TCONS_00009860 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009860
Unique Name	TCONS_00009860
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	390

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000099:513970..519971-

transcript sequence

>TCONS_00009860 ID=TCONS_00009860|Name=TCONS_00009860|organism=Clytia hemisphaerica|type=transcript|length=390bp
ATTTGGTTTGCCAGCATATGAAAACTTGTTcccaaaaaatcgtaaatttt
tCGTATGCGGTTGGCTCTGGTTGCTTCCAGAACCAGCTGAAAGCAACAGT
CACGTTCTGAGTCAGCATTGTAACCATGGTGATTACATAATCAATTGCAT
CTTGGCAATATTCTAAGATGGTAACCATAGTTGTCGGTTCAGGTTCTTGC
CAAAAACCATTGAATCTGGAAAAAAGAATGATAAAtcaattcaaatttct
ttaaaaaatcacaATAAAGAGAAGAAGTCGTGATTCAGAGTTTGAAGCTG
TGCAACAATTGGAGAGGGATTTATATTCTTAGAGACTTCAAAACCATTAC
CTAATATTCCTCAACAGACTTTGACTGTCGAATATTTTTC

Run BLAST on NCBI

transcript from alignment at sc0000099:513970..519971-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009860 ID=TCONS_00009860|Name=TCONS_00009860|organism=Clytia hemisphaerica|type=transcript|length=6002bp|location=Sequence derived from alignment at sc0000099:513970..519971- (Clytia hemisphaerica)
ATTTGGTTTGCCAGCATTTGAAGGTTCGTTGCAATACATATGAAAACTTG
TTCCCAAAAAATCGTAAATTTTTCGTATGCGGTTGGCTCTGGTTGCTTCC
AGAACCAGCTGAAAGCAACAGTCGCGTTTTGAGTCAGCATTGTAACCATG
GTGATTACATAATCAATTGCATCTTGGCAATATTCTAAGATGGTATCCAT
AGTTGTCGGTTCAGGTTCTTGCCAAAAACCATTGAATCTGGAAAAAAGAA
TGATAAATCAATTCAAATTTCTTTAAAAAATTACAATAAAGAGAAGAAGT
CGTGATTCAGAGTTTGAAGCTGTGCAACAATTGGAAAGAGATTTATATTC
TTAGAGACTTCAAAACCATTACCTAATATTCCTCAACAGACTTTGACTGT
CGAATATTTTTCCTAACAGGGACCAGCCTTATGATAAACTTTCAAGTGAA
GTGGGGGTCTTAAGGTGGTAGTCTACCGCCAGATTTCAAAAGTCAAAAAA
TCACATTTTTTGCAATAACTCAAGAACTTCTTTACATTTCGTAATGAAAT
TTTCAGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGCATGAAAACTTTTTGTGTGCATATTTTTATTC
ACATAGACTAGATGACAATGAGCAATGAGCTGGCTTCTTGACCGAAGGAA
GGCTGTTATGAGTGGCGCGCGGGCGGGTGTCAGGTGAGAATGTGCGTCTC
CAGAAGTTAGGTCCAGTTCATTATAATGCACATTTCCATCTCTGTTACAT
CATGTTGTGCTTGGAAATATCTCAGTTACATTTAAATCCACTACAAAACA
TCATGTGAGCCACCAAAAAGCACACACCGCCTCTCACCGCCTATGCTCCT
CAAAACAAAATGGCGGCAACTTAAATGTTTTTCGCAGAAATCCAGCAACA
CAACCAATGTAGAGCAACTTTATAGATTCTGTAGAGTCCTTTCTTCATTT
AAATAAATCATTTCAATCAAAGAGATTAAGTTTTGATCTAAAACTTGCCA
AGAAATCTGCAGAATCATGCTTACAGCTTGCTTTTCAGCTGGCTTTGATG
TGTTACACTACTGCAGCTACCATCTTTAATTTCAAGGATTACGTAATGCC
ACGGAAAATAATATTTTGACGCTCGAAAAGGGCGTAAAAAGAGCTTNTTT
TTGGGTAGACTACCACCTTAAAGGGTTTGTGACATGGAGGTTTAGTAAAC
AATCTAGACTTCCTGATCACCTTTTTCTCAGCTGTTGAGCCCTACATCCC
TGTTAAAAAAGAGGATTTAAATGTCGTTCTCTTGACAATGAAACCGTCGG
ATATTTCCTAAATGTATTAAATATTACATCTCTGTGTCACAGACCCGGTG
GGACCCCCTACCTCACTGCTAAATCTGGCTTAAGTTTTGTCCCCAGCAGA
AGTTGCCATTGAAGTTTTTGTTCTTGTAACAAAAGAATTTTTATTCCTGT
TGCGATGTGGATCAAGATTTTCAACCCCACTGTGAAAAGAAGTTCCACCG
GGGCTGTGAGACAGGGATGTAATATTAAAACGTATTCTAACTTTTTGAAT
ATTTCCCCGCTATAAGGGGAAATATTAGTTAAAAAGGCATTTCTCCGATC
CTTGGCTACTTACGCCCTTTTTGCGCCCTTAAAGGGGGCGGCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGGTTTTA
AGCACTTTCTGAATAGATTTTGTATGGCCAGTGAATAATGAATATGCCTG
AATATTGTGGGGGTGTTTTAGAGATGTCCATGATATGCTGTGTATGAAAC
GCTTGGCCAGACAATTTTTGCTTTATAAAATTCCAAGAAATTTAACATCA
