TCONS_00009862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009862
Unique NameTCONS_00009862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009862 ID=TCONS_00009862|Name=TCONS_00009862|organism=Clytia hemisphaerica|type=transcript|length=496bp
GTTGCTTAAAAAATTGTTGTTCGAAGTGGATGCTATAAAAGAGGAGGTAA
ATTGTTCAGGGCTTTTTCACCCAGGGGTATATACTAGGGTTGGCGGATGA
GGGGTATGTGCGAACCAGACCAGCCCTTAATAAAGAGACCAAATTTTAGT
GAAAGGGTGACCCTTTGAGAGTCTTTATTGGAGAATTTTCTTCCAAATTT
CGAGAAATTTCCTACCCTTAGAGAGACTTTTTCACAATTTTTTCTGTCAA
AATTAAAAATTTTTCCAAAAATTCGTCAGTTTTCCAACCCTTAGAGGGAT
TACTTTAAAATTTTCTGATTTTTGTAACCCTTAAAGAGACTTTGGAAGGT
GAAAAAGCTGACCTTTAAATTAACCCTATTTGCCCTGTGCCTTTATGACC
TTGTCATGCCCCCTTAAATTCTCCTGATAGGGTGTTCCAAATTTCATGAA
ACTTTGCACATACAAGCCCCATTATATAAAGAACAAATTCAAGGAA
Run BLAST on NCBI

transcript from alignment at sc0000099:44092..44587

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009862 ID=TCONS_00009862|Name=TCONS_00009862|organism=Clytia hemisphaerica|type=transcript|length=496bp|location=Sequence derived from alignment at sc0000099:44092..44587 (Clytia hemisphaerica)
TTCCTTGAATTTGTTCTTTATATAATGGGGCTTGTATGTGCAAAGTTTCA
TGAAATTTGGAACACCCTATCAGGAGAATTTAAGGGGGCATGACAAGGTC
ATAAAGGCACAGGGCAAATAGGGTTAATTTAAAGGTCAGCTTTTTCACCT
TCCAAAGTCTCTTTAAGGGTTACAAAAATCAGAAAATTTTAAAGTAATCC
CTCTAAGGGTTGGAAAACTGACGAATTTTTGGAAAAATTTTTAATTTTGA
CAGAAAAAATTGTGAAAAAGTCTCTCTAAGGGTAGGAAATTTCTCGAAAT
TTGGAAGAAAATTCTCCAATAAAGACTCTCAAAGGGTCACCCTTTCACTA
AAATTTGGTCTCTTTATTAAGGGCTGGTCTGGTTCGCACATACCCCTCAT
CCGCCAACCCTAGTATATACCCCTGGGTGAAAAAGCCCTGAACAATTTAC
CTCCTCTTTTATAGCATCCACTTCGAACAACAATTTTTTAAGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005517XLOC_005517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009862-exon-sc0000099-1491911889:44092..44587TCONS_00009862-exon-sc0000099-1491911889:44092..44587Clytia hemisphaericaexon
TCONS_00009862-exon-sc0000099-1510915933:44092..44587TCONS_00009862-exon-sc0000099-1510915933:44092..44587Clytia hemisphaericaexon
TCONS_00009862-exon-sc0000099-1575043694:44092..44587TCONS_00009862-exon-sc0000099-1575043694:44092..44587Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:44092..44587 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.247232	0	0.279928	0.136933	0.333406	0.263462	0.317855	0.743931	0	0	0	0.0823275	0.082213	0	0.140386	0.225984	0	0.19023	0.394219	0.275015	0.119519	0.174891	0.141735	0.128858	1.32721	0.592251	0	0.180897	0	0.419367
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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