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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009882 ID=TCONS_00009882|Name=TCONS_00009882|organism=Clytia hemisphaerica|type=transcript|length=2609bp
AAATCgcggtttaacttttatttgataagcgccacatacagtattcgaat
ggctgggtggccgccctccgctaactgagtctactttgctaatagCCACG
TGACGTCATGTTCATAATGGCCATCGCATGTCCCTGTTCAAGTCGACAct
ctaactgaaagctgacatgatgaaatatttttacctccctccctccctgc
agttatggttgtaggcgatcctcacttatttatactaatattgtaTTTAT
CGGGACAAATTATCCCCAAAACTTActattcgaggattagccataaattt
atgccaaacttatatctaccgactcacacttacttctcaGCCGTCCGACT
ACTTGAATGGTTTATANNttcacttttttgacttttcacttttctttgac
ccgagtttgtgaaaaaaccgacccttagagagactgattttgacttttgt
tgttttggtaacccttagagagactgattttgacttttgttgttttggta
acccttagagagactttgggagggtgaaaaaccttacccttaaggcacgc
acatacccagcacccatttttgcctaagtacccccccgggaatagaactc
aaagcacacaataaagtatacatatatatatttgtccagaaagaactggc
atgttgtttgctttgttttggtNCGGGCCCTGTTCAAGTCGACActctaa
ctgaaagctgacatgatgaaatatttttattgaatcTTCCGATATCTCTT
GGGGTTAATTCATAACCATCACTTTTACCGAACGCAAAGAGAGTTTGAGG
ATGGACATTCATAGATGCAAAAGTAGTTTGTGCAATGAAGCGTACAATTT
TTGTTGTATACGAACGAAAGGAGACCAgattctttcaaaaactttatgaa
acGGACCATTAAGATTTTATCAAGTGCATAACAAAATCTGCAACTAATAT
CTGGCTTGGGCGATTGTTGCTGGTTTTTTggagatgttggccaaggtgat
tgtcGGTGGTTTTTTgggatgttggccaaggtgattgtcGGTGGTTTTTG
GGTatgttggccaaggtgattgtcGGTGGTTTTGGGGATGTTGGCCAATG
TGATTGTCGCTGGTCGTTTGGGGATTGTCGCTGGAGATTTGGGGTCATTG
AGGCTGTAATAGCTTATTGTATTGTCTTTAGCTATCATACTATCATAAGG
CTTGGTTGCTTGGAGCGAGGTGGAAGAAGAAAACTTGCAATATGATTGTC
ATGAACTCTAcaagattttgattgtttgcGTATTGGATTGAATTTGGTTT
AACATGTTTTCTTTTGGAATTAGGTTTTCGGTGTTGCGCAAGGGACtcgc
aaaaaagtttttattatcattttggCCTGTTGaagatgaaatcaaaacaa
aaaataaaaacaccataaaaacacaaatttttctCTACGAAACGTAACat
caattatttcaaaattctctctttttgcttataaaatttCTTAGCTCAAA
CAAAAGGCCCATTCGCTTAATCTAGGTTACTCTTCTAAGGCACAGctgct
cttttttataagatttaatATTTGCAGTGAATTGTGAATTCTTTGTCTTG
GACAGCGCTTACGCTTATAAAACACGATAAAGAAGAGAACaaatcttttt
acttttttacttcaGATAGTACaaacaaatttttcaacttttataagcat
aaactTATCCTCGACTGGATGTAATAATCAAACACAAAACCTGaatattt
ttattgtatttcacGTTACCAAAAATCTGCAACCCggttaattgaaaaat
ttttacagtacaGTGATCTTCTTGGCTTGAAGGCTGGTGTCAACCTAGGC
AAGGTTGTACACGGACAGTGCACGTCAAATTAGAGCCGGTTTCTACGGCA
TTTATATTAATTTAGATATTGGATTACACAACTATATACGGAAGTTCTCT
GTCAGTCGACTGACAAAAGTTAATTTGGAGAAGGCTATGTATCCTAGTTA
CAGTGAGCGGCGAGTTGAGAATTATCCGGTTTTAGATAGAAGCATAAAGA
AGGATCGTGATCAGTACATAATAAACAATCGGCATTGATTAGATGCTTTA
CATAGCCTGTTCACAAGGCTGTATGGACGGCTCATGCTGTAGACCAGAGG
CAAGTTAAAATGCATATTAAGTATTTCATATCGTTTTCGATATATTTAgg
tataatatctaaatagtttataaaataatattttattttctattataTGT
