAATGTTTGACACCCATGC
TGGTGTTCTTCAAGGAGACACCCTTGCACCCTTTCTTTTTATTCTAGTTT
TAGACTACGTTCTTCGTATTTCTATTGATCCTTTAAACTACAAGGGCATC
CAACTTACAGCCCAAAAAAGTAGAAGAAATCCCGCCACTTTTCTCACCGA
TCTAGACTTTGCCGATGATCTCGCCCTTGTCTCTGAGACCATTCAGTTCG
CAGAAAACCTTCTCCACTCTCTCGAGAATGCCGCTAGTCAGGTCGGCCTT
TTTTGTAACAAGgaaaaaactgaatttctgtGCACTTCTGACTCCGTCCG
TACTCTGAAATCGCTGAACAGTGTCAATATCAAAAGAGTAAATGATTTTA
AATACCTTGGCTCGCACATTAATGATTCTGAACAAGACTTTAATATTAGA
A
Run BLAST on NCBI

protein sequence of TCONS_00009887-protein

>TCONS_00009887-protein ID=TCONS_00009887-protein|Name=TCONS_00009887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
PDKIILAIRALYTSTKAKVISPDGDTEMFDTHAGVLQGDTLAPFLFILVL
DYVLRISIDPLNYKGIQLTAQKSRRNPATFLTDLDFADDLALVSETIQFA
ENLLHSLENAASQVGLFCNKEKTEFLCTSDSVRTLKSLNSVNIKRVNDFK
YLGSHINDSEQDFNIR
Run BLAST on NCBI

transcript from alignment at sc0000099:545570..546070

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009887 ID=TCONS_00009887|Name=TCONS_00009887|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at sc0000099:545570..546070 (Clytia hemisphaerica)
TTCTAATATTAAAGTCTTGTTCAGAATCATTAATGTGCGAGCCAAGGTAT
TTAAAATCATTTACTCTTTTGATATTGACACTGTTCAGCGATTTCAGAGT
ACGGACGGAGTCAGAAGTGCacagaaattcagttttttcCTTGTTACAAA
AAAGGCCGACCTGACTAGCGGCATTCTCGAGAGAGTGGAGAAGGTTTTCT
GCGAACTGAATGGTCTCAGAGACAAGGGCGAGATCATCGGCAAAGTCTAG
ATCGGTGAGAAAAGTGGCGGGATTTCTTCTACTTTTTTGGGCTGTAAGTT
GGATGCCCTTGTAGTTTAAAGGATCAATAGAAATACGAAGAACGTAGTCT
AAAACTAGAATAAAAAGAAAGGGTGCAAGGGTGTCTCCTTGAAGAACACC
AGCATGGGTGTCAAACATTTCAGTGTCCCCGTCAGGAGAGATAACTTTTG
CCTTGGTAGAGGTGTAGAGCGCCCTGATGGCAAGAATAATTTTGTCAGGA
A

Coding sequence (CDS) from alignment at sc0000099:545570..546070

>TCONS_00009887 ID=TCONS_00009887|Name=TCONS_00009887|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0000099:545570..546070 (Clytia hemisphaerica)
TCTAATATTAAAGTCTTGTTCAGAATCATTAATGTGCGAGCCAAGGTATT
TAAAATCATTTACTCTTTTGATATTGACACTGTTCAGCGATTTCAGAGTA
CGGACGGAGTCAGAAGTGCacagaaattcagttttttcCTTGTTACAAAA
AAGGCCGACCTGACTAGCGGCATTCTCGAGAGAGTGGAGAAGGTTTTCTG
CGAACTGAATGGTCTCAGAGACAAGGGCGAGATCATCGGCAAAGTCTAGA
TCGGTGAGAAAAGTGGCGGGATTTCTTCTACTTTTTTGGGCTGTAAGTTG
GATGCCCTTGTAGTTTAAAGGATCAATAGAAATACGAAGAACGTAGTCTA
AAACTAGAATAAAAAGAAAGGGTGCAAGGGTGTCTCCTTGAAGAACACCA
GCATGGGTGTCAAACATTTCAGTGTCCCCGTCAGGAGAGATAACTTTTGC
CTTGGTAGAGGTGTAGAGCGCCCTGATGGCAAGAATAATTTTGTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005541XLOC_005541Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009887-proteinTCONS_00009887-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009887-exon-sc0000099-1491911889:545570..546070TCONS_00009887-exon-sc0000099-1491911889:545570..546070Clytia hemisphaericaexon
TCONS_00009887-exon-sc0000099-1510915933:545570..546070TCONS_00009887-exon-sc0000099-1510915933:545570..546070Clytia hemisphaericaexon
TCONS_00009887-exon-sc0000099-1575043694:545570..546070TCONS_00009887-exon-sc0000099-1575043694:545570..546070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:545570..546070 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.45799	2.01417	3.16405	4.97977	1.14694	1.68318	1.09344	2.48605	0.921465	1.64866	1.47714	1.13285	1.21208	2.85318	1.5868	1.40672	1.55055	2.0567	0.904094	1.08122	1.87956	1.37517	0.975159	0.633258	1.56538	1.16422	1.49939	1.60019	0.539418	0.686977
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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