TCONS_00009884 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009884
Unique NameTCONS_00009884
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009884 ID=TCONS_00009884|Name=TCONS_00009884|organism=Clytia hemisphaerica|type=transcript|length=628bp
TAAAACTTTGTGACAAATTCAATCTTGGTTCCAACGACTGTCCTTTTAGT
ATCTCCTTCATGCCACGATGCTCTCATCTTATTCTTCTTATCAAAATTTC
CTTTATAATTTCCGTAGTAAAAACTCTTATCAAATCTGCGATCTGACCTT
CTTGCATCTTTATCTCCATAATAATATTGTTTATCTCCATAATAGTTTTG
ATTATCTCCATAATATTGTCCTGGTGTGTCACTGTGACTTCTGTAATGTG
AGATGTTCTCTCCAGAATAAAACGGATAATTGTCAATTTTGGCTGACGTC
GACTTTTTCAATGATCCTTTGCTAAAAAGTCGAGTTAAGGAGGGTTTTCG
ATCCTGATACATATCCACGAAAACGTTTTCACTATCGATGTTACTCGAAC
TACTCGATAAATATCGAGGAGGACTCGATTTGAAACTTAATCGATTCGAA
TGTGTCGAAGGTTTGAGTTTTGATTTCGGTGTCAATTCGAACATGTCACG
ATAAATTTGTGTAAGGCTCGCGTAACAAGAGTCTGTGACATGTTTCGGTA
GCAAAACGTCAATTTCAGCCGGCATCgtgattgttgatttttttcaatat
tgtgGTTtgttttttatcgattttttgc
Run BLAST on NCBI

protein sequence of TCONS_00009884-protein

>TCONS_00009884-protein ID=TCONS_00009884-protein|Name=TCONS_00009884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MPAEIDVLLPKHVTDSCYASLTQIYRDMFELTPKSKLKPSTHSNRLSFKS
SPPRYLSSSSSNIDSENVFVDMYQDRKPSLTRLFSKGSLKKSTSAKIDNY
PFYSGENISHYRSHSDTPGQYYGDNQNYYGDKQYYYGDKDARRSDRRFDK
SFYYGNYKGNFDKKNKMRASWHEGDTKRTVVGTKIEFVTKF
Run BLAST on NCBI

transcript from alignment at sc0000099:496006..496633

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009884 ID=TCONS_00009884|Name=TCONS_00009884|organism=Clytia hemisphaerica|type=transcript|length=628bp|location=Sequence derived from alignment at sc0000099:496006..496633 (Clytia hemisphaerica)
gcaaaaaatcgataaaaaacaAACcacaatattgaaaaaaatcaacaatc
acGATGCCGGCTGAAATTGACGTTTTGCTACCGAAACATGTCACAGACTC
TTGTTACGCGAGCCTTACACAAATTTATCGTGACATGTTCGAATTGACAC
CGAAATCAAAACTCAAACCTTCGACACATTCGAATCGATTAAGTTTCAAA
TCGAGTCCTCCTCGATATTTATCGAGTAGTTCGAGTAACATCGATAGTGA
AAACGTTTTCGTGGATATGTATCAGGATCGAAAACCCTCCTTAACTCGAC
TTTTTAGCAAAGGATCATTGAAAAAGTCGACGTCAGCCAAAATTGACAAT
TATCCGTTTTATTCTGGAGAGAACATCTCACATTACAGAAGTCACAGTGA
CACACCAGGACAATATTATGGAGATAATCAAAACTATTATGGAGATAAAC
AATATTATTATGGAGATAAAGATGCAAGAAGGTCAGATCGCAGATTTGAT
AAGAGTTTTTACTACGGAAATTATAAAGGAAATTTTGATAAGAAGAATAA
GATGAGAGCATCGTGGCATGAAGGAGATACTAAAAGGACAGTCGTTGGAA
CCAAGATTGAATTTGTCACAAAGTTTTA

Coding sequence (CDS) from alignment at sc0000099:496006..496633

>TCONS_00009884 ID=TCONS_00009884|Name=TCONS_00009884|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000099:496006..496633 (Clytia hemisphaerica)
ATGCCGGCTGAAATTGACGTTTTGCTACCGAAACATGTCACAGACTCTTG
TTACGCGAGCCTTACACAAATTTATCGTGACATGTTCGAATTGACACCGA
AATCAAAACTCAAACCTTCGACACATTCGAATCGATTAAGTTTCAAATCG
AGTCCTCCTCGATATTTATCGAGTAGTTCGAGTAACATCGATAGTGAAAA
CGTTTTCGTGGATATGTATCAGGATCGAAAACCCTCCTTAACTCGACTTT
TTAGCAAAGGATCATTGAAAAAGTCGACGTCAGCCAAAATTGACAATTAT
CCGTTTTATTCTGGAGAGAACATCTCACATTACAGAAGTCACAGTGACAC
ACCAGGACAATATTATGGAGATAATCAAAACTATTATGGAGATAAACAAT
ATTATTATGGAGATAAAGATGCAAGAAGGTCAGATCGCAGATTTGATAAG
AGTTTTTACTACGGAAATTATAAAGGAAATTTTGATAAGAAGAATAAGAT
GAGAGCATCGTGGCATGAAGGAGATACTAAAAGGACAGTCGTTGGAACCA
AGATTGAATTTGTCACAAAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005538XLOC_005538Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009884-proteinTCONS_00009884-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009884-exon-sc0000099-1491911889:496006..496633TCONS_00009884-exon-sc0000099-1491911889:496006..496633Clytia hemisphaericaexon
TCONS_00009884-exon-sc0000099-1510915933:496006..496633TCONS_00009884-exon-sc0000099-1510915933:496006..496633Clytia hemisphaericaexon
TCONS_00009884-exon-sc0000099-1575043694:496006..496633TCONS_00009884-exon-sc0000099-1575043694:496006..496633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:496006..496633 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.33869	0.0825689	0	0	2.28371	1.173	1.52404	1.01913	2.92542	6.8937	5.66178	8.17675	50.2875	27.0185	3.94254	5.00491	3.1146	13.6816	49.2347	115.191	14.5722	15.0941	4.36877	8.56153	14.2727	10.7908	18.3442	11.8952	10.3378	6.70254
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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