TTTTTGTTACTTTATTGTTCCTAGGGTGTGTATGTTTTTATCGAGTCCTT
GTCGCAAGTAGAGCATCAGTTGTATAGATGGTCAAATCTTGGGAAGAAGG
CAAGACTTTTGAAGTTATCAGGAAATCACTTTTGACACCATACTTGGCTA
GTAAAAAGATCCTGCTTGGAGTTTCTGTAAAGGAGGCACTACTAATAACA
CGTTTTACGAAGTTACCAATGGCTAGAATTGATAGTATTATGCAGCTTTG
GGGATCCAATCATTCCGTTTTCCCTTTCAATAAAGGGCCCGTTATTGCGG
GGTGTGTCCTCAGTGACCTCCTCCGTGGCCGGGACTGTGGGTAGGCTGGG
CTGGCCCGN Run BLAST on NCBI protein sequence of TCONS_00009882-protein >TCONS_00009882-protein ID=TCONS_00009882-protein|Name=TCONS_00009882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MIAKDNTISYYSLNDPKSPATIPKRPATITLANIPKTTDNHLGQHTQKPP
TITLANIPKNHRQSPWPTSPKNQQQSPKPDISCRFCYALDKILMVRFIKF
LKESGLLSFVYNKNCTLHCTNYFCIYECPSSNSLCVR Run BLAST on NCBI transcript from alignment at sc0000099:483169..485777 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009882 ID=TCONS_00009882|Name=TCONS_00009882|organism=Clytia hemisphaerica|type=transcript|length=2609bp|location=Sequence derived from alignment at sc0000099:483169..485777 (Clytia hemisphaerica)
NCGGGCCAGCCCAGCCTACCCACAGTCCCGGCCACGGAGGAGGTCACTGA
GGACACACCCCGCAATAACGGGCCCTTTATTGAAAGGGAAAACGGAATGA
TTGGATCCCCAAAGCTGCATAATACTATCAATTCTAGCCATTGGTAACTT
CGTAAAACGTGTTATTAGTAGTGCCTCCTTTACAGAAACTCCAAGCAGGA
TCTTTTTACTAGCCAAGTATGGTGTCAAAAGTGATTTCCTGATAACTTCA
AAAGTCTTGCCTTCTTCCCAAGATTTGACCATCTATACAACTGATGCTCT
ACTTGCGACAAGGACTCGATAAAAACATACACACCCTAGGAACAATAAAG
TAACAAAAAACAtataatagaaaataaaatattattttataaactattta
gatattataccTAAATATATCGAAAACGATATGAAATACTTAATATGCAT
TTTAACTTGCCTCTGGTCTACAGCATGAGCCGTCCATACAGCCTTGTGAA
CAGGCTATGTAAAGCATCTAATCAATGCCGATTGTTTATTATGTACTGAT
CACGATCCTTCTTTATGCTTCTATCTAAAACCGGATAATTCTCAACTCGC
CGCTCACTGTAACTAGGATACATAGCCTTCTCCAAATTAACTTTTGTCAG
TCGACTGACAGAGAACTTCCGTATATAGTTGTGTAATCCAATATCTAAAT
TAATATAAATGCCGTAGAAACCGGCTCTAATTTGACGTGCACTGTCCGTG
TACAACCTTGCCTAGGTTGACACCAGCCTTCAAGCCAAGAAGATCACtgt
actgtaaaaatttttcaattaaccGGGTTGCAGATTTTTGGTAACgtgaa
atacaataaaaatattCAGGTTTTGTGTTTGATTATTACATCCAGTCGAG
GATAagtttatgcttataaaagttgaaaaatttgtttGTACTATCtgaag
taaaaaagtaaaaagatttGTTCTCTTCTTTATCGTGTTTTATAAGCGTA
AGCGCTGTCCAAGACAAAGAATTCACAATTCACTGCAAATattaaatctt
ataaaaaagagcagCTGTGCCTTAGAAGAGTAACCTAGATTAAGCGAATG
GGCCTTTTGTTTGAGCTAAGaaattttataagcaaaaagagagaattttg
aaataattgatGTTACGTTTCGTAGagaaaaatttgtgtttttatggtgt
ttttattttttgttttgatttcatcttCAACAGGccaaaatgataataaa
aacttttttgcgaGTCCCTTGCGCAACACCGAAAACCTAATTCCAAAAGA
AAACATGTTAAACCAAATTCAATCCAATACgcaaacaatcaaaatcttgT
AGAGTTCATGACAATCATATTGCAAGTTTTCTTCTTCCACCTCGCTCCAA
GCAACCAAGCCTTATGATAGTATGATAGCTAAAGACAATACAATAAGCTA
