TCONS_00009872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009872
Unique NameTCONS_00009872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009872 ID=TCONS_00009872|Name=TCONS_00009872|organism=Clytia hemisphaerica|type=transcript|length=668bp
AAAAAACCTCTCGTGGAAAGATCATGATTCAAATACTACTACTAAAGCAG
ACTCAACACgtattttccttcaaagaaaCCTGCCCATGACAGACTCTTAA
ACTCGACTCATTTGTTGCAAAACTTATGTGAGACCTCTATGGGAGTACGC
ATCTTCAGTTTGGGACTCACCTGGCATAAAATCTCAGTCAACTCAGTTAG
AAAGTGTCCAGCCTAAATCTCTTCGATGGATTTATAACAGATGGGACACC
TGAGGACACAGAATATTCCCCTACTGCTCTCATGAAAACTGCaaatatag
aaaatgaatacctAACCTTAGATAATGAAAAACAATCAATCGTTTAAATT
AAAGGCTTTTCATAATATTCACCATGGACTGAACTATGTTGACAAATCCA
TCCTACCAACAAGGCAGAGATGTAAGAATATAAAATTCAAACAAATGCTT
GGGTCTATACAGTCATATGCAATGTCATTCTTCTCATATGTAGATAAGTT
CTGGAATctcgagtgacttagggcaagtctcaaaaacctaacagtttacc
ctaagtttttgGATCAATAGCAGCCAaattcagagatccacttagggctc
taaagtacctctataccttGAAGTTTATGACATTGTGACATGTTTATCAG
GTTGTGACCTAATTAAAC
Run BLAST on NCBI

transcript from alignment at sc0000099:316172..316839

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009872 ID=TCONS_00009872|Name=TCONS_00009872|organism=Clytia hemisphaerica|type=transcript|length=668bp|location=Sequence derived from alignment at sc0000099:316172..316839 (Clytia hemisphaerica)
GTTTAATTAGGTCACAACCTGATAAACATGTCACAATGTCATAAACTTCa
aggtatagaggtactttagagccctaagtggatctctgaattTGGCTGCT
ATTGATCcaaaaacttagggtaaactgttaggtttttgagacttgcccta
agtcactcgagATTCCAGAACTTATCTACATATGAGAAGAATGACATTGC
ATATGACTGTATAGACCCAAGCATTTGTTTGAATTTTATATTCTTACATC
TCTGCCTTGTTGGTAGGATGGATTTGTCAACATAGTTCAGTCCATGGTGA
ATATTATGAAAAGCCTTTAATTTAAACGATTGATTGTTTTTCATTATCTA
AGGTTaggtattcattttctatatttGCAGTTTTCATGAGAGCAGTAGGG
GAATATTCTGTGTCCTCAGGTGTCCCATCTGTTATAAATCCATCGAAGAG
ATTTAGGCTGGACACTTTCTAACTGAGTTGACTGAGATTTTATGCCAGGT
GAGTCCCAAACTGAAGATGCGTACTCCCATAGAGGTCTCACATAAGTTTT
GCAACAAATGAGTCGAGTTTAAGAGTCTGTCATGGGCAGGtttctttgaa
ggaaaatacGTGTTGAGTCTGCTTTAGTAGTAGTATTTGAATCATGATCT
TTCCACGAGAGGTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005526XLOC_005526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009872-exon-sc0000099-1491911889:316172..316839TCONS_00009872-exon-sc0000099-1491911889:316172..316839Clytia hemisphaericaexon
TCONS_00009872-exon-sc0000099-1510915933:316172..316839TCONS_00009872-exon-sc0000099-1510915933:316172..316839Clytia hemisphaericaexon
TCONS_00009872-exon-sc0000099-1575043694:316172..316839TCONS_00009872-exon-sc0000099-1575043694:316172..316839Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:316172..316839 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.154587	0.22612	0.175031	0.256861	0.830978	0	0.0993731	0.198432	0.214183	0.439638	1.17463	0.387413	0.999627	2.08202	0.672531	0.527245	0.593862	0.658967	0	0.185817	0.954046	0.139635	1.692	1.5651	0.0859698	0.148127	1.46764	1.58369	8.8727	7.59005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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