TCONS_00009886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009886
Unique NameTCONS_00009886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009886 ID=TCONS_00009886|Name=TCONS_00009886|organism=Clytia hemisphaerica|type=transcript|length=583bp
NNGGCATGAAAACTTTTTGTgtgcatatttttattcacatagACTAGATG
ACAATGAGCAATGAGCTGGCTTCTTGACCGAAGGAAGGCTGTTATGAGTG
GCGCGCGGGCGGGTGTCAGGTGAGAATGTGCGTCTCCAGAAGTTAggtcc
agttcattataatgcacatttccatctctgttacatcatgttgtgcttgg
aaatatctcagttACATTTAAATCCACTACAAAACATCATGTGAGCCACC
AAAAAGCACACACCGCCTCTCACCGCCTATgctcctcaaaacaaaatggc
ggcaacttaaatgtttttcgcAGAAATCCAGCAACACAACCAATGTAGAG
CAACTTTATAGATTCTGTAGAGTCCTTTCTTCatttaaataaatcatttc
aatcaaagagattaagttttgatctaaaacTTGCCAAGAAATCTGCAGAA
TCATGCTTACAGCTTGCTTTTCAGCTGGCTTTGATGTGTTACACTACTGc
agctaccatctttaatttcaaggattacgtaatgccacggaaaataatat
tttgacgctcgaaaagggcgtaaaaagagcttN
Run BLAST on NCBI

transcript from alignment at sc0000099:518025..518607

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009886 ID=TCONS_00009886|Name=TCONS_00009886|organism=Clytia hemisphaerica|type=transcript|length=583bp|location=Sequence derived from alignment at sc0000099:518025..518607 (Clytia hemisphaerica)
Naagctctttttacgcccttttcgagcgtcaaaatattattttccgtggc
attacgtaatccttgaaattaaagatggtagctgCAGTAGTGTAACACAT
CAAAGCCAGCTGAAAAGCAAGCTGTAAGCATGATTCTGCAGATTTCTTGG
CAAgttttagatcaaaacttaatctctttgattgaaatgatttatttaaa
tGAAGAAAGGACTCTACAGAATCTATAAAGTTGCTCTACATTGGTTGTGT
TGCTGGATTTCTgcgaaaaacatttaagttgccgccattttgttttgagg
agcATAGGCGGTGAGAGGCGGTGTGTGCTTTTTGGTGGCTCACATGATGT
TTTGTAGTGGATTTAAATGTaactgagatatttccaagcacaacatgatg
taacagagatggaaatgtgcattataatgaactggaccTAACTTCTGGAG
ACGCACATTCTCACCTGACACCCGCCCGCGCGCCACTCATAACAGCCTTC
CTTCGGTCAAGAAGCCAGCTCATTGCTCATTGTCATCTAGTctatgtgaa
taaaaatatgcacACAAAAAGTTTTCATGCCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005540XLOC_005540Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009886-exon-sc0000099-1491911889:518025..518607TCONS_00009886-exon-sc0000099-1491911889:518025..518607Clytia hemisphaericaexon
TCONS_00009886-exon-sc0000099-1510915933:518025..518607TCONS_00009886-exon-sc0000099-1510915933:518025..518607Clytia hemisphaericaexon
TCONS_00009886-exon-sc0000099-1575043694:518025..518607TCONS_00009886-exon-sc0000099-1575043694:518025..518607Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:518025..518607 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.80063	3.92726	2.89128	0.831614	30.1472	25.194	29.4535	34.348	11.7722	23.987	28.1026	12.7895	15.4476	15.2084	7.76679	14.8131	9.76224	8.02823	10.3385	17.3726	13.0586	12.5383	8.50553	12.1372	16.7526	20.9116	28.0974	18.2101	37.3179	28.4167
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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