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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009861 ID=TCONS_00009861|Name=TCONS_00009861|organism=Clytia hemisphaerica|type=transcript|length=5458bpRun BLAST on NCBI protein sequence of TCONS_00009861-protein >TCONS_00009861-protein ID=TCONS_00009861-protein|Name=TCONS_00009861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1569bp MLTLVXSDEEQNDKKELFLSKSPDHLFQSQESKEKSGANIEDDVDISLLLRun BLAST on NCBI transcript from alignment at sc0000099:583290..604112- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009861 ID=TCONS_00009861|Name=TCONS_00009861|organism=Clytia hemisphaerica|type=transcript|length=20823bp|location=Sequence derived from alignment at sc0000099:583290..604112- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000099:583290..604112- >TCONS_00009861 ID=TCONS_00009861|Name=TCONS_00009861|organism=Clytia hemisphaerica|type=CDS|length=89490bp|location=Sequence derived from alignment at sc0000099:583290..604112- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009861 vs. Swiss-Prot (Human)
Match: ZFYV9 (Zinc finger FYVE domain-containing protein 9 OS=Homo sapiens GN=ZFYVE9 PE=1 SV=2) HSP 1 Score: 377.481 bits (968), Expect = 2.200e-107 Identity = 210/539 (38.96%), Postives = 312/539 (57.88%), Query Frame = 2
Query: 3602 LPPIIRRSN--EETRIVNNPDLDTLFSQIRDEQEDPITFIVNKNLVVRVKIVNLDCCVEKKCWCFTSDGMGASNQEEIVVLIKCGSYDVDDRTLTRKVLQQMNHIFEKAKHGHPVSDLEQLEYDASLCCTPKNVAMLFFKHSLQCIKKLIIPTSPYLFGMYIEKSELPWAKNFPLRLLLRVGAEYKYYPCPLLNILDRPAVYDGVGRTILDLLADFRNFQYTIPRVVGVTINLRGKDTIIRLPQHRYDEIMKAVNSCEENVLSLAGNFSTTCDGHLVAVEK-DGRYKTQTLSIVLKANRKVTCASFVVISAALKANQDGVKAKASIVEDGVMVQVTPEVMKEFKQAIKDMKXXXXXXXXXXXXXXXXXXXXXDEVSSKVGIEWSSADVMDRPRLLSPIDGTSFDNLTNMKIRHSYDYTSNNLTAKIHWIEVYFLPQDSDTVQRLSARELGQMTSSVAKACMSALSAHLMTLLALDMTRIGLRVNLAADFVEYKIGANLSTLPAELLPGLDDKLVPAIHTVMSSAQER-VAVELIFQVVK 5206
LPPI+ + + + P ++ Q+ D DP+ F++N NL+ VKIVN V +KCWCFT+ GM A Q EIV+L++C D++ L + + ++ A G+ VS+L + S + ++ L+ + Q ++ L++PT PYLFG+ I+K E PWAK FP+RL+LR+GAEY+ YPCPL ++ R ++ G TI++LLADFRN+QYT+P V G+ +++ + T I++P +RY+E+MKA+N E+VL+ F+ D HLV V+ DG Y+TQ +SI + RKVT ASF V S ALK++ G AK+SIVEDGVMVQ+T E M +QA+++MK + + +E + I+W D ++SPIDG S + +TN+KI H +Y +N I W EV+FL D + ++T VAKA AL HL L MT++GLRV L +D V Y+ G+N LP++ + LD LVP IH E V +ELIF +++
Sbjct: 904 LPPILISTGVKGDYAVEEKPSQISVMQQLEDGGPDPLVFVLNANLLSMVKIVNY---VNRKCWCFTTKGMHAVGQSEIVILLQCLP---DEKCLPKDIFNHFVQLYRDALAGNVVSNLGHSFFSQSFLGSKEHGGFLYVTSTYQSLQDLVLPTPPYLFGILIQKWETPWAKVFPIRLMLRLGAEYRLYPCPLFSVRFRKPLFGETGHTIMNLLADFRNYQYTLPVVQGLVVDMEVRKTSIKIPSNRYNEMMKAMNKSNEHVLAGGACFNEKADSHLVCVQNDDGNYQTQAISIHNQP-RKVTGASFFVFSGALKSSS-GYLAKSSIVEDGVMVQITAENMDSLRQALREMK----------DFTITCGKADAEEPQEHIHIQWVDDDKNVSKGVVSPIDGKSMETITNVKIFHGSEYKANGKV--IRWTEVFFLENDDQHNCLSDPADHSRLTEHVAKAFCLALCPHLKLLKEDGMTKLGLRVTLDSDQVGYQAGSNGQPLPSQYMNDLDSALVPVIHGGACQLSEGPVVMELIFYILE 1422 HSP 2 Score: 100.908 bits (250), Expect = 4.885e-21 Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 2
Query: 2879 LGWVAPEWVPDEKACNCMKCNMKFTVVKRRHHCRACGKVLCSVCCNMRYCLPYLNYKFVRVCQDCCDVMISQALSDNPIPDLTPAATSSSATQPPVVASPIPP 3187
LG VAP WVPD +A NCMKC +FT KRRHHCRACGKV C+ CC+++ L Y++ K RVC C V+++ +N ++ ++ S + P S IPP
Sbjct: 689 LGEVAPVWVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLLYMDRKEARVCVICHSVLMNAQAWENM---MSASSQSPNPNNPAEYCSTIPP 788 The following BLAST results are available for this feature:
BLAST of TCONS_00009861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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