TTACAGCCTCAATGACCCCAAATCTCCAGCGACAATCCCCAAACGACCAG
CGACAATCACATTGGCCAACATCCCCAAAACCACCgacaatcaccttggc
caacatACCCAAAAACCACCgacaatcaccttggccaacatcccAAAAAA
CCACCgacaatcaccttggccaacatctccAAAAAACCAGCAACAATCGC
CCAAGCCAGATATTAGTTGCAGATTTTGTTATGCACTTGATAAAATCTTA
ATGGTCCgtttcataaagtttttgaaagaatcTGGTCTCCTTTCGTTCGT
ATACAACAAAAATTGTACGCTTCATTGCACAAACTACTTTTGCATCTATG
AATGTCCATCCTCAAACTCTCTTTGCGTTCGGTAAAAGTGATGGTTATGA
ATTAACCCCAAGAGATATCGGAAgattcaataaaaatatttcatcatgtc
agctttcagttagagTGTCGACTTGAACAGGGCCCGNaccaaaacaaagc
aaacaacatgccagttctttctggacaaatatatatatgtatactttatt
gtgtgctttgagttctattcccgggggggtacttaggcaaaaatgggtgc
tgggtatgtgcgtgccttaagggtaaggtttttcaccctcccaaagtctc
tctaagggttaccaaaacaacaaaagtcaaaatcagtctctctaagggtt
accaaaacaacaaaagtcaaaatcagtctctctaagggtcggttttttca
caaactcgggtcaaagaaaagtgaaaagtcaaaaaagtgaaNNTATAAAC
CATTCAAGTAGTCGGACGGCtgagaagtaagtgtgagtcggtagatataa
gtttggcataaatttatggctaatcctcgaatagTAAGTTTTGGGGATAA
TTTGTCCCGATAAAtacaatattagtataaataagtgaggatcgcctaca
accataactgcagggagggagggaggtaaaaatatttcatcatgtcagct
ttcagttagagTGTCGACTTGAACAGGGACATGCGATGGCCATTATGAAC
ATGACGTCACGTGGctattagcaaagtagactcagttagcggagggcggc
cacccagccattcgaatactgtatgtggcgcttatcaaataaaagttaaa
ccgcGATTT Coding sequence (CDS) from alignment at sc0000099:483169..485777 >TCONS_00009882 ID=TCONS_00009882|Name=TCONS_00009882|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000099:483169..485777 (Clytia hemisphaerica)
ATGATAGCTAAAGACAATACAATAAGCTATTACAGCCTCAATGACCCCAA
ATCTCCAGCGACAATCCCCAAACGACCAGCGACAATCACATTGGCCAACA
TCCCCAAAACCACCgacaatcaccttggccaacatACCCAAAAACCACCg
acaatcaccttggccaacatcccAAAAAACCACCgacaatcaccttggcc
aacatctccAAAAAACCAGCAACAATCGCCCAAGCCAGATATTAGTTGCA
GATTTTGTTATGCACTTGATAAAATCTTAATGGTCCgtttcataaagttt
ttgaaagaatcTGGTCTCCTTTCGTTCGTATACAACAAAAATTGTACGCT
TCATTGCACAAACTACTTTTGCATCTATGAATGTCCATCCTCAAACTCTC
TTTGCGTTCGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009882-exon-sc0000099-1491911889:483169..485777 | TCONS_00009882-exon-sc0000099-1491911889:483169..485777 | Clytia hemisphaerica | exon |
| TCONS_00009882-exon-sc0000099-1510915933:483169..485777 | TCONS_00009882-exon-sc0000099-1510915933:483169..485777 | Clytia hemisphaerica | exon |
| TCONS_00009882-exon-sc0000099-1575043694:483169..485777 | TCONS_00009882-exon-sc0000099-1575043694:483169..485777 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:483169..485777 . |
Blast
The following BLAST results are available for this feature:
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