TCONS_00009875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009875
Unique NameTCONS_00009875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009875 ID=TCONS_00009875|Name=TCONS_00009875|organism=Clytia hemisphaerica|type=transcript|length=444bp
ACAATGTCCTTGTTGTAGTGACTTTCGTAAGCGTACCAACAGCGCAGCGG
GTGACAGAGGGCACGAAGTGAGATCGCTTTTAGATTTCGATTAGCCCCTA
TCTGGATGAAAACCTGTCGTTCTCTTTATGGCCAAACAGAAGttcttttg
cttttttcgaTCAGGCGATGCCATGGATTAATTCTCTGCCCGCTTCAGGA
AACTTTTATTCGTTTTCCTACatttcgtttgttcgttcgacTGCGTTGGA
TGGTAATATAGAATAACAAGTTTCGGTATTTTATCGTATCATGTCGTTTC
AAAACGCTCAGGGTCTTTTCTGCAGTATCATGGCCATGGTAACTTGCATA
TTGGGTACGCTTCCTTTGTCTTCTGTTtgaccaacgatgtaaaaataata
gataaccaacttgccttgattctcaaaaaacatccgtgttacgg
Run BLAST on NCBI

transcript from alignment at sc0000099:391270..391713

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009875 ID=TCONS_00009875|Name=TCONS_00009875|organism=Clytia hemisphaerica|type=transcript|length=444bp|location=Sequence derived from alignment at sc0000099:391270..391713 (Clytia hemisphaerica)
ccgtaacacggatgttttttgagaatcaaggcaagttggttatctattat
ttttacatcgttggtcaAACAGAAGACAAAGGAAGCGTACCCAATATGCA
AGTTACCATGGCCATGATACTGCAGAAAAGACCCTGAGCGTTTTGAAACG
ACATGATACGATAAAATACCGAAACTTGTTATTCTATATTACCATCCAAC
GCAgtcgaacgaacaaacgaaatGTAGGAAAACGAATAAAAGTTTCCTGA
AGCGGGCAGAGAATTAATCCATGGCATCGCCTGAtcgaaaaaagcaaaag
aaCTTCTGTTTGGCCATAAAGAGAACGACAGGTTTTCATCCAGATAGGGG
CTAATCGAAATCTAAAAGCGATCTCACTTCGTGCCCTCTGTCACCCGCTG
CGCTGTTGGTACGCTTACGAAAGTCACTACAACAAGGACATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005529XLOC_005529Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009875-exon-sc0000099-1491911889:391270..391713TCONS_00009875-exon-sc0000099-1491911889:391270..391713Clytia hemisphaericaexon
TCONS_00009875-exon-sc0000099-1510915933:391270..391713TCONS_00009875-exon-sc0000099-1510915933:391270..391713Clytia hemisphaericaexon
TCONS_00009875-exon-sc0000099-1575043694:391270..391713TCONS_00009875-exon-sc0000099-1575043694:391270..391713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:391270..391713 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.912586	0.595233	0.516324	1.5108	0	0.160952	0	0	0.131776	0	0.505326	0.105147	0.321609	0.208623	0.0873068	0	0.226801	0.116186	0	0	0.30176	0	0.887485	0.801408	0.330503	0	0.503465	0.314996	1.38391	1.33244
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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