ACTAATATCAAGAAAAGAAGTTTGGAAGTACTTCTAACTCTTATTGCGCA
CCCTTTTCTGAAGTTTCAGAATTCTGTAGACTAGCAAACTAGTCTGTTAA
TTCATCATGTCAGAGGGAGGGAACATAAGGGTGGTGGGTGTTGTTTGCTG
AAATAGGATTTGCGTAAGGGAACGAGAAAAAATATGTCAGTGATAGTTAC
CAATTACCTAGTAAGGTTTAGTACCTTCACAAAAATACCATTCTATGTTT
CAGATGTGCATTTTTTGTTAAATTTAGTTTCGATCCTAACCTAAGAATAC
CGTAAGAATATTTTAGGATGATTTTTTCCAAAAAGTTAAGAATATCCATG
ATGAAATGAAAAACACCATTCTTATAAAAAAACGAAAACGTGGGTGTCTT
ATTGGATTTAAAGTCAGTTAGGTACCCTAAAGTCAGTTAGGTAAAAATCA
TCGCATGACTATTCGTTTCTCTTGGATTGGAAATGTTTTACCAGAAATAA
GATTGACATATAAATTTTTATTTTTCTAGTCCTGTTTAGCTTTGGAGCTC
AATTTTTCAGTATAGGTTACAAAGGTTAAAGATCGACTATATGCAATGAA
AAGTTTTATTTTCATCAATTATCCATTAAAAGTGAAGTAAAAATGTAAAA
GGCTCTCCAGAGCTGAGATAATTCAATTTAAATTCTGAATATTGAGGGCG
TCTACGATTTGATTTTCAGTATGCAATTGAGATTTCTCAGATCTGGAAAG
CCGTCACAATCAACGTCGCGCAAAAAAAATTGAGCAGGACTGGTTTTCTT
AGGCTAAGATATTTCAATTTGAATTATGATCTAATGAGGGCGTTTTTGAA
ATACGATGCAATTGTCATTTTAGATTGTAAAAACTAAAGCATTCATACTT
TAAGATGGTGTTAATTTGTTAGAAATCAAATTGAAATACCCAAACTTTAA
AAAGCCAGTTCAAGCCAAAGAAAATATTGAAAAATAATGTTTTTCGATCA
ATGTCCGAAAAACATAACATACATTCAACCTTTGCAACTTTTGTAACCTA
TGCCTTTAAAAAGAGCTATAATCCTAAACAGGCAATTTTTATTACAAAGA
TATTAAAAAATATATATAAAAAAGTATATAAATGCATGAGTTGGTTGAGA
ATACGTGCTGTCCTTGGTTTAAACCACCATTTAGGCGGCTATTTGGTTTG
CCAGCATTTGAAGGTTCGTTGCAATACATATGAAAACTTGTTCCCAAAAA
ATCGTAAATTTTTCGTATGCGGTTGGCTCTGGTTGCTTCCAGAACCAGCT
GAAAGCAACAGTCACGTTCTGAGTCAGCATTGTAACCATGGTGATTACAT
AATCAATTGCATCTTGGCAATATTCTAAGATGGTAACCATAGTTGTCGGT
TCAGGTTCTTGCCAAAAACCATTGAATCTGGAAAAAAGAATGATAAATCA
ATTCAAATTTCTTTAAAAAATCACAATAAAGAGAAGAAGTCGTGATTCAG
AGTTTGAAGCTGTGCAACAATTGGAGAGGGATTTATATTCTTAGAGACTT
CAAAACCATTACCTAATATTCCTCAACAGACTTTGACTGTCGAATATTTT
TC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005515	XLOC_005515	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009860-exon-sc0000099-1575043694:519957..519971	TCONS_00009860-exon-sc0000099-1575043694:519957..519971	Clytia hemisphaerica	exon
TCONS_00009860-exon-sc0000099-1575043694:513970..514344	TCONS_00009860-exon-sc0000099-1575043694:513970..514344	Clytia hemisphaerica	exon
TCONS_00009860-exon-sc0000099-1510915933:519957..519971	TCONS_00009860-exon-sc0000099-1510915933:519957..519971	Clytia hemisphaerica	exon
TCONS_00009860-exon-sc0000099-1510915933:513970..514344	TCONS_00009860-exon-sc0000099-1510915933:513970..514344	Clytia hemisphaerica	exon
TCONS_00009860-exon-sc0000099-1491911889:519957..519971	TCONS_00009860-exon-sc0000099-1491911889:519957..519971	Clytia hemisphaerica	exon
TCONS_00009860-exon-sc0000099-1491911889:513970..514344	TCONS_00009860-exon-sc0000099-1491911889:513970..514344	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000099	supercontig	sc0000099:513970..519971 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.113069	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0836432	0.185818	0	0	0	0.221732	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00009860 vs. Swiss-Prot (Human)

BLAST of TCONS_00009860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00009860 (transcript) - C. hemisphaerica